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LotjaGi3g1v0103100.2

Overview

Field Value
Gene ID LotjaGi3g1v0103100
Transcript ID LotjaGi3g1v0103100.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Monoterpene synthase; TAIR: AT4G16730.1 terpene synthase 02; Swiss-Prot: sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic; TrEMBL-Plants: tr|A0A072V9D0|A0A072V9D0_MEDTR Monoterpene synthase; Found in the gene: LotjaGi3g1v0103100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:12763864..12767021) extracted from Lotus japonicus Gifu genome v1.2.

CCAAGAGCCAAGAAAATTTCCCTAAGATATATAGATTGTTTTTCTAATGGCTCTGCAGCTTCAAATTGCATCACGCCCCT TTAACTGTACTAAAATGCATTTTCCTCAAGAAGGAAAGTCTTCATCTCTTACAATGAGGAGCCCCAAGCTCGAGGTCTCT TGTGCAACTCGACACAAGGCATCATATAAAGTTAATAATAATACTCAAACAATTCCTCGTCAATCTGCAGTTTTTCAACC TACAATTTGGACTTATGATTATATCCAATCATTAAGTACTGAAAATAAGGTATGTTTCTTCTTCTTTTATTTTGTTTAGT TTCTTGTATGTGAATTTCTGATACCCTTGATGCTATTATAAGTGCTTCTCTACGATATGTTCGGGCTAATATCTTCTTGT TAAATTAATGCCGGAAGAAATTTACACAGATAAAGTAAGAGTGATAAGGGAAGAAGTAAGGACGATGCTTTGCAAAGTGG AAAGTGAGCTTGATCAACTTGAGTTTATTGATGTATTGCAAAGATTTGGAGTGGATTATCATTATGAGAATGAAATAAGA AAGTTCTTGGATGATATTTACAAAATGGACACCTTGAACGAAGAAAATGATTTATATGCTACAGCACTTAAGTTCAGACT CTTAAGGCAGCATGGTTATATTATATCTTCAGGTTTTTAACTTTTTATAGTCATTCTAAGATTGAACTTAAAATATATAC TCCATCCGTTCTAAAATTATTTTAGCCGTTCTCTATTTTTCGGGCTATAGCCCATACTAGTCTGCGGTATTGCGGGCCGG CCCGTGGACTTCAACCTGCTTACCCAGCTCTAATCACAATTCTCATTAATTAGTTGACAAATGATGTTCATTCTCTCTCT TTCATATACCTCATATTAAATAAGGGTGTTTTAGACAAATTATAACATCAATTAATGAACTTTCAATAGTTTTGGAACAG AGGGAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAATTGTGTGT TTATGAGTGTGTTTGTTGTTATAGATGTATTTATTCACTTTAAAGATGATCAAGGTGGCTTCAAGAAAAGCCGTACTCTT GATGTGGAGGGACTGTTATCATTATATGAAGCCTCATTTCATTCATTCGAAGATGAAACTATATTAGATGAAGCAAAAGA TTTTACCTCAAAATTTTTGAAAGAATATTTGAACGAGAGGAAAGGCAACAACTACACATCCCTTTTAATCAATCATGCCT TGGAGCTACCATTACATTGGAGGAATCCTAGATGGGAGGCTCAATGGTTCATTAATGTATATGAAATGAAGCAAAACATG ATTCCAACTTTACTTCAGTTAGCTAAACTTAGTTTCAATATTGGCCAAGCCATCTATATAGAAGAGCTCAAGGAATCATC CAGGTGAGAATCAATTATTTTGTTCATGAGACATTTTACTTAATATTTTCTTGATTAAAACCCACCTCGAGACATAATTG TTGAATGTTTTACAGTTACCATATCATATTTCTTTCTCACACATTAATTATATTATTCTCCAAAATAAAACTTACAAAAT ACAAACTAAATAGTAAATACAAGATTGAAACATTTAAAGAATTGTTAAATTAAACAGCTCCTCTTGTGTGAAATAAACCT CGAAAATATGTGAAATTAAATCTTTTAATTTATCTCAATAGATACTCCATTTATTCATTGATCATTTACATTTCTCGATC