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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001906
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We have found 56 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.160s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0063649.1
n.a. Alpha-humulene/(-)-(E)-beta-caryophyllene synthase [Medicago truncatula] gi|357452567|ref|XP_003596560.1| chr0 21690291 21692575 -
3 domain predictions
2 GO terms
Lj0g3v0072579.1
n.a. PREDICTED: myrcene synthase, chloroplastic-like isoform X2 [Cicer arietinum] gi|502088158|ref|XP_004488754.1| chr0 27009341 27010403 +
3 domain predictions
2 GO terms
Lj0g3v0102559.1
n.a. PREDICTED: (-)-germacrene D synthase-like [Cicer arietinum] gi|502084145|ref|XP_004487631.1| chr0 43674294 43677938 +
3 domain predictions
2 GO terms
Lj0g3v0116739.1
n.a. (+)-delta-cadinene synthase isozyme C2 [Medicago truncatula] gi|357452561|ref|XP_003596557.1| chr0 51378265 51379866 -
3 domain predictions
2 GO terms
Lj0g3v0140229.1
n.a. Limonene synthase [Medicago truncatula] gi|358348601|ref|XP_003638333.1| chr0 64354538 64355154 -
3 domain predictions
2 GO terms
Lj0g3v0185159.1
n.a. (+)-delta-cadinene synthase isozyme C2 [Medicago truncatula] gi|357452577|ref|XP_003596565.1| chr0 90095699 90096639 +
3 domain predictions
2 GO terms
Lj0g3v0198989.1
n.a. PREDICTED: LOW QUALITY PROTEIN: (3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial-like [Glycine max] gi|356519513|ref|XP_003528417.1| chr0 97444685 97451940 -
3 domain predictions
2 GO terms
Lj0g3v0198989.2
n.a. PREDICTED: LOW QUALITY PROTEIN: (3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial-like [Glycine max] gi|356519513|ref|XP_003528417.1| chr0 97444685 97451911 -
3 domain predictions
2 GO terms
Lj0g3v0221889.1
n.a. PREDICTED: (-)-germacrene D synthase-like [Cicer arietinum] gi|502143804|ref|XP_004505471.1| chr0 114071291 114073199 -
3 domain predictions
2 GO terms
Lj0g3v0244769.1
n.a. PREDICTED: (-)-germacrene D synthase-like [Cicer arietinum] gi|502143804|ref|XP_004505471.1| chr0 126944367 126947561 +
3 domain predictions
2 GO terms
Lj0g3v0250739.2
n.a. PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Cicer arietinum] gi|502087483|ref|XP_004488548.1| chr0 129981697 129987265 -
3 domain predictions
2 GO terms
Lj0g3v0251619.1
n.a. PREDICTED: ent-copalyl diphosphate synthase, chloroplastic-like [Glycine max] gi|356503551|ref|XP_003520571.1| chr0 130535096 130542943 +
3 domain predictions
2 GO terms
Lj0g3v0306569.1
n.a. Linalool synthase [Medicago truncatula] gi|357498837|ref|XP_003619707.1| chr0 159950037 159953128 -
3 domain predictions
2 GO terms
Lj0g3v0315869.1
n.a. PREDICTED: R-linalool synthase, chloroplastic-like [Glycine max] gi|356543756|ref|XP_003540326.1| chr0 164931992 164936188 -
3 domain predictions
2 GO terms
Lj0g3v0356449.1
n.a. PREDICTED: LOW QUALITY PROTEIN: isoprene synthase, chloroplastic-like [Glycine max] gi|356515248|ref|XP_003526313.1| chr0 187758786 187762356 -
3 domain predictions
2 GO terms
Lj1g3v0682850.3
n.a. PREDICTED: ent-copalyl diphosphate synthase, chloroplastic-like [Glycine max] gi|356570580|ref|XP_003553463.1| chr1 8891391 8918856 +
3 domain predictions
2 GO terms
Lj1g3v0682850.4
