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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013815
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We have found 41 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.498s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0036439.1
n.a. PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi|356535191|ref|XP_003536132.1| chr0 11645213 11646756 -
2 domain predictions
1 GO term
Lj0g3v0076349.1
n.a. PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi|356535191|ref|XP_003536132.1| chr0 29076002 29077861 +
2 domain predictions
1 GO term
Lj0g3v0077959.1
n.a. Carbamoyl-phosphate synthase large chain [Medicago truncatula] gi|357453751|ref|XP_003597156.1| chr0 29996981 30002351 +
2 domain predictions
1 GO term
Lj0g3v0078859.2
n.a. PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi|356535191|ref|XP_003536132.1| chr0 30414696 30421656 -
2 domain predictions
1 GO term
Lj4g3v1083940.1
n.a. PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Cicer arietinum] gi|502154052|ref|XP_004509565.1| chr4 15643148 15679391 -
2 domain predictions
1 GO term
Lj4g3v1083940.2
n.a. PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Cicer arietinum] gi|502154052|ref|XP_004509565.1| chr4 15651417 15683015 -
2 domain predictions
1 GO term
Lj4g3v2375070.1
n.a. PREDICTED: pyruvate, phosphate dikinase, chloroplastic-like [Glycine max] gi|356564561|ref|XP_003550521.1| chr4 32861483 32870082 -
2 domain predictions
1 GO term
Lj4g3v3015020.1
n.a. PREDICTED: biotin carboxylase 1, chloroplastic-like [Cicer arietinum] gi|502138858|ref|XP_004503555.1| chr4 40296573 40303908 -
2 domain predictions
1 GO term
Lj5g3v1003320.1
n.a. PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like isoform X2 [Cicer arietinum] gi|502115337|ref|XP_004495179.1| chr5 15781280 15787890 -
2 domain predictions
1 GO term
Lj5g3v1118370.1
n.a. succinyl-CoA ligase beta subunit [Caragana jubata] gi|146215968|gb|ABQ10186.1| chr5 17844201 17848743 -
2 domain predictions
1 GO term
Lj5g3v2263910.1
n.a. PREDICTED: phosphoribosylamine--glycine ligase, chloroplastic-like isoform X2 [Cicer arietinum] gi|502123844|ref|XP_004498282.1| chr5 33014193 33017626 -
2 domain predictions
1 GO term
Lj5g3v2302970.1
n.a. PREDICTED: phosphoglucan, water dikinase, chloroplastic-like isoform X2 [Cicer arietinum] gi|502121720|ref|XP_004497422.1| chr5 34168030 34186065 -
2 domain predictions
1 GO term
LotjaGi1g1v0246300.2
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|A0A0R0K6S7|A0A0R0K6S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59093162 59109061 +
2 domain predictions
1 GO term
LotjaGi1g1v0246300.3
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|A0A0R0K6S7|A0A0R0K6S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59093322 59109042 +
2 domain predictions
1 GO term
LotjaGi1g1v0246300.4
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|I1JVH6|I1JVH6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59094710 59108673 +
2 domain predictions
1 GO term
LotjaGi1g1v0246300.5
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|A0A0R0K6S7|A0A0R0K6S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59094710 59108673 +
2 domain predictions
1 GO term
LotjaGi1g1v0750300.1
n.a. Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT1G09430.1 ATP-citrate lyase A-3; Swiss-Prot: sp|Q2QZ86|ACLA2_ORYSJ ATP-citrate synthase alpha chain protein 2; TrEMBL-Plants: tr|I1JR24|I1JR24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0750300 LjG1.1_chr1 132262354 132267968 +
2 domain predictions
1 GO term
LotjaGi1g1v0750300.2
n.a. Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT1G09430.1 ATP-citrate lyase A-3; Swiss-Prot: sp|Q2QZ86|ACLA2_ORYSJ ATP-citrate synthase alpha chain protein 2; TrEMBL-Plants: tr|I1JR24|I1JR24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0750300 LjG1.1_chr1 132262763 132266841 +
