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LotjaGi3g1v0130800.5

Overview

Field Value
Gene ID LotjaGi3g1v0130800
Transcript ID LotjaGi3g1v0130800.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT1G60810.1 ATP-citrate lyase A-2; Swiss-Prot: sp|O22718|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2; TrEMBL-Plants: tr|K7L723|K7L723_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0130800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:16334924..16338480) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGCGTAAGAAGATCAGAGAGTATGATTCTAAGAGGCTGTTGAAGGAGCACTTTAAGAGACTTTCTGGCCAGGAATT GCCCATCAAGTCTGCACAAGTATGCATTCTCAATTTCTCATCATGGTTTATTGTTTAGTTTGTTGAATTTTTTAATTGTT CTTGTGTTGGCTTGGCTTTGAATCTTGTACCTTCAGATTTGTTTGGTTTGTGAAATTGCAATTTAAAGTTTTGTTAGCTT CTGTTAATTATATGACCCTATATTTATATTAATCCTATGTGATATCTCAAAGGACATTTGAGTTTTGTAATGATAGAAAT TAGAACGTAGATCCGGTGGATGAACATTGAACTAGTCTTGTTTGTCCTTCTGTGACCTCATTTCATTGCATTAGTCAGTT AAAAAAAATTCAAATCTTGAAGCTTCCTTTATTTAACTAACTTACTACAAACAATGTATAAACAATGTATTGCGTTTAGT TTCTTTCCTTGGTTAAGTACATGGTATGATGGTTATCTCATGATGTTCACATTATCCAAACTTGTTATTTCCTAATCCTT ACTGCCATCAGACAGTTACCCCTGCTGTTTAACTATGCTGGTTTGTAGAATAATGTATTAGCTTCTGGATCCCATTAGTA TATAGCTGGGCTTTGTGATTAAGTTCAAATTTGCATATTAATAAGCTACCCCCAACTTACAAATTCAATCTGTACAGCTT GCATCTTGAATAATAAAGTTGTGTGATGATTTATTTTGTAGGTCACAGAATCAACCGATTTTAATGAGCTAGCAGGGAAG GAACCCTGGCTCTCATCTTCAAAATTGGTTGTGAAACCTGACATGCTATTTGGAAAGCGTGGAAAAAGTGGGTTGGTTGC CTTGAATCTTGATTTGGCAGATGTTGCTTCTTTTGTGAAAGAGCGTCTTGGCAAAGAGGTATTTTCTTTCTCCTCTGTCC CTCCAAACTTTACTCAAATTGTGAACACTTTTTCTTAGTACTTTATGTCTATCCTTTAAGGTTTGCTCATATTTCTCTCT AAAATTTAGGTTGAGATGGGTGGATGCAAAGGGCCTATAACAACTTTCATTGTTGAACAATTCATCCCCCACAACGAGGA GTTTTACCTTAACATTGTCTCGGAGAGACTGGGGAACAGTATAAGCTTTTCTGAATGTGGAGGAATTGATATTGAAGAGA ACTGGGACAAGGTACCAAATTGCATATTGTTTTTACCTTTTAAAAAATAAATCTCACTGTAATTTTTACTCATATCTTCC CTCATAGTTTCCTGAGCTACAAAATGGTCTGTTCGTATTTCAGGTTAAGACTGTATTTATTCCAACAGGAGTGTCTCTTA CATTAGAGAATATTGCCCCTCTTGTTGCAACCCTCCCATTGGAGGTATATTCACTTGACTAACTTGTTTTTACATGAACA GGTCAACTTAGTTACTTTTTTTTTTTACCTAACATGTATTTCAGCTTTCTACATTTTATTGATGTTAATGAATACCTAAT ACTATTTTGTTTGTGGCACTTTATTTCAATTATTTACAGATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGATTTTCGC TCTATTTGAAGGTATACTATATAATATAACAAAAGATCATGTGTGCTTTTGAAGACAACTTCATTGACAGATTCCCTTAA ATTTAAATATTTTATTTCTATTACCTCCTTGTATGTTAGATCTGGATTTCACTTTCTTGGAGATGAATCCTTTCACTTTG GTTAATGGAAAGCCGTATCCTTTAGATATGAGAGGGGAGCTAGATGACACTGCTGCTTTCAAGAATTTTAAGAAGTGGGT TTCTTCCATCCAAAGAGTATTAACTTTTATAAGGATGCATATAATTGTTAATATCTCTAACTAATCAAGAAAAACTGAAT CATATTTCACAGTTCACATTTTTTATTGAGTATGCGTGTTGTTATTATTTTCAGATGGGGAAACATTGAATTTCCATTGC CATTTGGAAGGGTTATGAGTCCTACCGAGACTTTCATTCATGGATTAGATGAAAAGGTGAACAAATATAATTTTCAGCTT TATCTACAATTGCATTCAATTCATTTATAACTTTGTCCTTAAGCTGCAAATCTCAATCATCTTTGCTTCTATGTAATACT AAGATATGGTCTGCAGATTGTCAGGGTCAATTAAATTCCTTGTACCAACCTCTTATCCATCATGAATAATATCATTTCTT CTAGTTATGGTTGTATGAAAGTTCTATGAAAAGCTTATGATGTTTGTTTGGATGTTTTCTGCTGCCAGACAAGTGCATCT TTGAAATTCACAGTATTAAACCCAGAGGGCCGGATTTGGACAATGGTAGCTGGGGGAGGCGCTAGCGTCATCTATGCTGA CACAGTGTGTTTCTATTACTTCAGAACTAAATACATTGCTAAACTATATTCTCTCTTGATATTAAGCAACAAATACTAAT TTATTAAAACAGGTAGGAGATCTTGGCTATGCTGCTGAGCTTGGAAATTATGCAGAATATAGTGGTGCACCCAAGGAAGA TGAGGTCTTGCAGTATGCCAGAGTTGTCATTGATGTAATTAATTCATCTCACTACATTGTTTTCAGTATAATCATTTCCG ATTTGCAGATTCAATATTGTTCCTTTAACATGATGAGCCATTCTTTCTTTGGAGTGTGTAAGGGTACTTGAAACTGATAC TGTAGTGATTTTAGTTACATGTCCATGATAATCTCTTTGCAGTGTGCAACTGCAAATCCTGATGGCCAAAAGCGAGCACT TGTGATAGGGGGAGGAATAGCTAACTTCACCGACGTTGCTGCTACATTCAGTGGCATAATTCGAGCTTTGAAGGAGAAGG TAAGCCTTATCACAATGAAGCTATGCTCAGTTATATCAAACGATGATTTGCTTGTAGCAGAGTTAATAAATTATTGAGCT TTATTACAAACCAGGAACAAAAGCTAAAAGAAGCAAAGATGCACCTCTATGTCAGGAGAGGAGGTCCCAACTACCAGAAG GGCCTAGCGAAAATGCGGGCACTTGGAGAGGAGATTGGCATCCCTATTGAGGTGGTACAACTGATACCTTTATTGATTGT GTTGAGAAGTCCACGTTGACTAAAGATATAACTAAATAATTCATTAAAAAGAGTTATGCAACCCTCACCCTTAAACTAGT TTTTGGGGTAGAGTTAGTCATAACTCATAACCTAATTCTAATATGGTATCAGAGCTTATCATCGACCCATTTCTTGGGCC ACCCGCTAATGGGCTACCCGCATATGTCCAGTCCAGCCCTAGGGGTCATGTGTGTTGAGAAGTCTCACATTGACCAGAGA TATGATTCAATAATTCCTTATAAAGACCTTACCCAAATTCTAATAGGTTGTTTTAAAACCAACTTATTGTGTTCATCAAG TTTGTTTTGAGGAACTTCCTCTTATCTAATATGGTCTCTTTCCAGGTTTATGGACCCGAAGCAACAATGACTGGTATATG CAAACAAGCAATCCAGTGCATCACTGCTGCTGCTTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0130800.