ACTTGTACTTATATATACCTCATAGTTTTTTTCCTTTCTCAAGATGGTGGAATAAAGTGGGCCTTGGAGAAAAGTTGAGT TTTGCTAGAGATCGGTTGGTTGAGGGCTATGTTTGGACCGTAGGAGCGAACTCTAGGCCAGATCTCGAATACTTCAGAAA GAATATGACAAAGGTCAATAACCTAATTGTCATAATTGATGATGTTTATGATGTGTATGGTACATTGGAGGAATTGGAGC TTTTCACAGAAGTAATCGAAAGGTTAATTAGTCTGCTTAATAATGATTTTCTTTACTCATTTTATTTGAAAAAAAAAATT CCAAAAAAAATATTTTAAATATTTTTCTTGTGATTCTAGGTGGGATGATCCAAATGCCGTGGATAGTCTCCCAGACTACA TGAAAACATGCTTTCATGCAATCTATAACTTTGTCAATGAAATTGCTTTGGAAAATCAAAAGAAGAATGGGTACGATATC ACCTCATACCTAATGAAAACGGTAAGAAATTATTTGTTTTGTTATTCAATCCTCTTAGTTATCTCTTTTCGGTATAAATT TATACACATAAAATTATTGTGCTCAATTAATCAAGAGTATTTTCAACTTGTTGTATCAGTGGGTAGATCTATGTAAATCA TATTTCATTGAAGCAAAGTGGTACCATGGTGGATATATTCCAAGCATCGAAGAATACTTCGAGAATGCTTGGATTTCCAT AAGTATGCCTGTTTTACTAACGCATGCTTACATCTTGGTTCCACATTCAATAAAAAAGGAAGAGTTGGATCATTTGGAAA AATACCCAGAAATAATTCGATTTCCAGGAATGATATTACGCCTTGCTAATGACATTGGATCATATAAGGTATGCTACAAA TCTCATTCTTTCTCATTGCAAAACTCTTTGGTTTCTTTGGTTTCTTCTCACTGCTTTTTTCCCACTTTCATTTTTAGGGT GAAATTGTGAAGGGTGATTCTCCCAAGTCAATTGAATGCTACATGAATGAAAGTGGAGCTTCTGAAGCAGAGGCTCTTGA GTATTTAAACTCTGTGATGTATAAAACATGGAAGAAGATGAATGAAGTGACTCATAATTCTTCTTTCTCTAGGTGTTTCA TAAGTACAACTGTAAACCTTACAAATATGGCATTGTGCATGTACCATCGTGGAGAAGGATATACTACTCAAGATCCTGAA TTTACGAGTCTCATCCAATCATTAATTATTCAACCCATCCCTATTACACAGACAAACAGTTAATGCTCAAATTAGTTTAT GCATTGTTTTTTGTTGTTGTGTAATAATTTATGCATTGTTTTAAGTACAATATGTAATGTGAGTTTTATTTTTATGAATA AATGCATTAACTTGGTTGTCAATAATATGCATTAATCT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0103100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCGGAAGAAATTTACACAGATAAAGTAAGAGTGATAAGGGAAGAAGTAAGGACGATGCTTTGCAAAGTGGAAAGTGA GCTTGATCAACTTGAGTTTATTGATGTATTGCAAAGATTTGGAGTGGATTATCATTATGAGAATGAAATAAGAAAGTTCT TGGATGATATTTACAAAATGGACACCTTGAACGAAGAAAATGATTTATATGCTACAGCACTTAAGTTCAGACTCTTAAGG CAGCATGGTTATATTATATCTTCAGATGTATTTATTCACTTTAAAGATGATCAAGGTGGCTTCAAGAAAAGCCGTACTCT TGATGTGGAGGGACTGTTATCATTATATGAAGCCTCATTTCATTCATTCGAAGATGAAACTATATTAGATGAAGCAAAAG ATTTTACCTCAAAATTTTTGAAAGAATATTTGAACGAGAGGAAAGGCAACAACTACACATCCCTTTTAATCAATCATGCC TTGGAGCTACCATTACATTGGAGGAATCCTAGATGGGAGGCTCAATGGTTCATTAATGTATATGAAATGAAGCAAAACAT GATTCCAACTTTACTTCAGTTAGCTAAACTTAGTTTCAATATTGGCCAAGCCATCTATATAGAAGAGCTCAAGGAATCAT CCAGATGGTGGAATAAAGTGGGCCTTGGAGAAAAGTTGAGTTTTGCTAGAGATCGGTTGGTTGAGGGCTATGTTTGGACC GTAGGAGCGAACTCTAGGCCAGATCTCGAATACTTCAGAAAGAATATGACAAAGGTCAATAACCTAATTGTCATAATTGA