2 domain predictions
1 GO term
LotjaGi2g1v0322000.1
n.a. Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT1G10670.1 ATP-citrate lyase A-1; Swiss-Prot: sp|Q9SGY2|ACLA1_ARATH ATP-citrate synthase alpha chain protein 1; TrEMBL-Plants: tr|I1JC43|I1JC43_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0322000 LjG1.1_chr2 79670286 79674532 +
2 domain predictions
1 GO term
LotjaGi2g1v0322000.2
n.a. Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT1G60810.1 ATP-citrate lyase A-2; Swiss-Prot: sp|O22718|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2; TrEMBL-Plants: tr|G7K076|G7K076_MEDTR ATP-citrate synthase alpha chain protein; Found in the gene: LotjaGi2g1v0322000 LjG1.1_chr2 79671006 79674243 +
2 domain predictions
1 GO term
LotjaGi3g1v0130800.1
n.a. Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT1G60810.1 ATP-citrate lyase A-2; Swiss-Prot: sp|O22718|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2; TrEMBL-Plants: tr|A0A151RQ09|A0A151RQ09_CAJCA ATP-citrate synthase; Found in the gene: LotjaGi3g1v0130800 LjG1.1_chr3 16334632 16338858 -
2 domain predictions
1 GO term
LotjaGi3g1v0130800.3
n.a. Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT1G60810.1 ATP-citrate lyase A-2; Swiss-Prot: sp|O22718|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2; TrEMBL-Plants: tr|A0A151RQ09|A0A151RQ09_CAJCA ATP-citrate synthase; Found in the gene: LotjaGi3g1v0130800 LjG1.1_chr3 16334924 16338480 -
2 domain predictions
1 GO term
LotjaGi3g1v0130800.4
n.a. Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT1G60810.1 ATP-citrate lyase A-2; Swiss-Prot: sp|O22718|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2; TrEMBL-Plants: tr|A0A151RQ09|A0A151RQ09_CAJCA ATP-citrate synthase; Found in the gene: LotjaGi3g1v0130800 LjG1.1_chr3 16334924 16338480 -
2 domain predictions
1 GO term
LotjaGi3g1v0130800.5
n.a. Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT1G60810.1 ATP-citrate lyase A-2; Swiss-Prot: sp|O22718|ACLA2_ARATH ATP-citrate synthase alpha chain protein 2; TrEMBL-Plants: tr|K7L723|K7L723_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0130800 LjG1.1_chr3 16334924 16338480 -
2 domain predictions
1 GO term
LotjaGi4g1v0156400.1
n.a. Alpha-glucan water dikinase; TAIR: AT1G10760.1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein; Swiss-Prot: sp|Q8LPT9|GWD1_CITRE Alpha-glucan water dikinase, chloroplastic; TrEMBL-Plants: tr|A0A151RQ57|A0A151RQ57_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0156400 LjG1.1_chr4 27196674 27234816 +
2 domain predictions
1 GO term
LotjaGi4g1v0156400.2
n.a. Alpha-glucan water dikinase; TAIR: AT1G10760.1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein; Swiss-Prot: sp|Q8LPT9|GWD1_CITRE Alpha-glucan water dikinase, chloroplastic; TrEMBL-Plants: tr|A0A151RQ57|A0A151RQ57_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0156400 LjG1.1_chr4 27197135 27226565 +
2 domain predictions
1 GO term
LotjaGi4g1v0348600.1
n.a. Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42910|PPDK_MESCR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 LjG1.1_chr4 72734389 72743393 -
2 domain predictions
1 GO term
LotjaGi4g1v0348600.2
n.a. Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42736|PPDK_FLAPR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 LjG1.1_chr4 72734431 72741791 -
2 domain predictions
1 GO term
LotjaGi4g1v0348600.3
n.a. Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42910|PPDK_MESCR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 LjG1.1_chr4 72734435 72743064 -
2 domain predictions
1 GO term
LotjaGi4g1v0348600.4
n.a. Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q39734|PPDK_FLABR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A151STM8|A0A151STM8_CAJCA Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 LjG1.1_chr4 72734774 72740861 -