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTATTTGGAAAGCGTGGAAAAAGTGGGTTGGTTGCCTTGAATCTTGATTTGGCAGATGTTGCTTCTTTTGTGAAAGA GCGTCTTGGCAAAGAGGTTGAGATGGGTGGATGCAAAGGGCCTATAACAACTTTCATTGTTGAACAATTCATCCCCCACA ACGAGGAGTTTTACCTTAACATTGTCTCGGAGAGACTGGGGAACAGTATAAGCTTTTCTGAATGTGGAGGAATTGATATT GAAGAGAACTGGGACAAGGTTAAGACTGTATTTATTCCAACAGGAGTGTCTCTTACATTAGAGAATATTGCCCCTCTTGT TGCAACCCTCCCATTGGAGATCAAGGGAGAAATTGAGGAATTTCTCAAAGTGATTTTCGCTCTATTTGAAGATCTGGATT TCACTTTCTTGGAGATGAATCCTTTCACTTTGGTTAATGGAAAGCCGTATCCTTTAGATATGAGAGGGGAGCTAGATGAC ACTGCTGCTTTCAAGAATTTTAAGAAATGGGGAAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTCCTACCGA GACTTTCATTCATGGATTAGATGAAAAGACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAGAGGGCCGGATTTGGA CAATGGTAGCTGGGGGAGGCGCTAGCGTCATCTATGCTGACACAGTAGGAGATCTTGGCTATGCTGCTGAGCTTGGAAAT TATGCAGAATATAGTGGTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTTGTCATTGATTGTGCAACTGCAAA TCCTGATGGCCAAAAGCGAGCACTTGTGATAGGGGGAGGAATAGCTAACTTCACCGACGTTGCTGCTACATTCAGTGGCA TAATTCGAGCTTTGAAGGAGAAGGAACAAAAGCTAAAAGAAGCAAAGATGCACCTCTATGTCAGGAGAGGAGGTCCCAAC TACCAGAAGGGCCTAGCGAAAATGCGGGCACTTGGAGAGGAGATTGGCATCCCTATTGAGGTGGTTTATGGACCCGAAGC AACAATGACTGGTATATGCAAACAAGCAATCCAGTGCATCACTGCTGCTGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0130800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLFGKRGKSGLVALNLDLADVASFVKERLGKEVEMGGCKGPITTFIVEQFIPHNEEFYLNIVSERLGNSISFSECGGIDI EENWDKVKTVFIPTGVSLTLENIAPLVATLPLEIKGEIEEFLKVIFALFEDLDFTFLEMNPFTLVNGKPYPLDMRGELDD TAAFKNFKKWGNIEFPLPFGRVMSPTETFIHGLDEKTSASLKFTVLNPEGRIWTMVAGGGASVIYADTVGDLGYAAELGN YAEYSGAPKEDEVLQYARVVIDCATANPDGQKRALVIGGGIANFTDVAATFSGIIRALKEKEQKLKEAKMHLYVRRGGPN YQKGLAKMRALGEEIGIPIEVVYGPEATMTGICKQAIQCITAAA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23118:SF26
1 364 364 9.0E-248 –
PANTHER
PTHR23118
1 364 364 9.0E-248 –
Gene3D
G3DSA:3.30.1490.20
1 50 50 1.3E-61
IPR013815
SUPERFAMILY
SSF56059
2 176 175 3.53E-29 –
Pfam
PF08442
2 143 142 2.2E-11
IPR013650
Gene3D
G3DSA:3.30.470.20
51 179 129 1.3E-61 –
Pfam
PF16114
181 358 178 6.3E-80
IPR032263
Gene3D
G3DSA:3.40.50.261
184 344 161 9.1E-65
IPR016102
SUPERFAMILY
SSF52210
197 342 146 2.38E-18
IPR016102

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0130800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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