TGATGTTTATGATGTGTATGGTACATTGGAGGAATTGGAGCTTTTCACAGAAGTAATCGAAAGGTGGGATGATCCAAATG CCGTGGATAGTCTCCCAGACTACATGAAAACATGCTTTCATGCAATCTATAACTTTGTCAATGAAATTGCTTTGGAAAAT CAAAAGAAGAATGGGTACGATATCACCTCATACCTAATGAAAACGTGGGTAGATCTATGTAAATCATATTTCATTGAAGC AAAGTGGTACCATGGTGGATATATTCCAAGCATCGAAGAATACTTCGAGAATGCTTGGATTTCCATAAGTATGCCTGTTT TACTAACGCATGCTTACATCTTGGTTCCACATTCAATAAAAAAGGAAGAGTTGGATCATTTGGAAAAATACCCAGAAATA ATTCGATTTCCAGGAATGATATTACGCCTTGCTAATGACATTGGATCATATAAGGGTGAAATTGTGAAGGGTGATTCTCC CAAGTCAATTGAATGCTACATGAATGAAAGTGGAGCTTCTGAAGCAGAGGCTCTTGAGTATTTAAACTCTGTGATGTATA AAACATGGAAGAAGATGAATGAAGTGACTCATAATTCTTCTTTCTCTAGGTGTTTCATAAGTACAACTGTAAACCTTACA AATATGGCATTGTGCATGTACCATCGTGGAGAAGGATATACTACTCAAGATCCTGAATTTACGAGTCTCATCCAATCATT AATTATTCAACCCATCCCTATTACACAGACAAACAGTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0103100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPEEIYTDKVRVIREEVRTMLCKVESELDQLEFIDVLQRFGVDYHYENEIRKFLDDIYKMDTLNEENDLYATALKFRLLR QHGYIISSDVFIHFKDDQGGFKKSRTLDVEGLLSLYEASFHSFEDETILDEAKDFTSKFLKEYLNERKGNNYTSLLINHA LELPLHWRNPRWEAQWFINVYEMKQNMIPTLLQLAKLSFNIGQAIYIEELKESSRWWNKVGLGEKLSFARDRLVEGYVWT VGANSRPDLEYFRKNMTKVNNLIVIIDDVYDVYGTLEELELFTEVIERWDDPNAVDSLPDYMKTCFHAIYNFVNEIALEN QKKNGYDITSYLMKTWVDLCKSYFIEAKWYHGGYIPSIEEYFENAWISISMPVLLTHAYILVPHSIKKEELDHLEKYPEI IRFPGMILRLANDIGSYKGEIVKGDSPKSIECYMNESGASEAEALEYLNSVMYKTWKKMNEVTHNSSFSRCFISTTVNLT NMALCMYHRGEGYTTQDPEFTSLIQSLIIQPIPITQTNS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd00684
3 511 509 0.0 –
SUPERFAMILY
SSF48239
4 184 181 7.46E-58
IPR008930
Gene3D
G3DSA:1.50.10.130
5 201 197 1.3E-69
IPR036965
Pfam
PF01397
5 161 157 8.0E-50
IPR001906
PANTHER
PTHR31225:SF9
6 513 508 1.4E-203 –
PANTHER
PTHR31225
6 513 508 1.4E-203 –
SFLD
SFLDS00005
189 513 325 0.0 –
SUPERFAMILY
SSF48576
189 514 326 6.62E-100
IPR008949
SFLD
SFLDG01019
189 513 325 0.0
IPR034741
Pfam
PF03936
192 458 267 1.6E-97
IPR005630
Gene3D
G3DSA:1.10.600.10
203 515 313 3.0E-120
IPR008949

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0010333
Molecular function Terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
Subterm of
GO:0016829
Molecular function Lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0103100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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