n.a. PREDICTED: ent-copalyl diphosphate synthase, chloroplastic-like [Glycine max] gi|356503551|ref|XP_003520571.1| chr1 8891735 8918856 +
3 domain predictions
2 GO terms
Lj1g3v4434270.1
n.a. PREDICTED: ent-copalyl diphosphate synthase, chloroplastic-like [Glycine max] gi|356503551|ref|XP_003520571.1| chr1 51726868 51738080 +
3 domain predictions
2 GO terms
Lj1g3v4434270.2
n.a. Terpene synthase-like; Terpenoid synthase [Medicago truncatula] gi|124360263|gb|ABN08276.1| chr1 51726868 51738080 +
3 domain predictions
2 GO terms
Lj1g3v4434270.3
n.a. PREDICTED: ent-copalyl diphosphate synthase, chloroplastic-like [Glycine max] gi|356503551|ref|XP_003520571.1| chr1 51726868 51738080 +
3 domain predictions
2 GO terms
Lj3g3v0807780.1
n.a. Limonene synthase [Medicago truncatula] gi|357516237|ref|XP_003628407.1| chr3 9779363 9780091 +
3 domain predictions
2 GO terms
Lj3g3v0948400.1
n.a. PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Cicer arietinum] gi|502087483|ref|XP_004488548.1| chr3 11687467 11693080 +
3 domain predictions
2 GO terms
Lj3g3v0948400.2
n.a. PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Cicer arietinum] gi|502087483|ref|XP_004488548.1| chr3 11687467 11707806 +
3 domain predictions
2 GO terms
Lj3g3v0948400.4
n.a. PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Cicer arietinum] gi|502087483|ref|XP_004488548.1| chr3 11699867 11707806 +
3 domain predictions
2 GO terms
Lj3g3v2888440.1
n.a. RecName: Full=Tricyclene synthase EBOS, chloroplastic; AltName: Full=(E)-beta-ocimene synthase; Short=LjEBOS; Short=LjEbetaOS; AltName: Full=Terpenoid synthase 2; Short=LjTPS2; Flags: Precursorgi|50898180|gb|AAT86042.1| E-beta-ocimene synthase [Lotus japonicus] gi|75253430|sp|Q672F7.1|TPS2_LOTJA chr3 35774423 35778026 -
3 domain predictions
2 GO terms
Lj3g3v2888450.1
n.a. RecName: Full=Tricyclene synthase EBOS, chloroplastic; AltName: Full=(E)-beta-ocimene synthase; Short=LjEBOS; Short=LjEbetaOS; AltName: Full=Terpenoid synthase 2; Short=LjTPS2; Flags: Precursorgi|50898180|gb|AAT86042.1| E-beta-ocimene synthase [Lotus japonicus] gi|75253430|sp|Q672F7.1|TPS2_LOTJA chr3 35774695 35778034 -
3 domain predictions
2 GO terms
Lj3g3v3653420.2
n.a. PREDICTED: (E,E)-alpha-farnesene synthase-like [Glycine max] gi|356565739|ref|XP_003551095.1| chr3 44569378 44577283 +
3 domain predictions
2 GO terms
Lj3g3v3653430.1
n.a. n.a. chr3 44571348 44576081 -
2 domain predictions
2 GO terms
Lj6g3v2135290.1
n.a. Linalool synthase [Medicago truncatula] gi|357446233|ref|XP_003593394.1| chr6 24844323 24847568 -
3 domain predictions
2 GO terms
LotjaGi1g1v0228700.1
n.a. Copalyldiphosphate synthase; TAIR: AT4G02780.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein; Swiss-Prot: sp|O04408|KSA_PEA Ent-copalyl diphosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KF95|K7KF95_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0228700 LjG1.1_chr1 52890890 52918694 -
2 domain predictions
2 GO terms
LotjaGi1g1v0228700.2
n.a. Copalyldiphosphate synthase; TAIR: AT4G02780.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein; Swiss-Prot: sp|O04408|KSA_PEA Ent-copalyl diphosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KF95|K7KF95_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0228700 LjG1.1_chr1 52891185 52918694 -