2 domain predictions
1 GO term
LotjaGi4g1v0348600.6
n.a. Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42910|PPDK_MESCR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A151STM8|A0A151STM8_CAJCA Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 LjG1.1_chr4 72734790 72740920 -
2 domain predictions
1 GO term
LotjaGi4g1v0348600.7
n.a. Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q39734|PPDK_FLABR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A151STM8|A0A151STM8_CAJCA Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 LjG1.1_chr4 72734790 72740929 -
2 domain predictions
1 GO term
LotjaGi4g1v0348600.8
n.a. Pyruvate, phosphate dikinase; TAIR: AT4G15530.5 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42736|PPDK_FLAPR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 LjG1.1_chr4 72734790 72740929 -
2 domain predictions
1 GO term
LotjaGi4g1v0348600.9
n.a. Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q39734|PPDK_FLABR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 LjG1.1_chr4 72734790 72740929 -
2 domain predictions
1 GO term
LotjaGi5g1v0154600.1
n.a. Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT2G20420.1 ATP citrate lyase (ACL) family protein; Swiss-Prot: sp|O82662|SUCB_ARATH Succinate--CoA ligase [ADP]-forming] subunit beta, mitochondrial; TrEMBL-Plants: tr|A5HIG2|A5HIG2_9FABA Succinate-CoA ligase subunit beta; Found in the gene: LotjaGi5g1v0154600 LjG1.1_chr5 40153201 40158211 +
2 domain predictions
1 GO term
LotjaGi5g1v0211000.1
n.a. Formate-dependent phosphoribosylglycinamide formyltransferase; TAIR: AT2G37690.1 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase; Swiss-Prot: sp|P55195|PUR6_VIGAC Phosphoribosylaminoimidazole carboxylase, chloroplastic; TrEMBL-Plants: tr|K7LJS8|K7LJS8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0211000 LjG1.1_chr5 51522479 51529430 -
2 domain predictions
1 GO term
LotjaGi5g1v0354900.1
n.a. Phosphoribosylamine-glycine ligase; TAIR: AT1G09830.1 Glycinamide ribonucleotide (GAR) synthetase; Swiss-Prot: sp|P52420|PUR2_ARATH Phosphoribosylamine--glycine ligase, chloroplastic; TrEMBL-Plants: tr|K7LJM6|K7LJM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354900 LjG1.1_chr5 67035087 67038946 -
2 domain predictions
1 GO term
LotjaGi5g1v0365700.2
n.a. Phosphoglucan, water dikinase; TAIR: AT5G26570.1 chloroplastidic phosphoglucan, water dikinase (ATGWD3); Swiss-Prot: sp|Q6ZY51|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic; TrEMBL-Plants: tr|A0A072UBU6|A0A072UBU6_MEDTR Phosphoglucan, water dikinase; Found in the gene: LotjaGi5g1v0365700 LjG1.1_chr5 68036729 68051157 -
2 domain predictions
1 GO term
LotjaGi5g1v0365700.3
n.a. Phosphoglucan, water dikinase; TAIR: AT5G26570.1 chloroplastidic phosphoglucan, water dikinase (ATGWD3); Swiss-Prot: sp|Q6ZY51|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic; TrEMBL-Plants: tr|A0A072UCX7|A0A072UCX7_MEDTR Phosphoglucan, water dikinase; Found in the gene: LotjaGi5g1v0365700 LjG1.1_chr5 68037031 68043307 -
2 domain predictions
1 GO term
LotjaGi6g1v0225000.1
n.a. Tubulin-tyrosine ligase family protein; TAIR: AT1G77550.1 tubulin-tyrosine ligase; Swiss-Prot: sp|Q3UDE2|TTL12_MOUSE Tubulin--tyrosine ligase-like protein 12; TrEMBL-Plants: tr|A0A151RWF2|A0A151RWF2_CAJCA Tubulin--tyrosine ligase-like protein 12; Found in the gene: LotjaGi6g1v0225000 LjG1.1_chr6 53001789 53010048 -
2 domain predictions
1 GO term
LotjaGi6g1v0225000.2
n.a. Tubulin-tyrosine ligase family protein; TAIR: AT1G77550.1 tubulin-tyrosine ligase; Swiss-Prot: sp|Q3UDE2|TTL12_MOUSE Tubulin--tyrosine ligase-like protein 12; TrEMBL-Plants: tr|A0A151RWF2|A0A151RWF2_CAJCA Tubulin--tyrosine ligase-like protein 12; Found in the gene: LotjaGi6g1v0225000 LjG1.1_chr6 53003471 53009783 -
2 domain predictions
1 GO term