2 domain predictions
2 GO terms
LotjaGi1g1v0718300.1
n.a. Copalyldiphosphate synthase; TAIR: AT4G02780.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein; Swiss-Prot: sp|O04408|KSA_PEA Ent-copalyl diphosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KF95|K7KF95_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0718300 LjG1.1_chr1 128678214 128689768 -
2 domain predictions
2 GO terms
LotjaGi1g1v0718300.2
n.a. Copalyldiphosphate synthase; TAIR: AT4G02780.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein; Swiss-Prot: sp|O04408|KSA_PEA Ent-copalyl diphosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A072TW04|A0A072TW04_MEDTR Copalyldiphosphate synthase; Found in the gene: LotjaGi1g1v0718300 LjG1.1_chr1 128678214 128689768 -
2 domain predictions
2 GO terms
LotjaGi2g1v0279700.1
n.a. Nerol synthase; TAIR: AT1G61680.1 terpene synthase 14; Swiss-Prot: sp|P0CV94|NES1_FRAAN (3S,6E)-nerolidol synthase 1; TrEMBL-Plants: tr|A0A072UY90|A0A072UY90_MEDTR (3S)-linalool/(E)-nerolidol/(E,E)-geranyl linalool synthase; Found in the gene: LotjaGi2g1v0279700 LjG1.1_chr2 75105781 75109278 -
2 domain predictions
2 GO terms
LotjaGi3g1v0095100.1
n.a. Sesquiterpene synthase; TAIR: AT5G23960.2 terpene synthase 21; Swiss-Prot: sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase; TrEMBL-Plants: tr|Q5UBY0|Q5UBY0_MEDTR Sesquiterpene synthase; Found in the gene: LotjaGi3g1v0095100 LjG1.1_chr3 11828877 11883497 +
2 domain predictions
2 GO terms
LotjaGi3g1v0099800.2
n.a. Monoterpene synthase; TAIR: AT4G16740.1 terpene synthase 03; Swiss-Prot: sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic; TrEMBL-Plants: tr|A0A072V9D0|A0A072V9D0_MEDTR Monoterpene synthase; Found in the gene: LotjaGi3g1v0099800 LjG1.1_chr3 12412349 12418882 -
2 domain predictions
2 GO terms
LotjaGi3g1v0101800.1
n.a. Sesquiterpene synthase; TAIR: AT5G23960.2 terpene synthase 21; Swiss-Prot: sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase; TrEMBL-Plants: tr|Q5UBY0|Q5UBY0_MEDTR Sesquiterpene synthase; Found in the gene: LotjaGi3g1v0101800 LjG1.1_chr3 12618152 12637091 -
2 domain predictions
2 GO terms
LotjaGi3g1v0103100.1
n.a. Monoterpene synthase; TAIR: AT4G16730.1 terpene synthase 02; Swiss-Prot: sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic; TrEMBL-Plants: tr|A0A072V9D0|A0A072V9D0_MEDTR Monoterpene synthase; Found in the gene: LotjaGi3g1v0103100 LjG1.1_chr3 12759096 12767036 -
2 domain predictions
2 GO terms
LotjaGi3g1v0103100.2
n.a. Monoterpene synthase; TAIR: AT4G16730.1 terpene synthase 02; Swiss-Prot: sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic; TrEMBL-Plants: tr|A0A072V9D0|A0A072V9D0_MEDTR Monoterpene synthase; Found in the gene: LotjaGi3g1v0103100 LjG1.1_chr3 12763864 12767021 -
2 domain predictions
2 GO terms
LotjaGi3g1v0132900.1
n.a. Kaurene synthase; TAIR: AT1G79460.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein; Swiss-Prot: sp|Q39548|KSB_CUCMA Ent-kaur-16-ene synthase, chloroplastic; TrEMBL-Plants: tr|K7L745|K7L745_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0132900 LjG1.1_chr3 16686450 16698668 +
2 domain predictions
2 GO terms
LotjaGi3g1v0132900.2
n.a. Kaurene synthase; TAIR: AT1G79460.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein; Swiss-Prot: sp|Q39548|KSB_CUCMA Ent-kaur-16-ene synthase, chloroplastic; TrEMBL-Plants: tr|K7L745|K7L745_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0132900 LjG1.1_chr3 16686450 16698668 +
2 domain predictions
2 GO terms
LotjaGi3g1v0133000.1
n.a. Terpene synthase; TAIR: AT1G79460.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein; Swiss-Prot: sp|Q39548|KSB_CUCMA Ent-kaur-16-ene synthase, chloroplastic; TrEMBL-Plants: tr|A0A151RPM8|A0A151RPM8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0133000 LjG1.1_chr3 16704720 16713390 +
2 domain predictions
2 GO terms
LotjaGi3g1v0193400.2
n.a. Sesquiterpene synthase; TAIR: AT4G16730.1 terpene synthase 02; Swiss-Prot: sp|B9RHP7|TPS11_RICCO Probable terpene synthase 11; TrEMBL-Plants: tr|K7LVZ0|K7LVZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0193400 LjG1.1_chr3 27965188 27970526 +
2 domain predictions
2 GO terms
LotjaGi3g1v0223800.1
n.a. Sesquiterpene synthase, putative; TAIR: AT5G23960.1 terpene synthase 21; Swiss-Prot: sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase; TrEMBL-Plants: tr|A0A0L9TED3|A0A0L9TED3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0223800 LjG1.1_chr3 34232663 34260322 +
2 domain predictions
2 GO terms
LotjaGi3g1v0224100.1
n.a. Sesquiterpene synthase, putative; TAIR: AT5G23960.2 terpene synthase 21; Swiss-Prot: sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase; TrEMBL-Plants: tr|A2Q649|A2Q649_MEDTR Terpene synthase family, metal-binding domain protein; Found in the gene: LotjaGi3g1v0224100 LjG1.1_chr3 34343126 34349262 +
2 domain predictions
2 GO terms
LotjaGi3g1v0249900.1
n.a. Monoterpene synthase; TAIR: AT4G16730.1 terpene synthase 02; Swiss-Prot: sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic; TrEMBL-Plants: tr|A0A072V9D0|A0A072V9D0_MEDTR Monoterpene synthase; Found in the gene: LotjaGi3g1v0249900 LjG1.1_chr3 41628363 41631075 -
2 domain predictions
2 GO terms
LotjaGi3g1v0334200.1
n.a. Sesquiterpene synthase; TAIR: AT5G23960.2 terpene synthase 21; Swiss-Prot: sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase; TrEMBL-Plants: tr|Q5UBY0|Q5UBY0_MEDTR Sesquiterpene synthase; Found in the gene: LotjaGi3g1v0334200 LjG1.1_chr3 70382156 70385366 -
2 domain predictions
2 GO terms
LotjaGi3g1v0462800.1
n.a. Terpene synthase; TAIR: AT3G25820.1 terpene synthase-like sequence-1,8-cineole; Swiss-Prot: sp|Q672F7|TPS2_LOTJA Tricyclene synthase EBOS, chloroplastic; TrEMBL-Plants: tr|I1LRT2|I1LRT2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0462800 LjG1.1_chr3 87786944 87790523 -
2 domain predictions
2 GO terms
LotjaGi3g1v0546500.1
n.a. Terpene synthase; TAIR: AT4G16740.1 terpene synthase 03; Swiss-Prot: sp|B9RXW0|TPS7_RICCO Alpha-farnesene synthase; TrEMBL-Plants: tr|I1MS82|I1MS82_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0546500 LjG1.1_chr3 96287768 96296075 +
2 domain predictions
2 GO terms
LotjaGi4g1v0043400.1
n.a. Terpene synthase; TAIR: AT2G24210.1 terpene synthase 10; Swiss-Prot: sp|Q672F7|TPS2_LOTJA Tricyclene synthase EBOS, chloroplastic; TrEMBL-Plants: tr|K7KY89|K7KY89_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0043400 LjG1.1_chr4 5135604 5142936 -
2 domain predictions
2 GO terms