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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0141700 |
| Transcript ID | LotjaGi3g1v0141700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem II 10 kDa polypeptide family protein; TAIR: AT1G79040.1 photosystem II subunit R; Swiss-Prot: sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic; TrEMBL-Plants: tr|I3SHR8|I3SHR8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0141700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18796903..18800758) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGATTGAGGGAATTAACTGCTGCAGAGATCCAAATCCGACCAAAACATATTTAAGCCAAGAAAAATGTTGAAGGTTG TTTTCGAAAATGGAGTTGAGCCTAAAAGAAAATATGTGGTTTTGTTTTTTTTGGGATAATCTTAAAGAAGGGAGAATATC CACGTTTCTTGCACCTAGACGGATTTGAGCTGAGGATTTCGTTTGTTTGTATGTTCTGGAAAAACCAGGTGAAATTTTTT GCTCATATTTTAATTTTTCAGATAATGTTAGCAATACCATATCCTACACTCTACCACAAATTCCACGCCACGTGGATAAA AAATGATCACTAATCCATGGTCACTGTTATCATTATTATTATGATAAAGGAACTCATTTTGTGGCACACACCAGCTACTA GTTTCAGTTGTGAAGCAAATGGCGTCTTCAGTGATGGCATCTGTGAGTCTCAAACCAGCTGGTTTCAGTCTTGAGAAATC CTCAGTGAGAGGACTTCCTTCCCTTTCAAGATCTTCTGCCTCCTTCAGAGTTGTTGCATCTGGTGGCAAGAAGATTAAAA CTGACACTCCTTATGGTTAGTTAATTTGTATCCATTTTTCTTCAATCAACAATTCAACATGCATATATAGTAGACAATAT TAATTCACTACTCTTTTTAACTTTGTTGTTTTTATGTGAATTATTTTAGGAACTGGTGGTGGCATGAACTTGAGGAATGG AGTTGATGCATCTGGCAGGAAGCCAAGGGTTTGTGATTTAACTTGTTTAGTTATACATATAAGTTTTTTATTACCAGTAT CTTTTTTTTTTGAAAAGCAGTATCTTGAACATGTATGGAAAGCCGGATGAATATATAGAATCAATTTTATAGTTAAAATA AATTGTGACAAGTTGAAATGATATTTGAGTGTACCGGTAAAATTGATTTCATGAGTGAAGAATTGAGTCCTCACAAACAG TTGTTTCTGCGTTGAACATAATCAATTCTAAGGTTTCAAAATTAAATTTCACAACACTACTTACTCTACAAAAACCAATA TTTTTCATAAAGATACATGTTTGATTCGCTTTAAGTAAGATCTCAAGTTCGAGTCTTATATGTAAGAAAATAGAATTGCA TCTGGTTGAAGATACATGCCTTACAACAAAATTATTATACATAATTACATATAGTGTCTTTGGAAGAGCTTGTTTAATAT TATCTCGTGGCATAAATGCATGAATTGATGTTTAGTTAAACTTTTGAAAATAGTTTATAACATCCATGGAAAGCTTTTTG CTTTTATTTTGATAAACTTATGATATTAACTTATGAGTAAAACGCATAGCTGTAGCCTGTAAGTCTGTACTTATTTAATA AGCTTTCTAATAAGTGCAGGATTATTGACCCAAGCGTTTAGATAAGTTGTACACCTGCACTCTTAGATATACAATTCTGT CAACTTGATAGGTTTCTTAAGTTTAAACTTCAGCTTCTTCATAGCGACCAATTTGTGGTAATAGATTTATTTGATAATGT AGTCATTGGTTCTTCTATTGATTACTAATTAATTTTTTCAAGGAGTGAATACATGAAAGAAAAAGAAACTATTAATGTTA ATTGTCATCATGTTTATGATTAATTAAACATGGGTGATGTATTAGTGCTTACTGGATTATTTGCTTAAGAGCTTCCACCA CATTATTAACTACTGAAACTTCAATTCAGGGAAAGGGTGTTTACCAGTATGTGGACAAGTACGGTGCTAATGTTGATGGA TACAGGTAAATTACATCTTTCTTATTCTATGCCTATGTTCCCTTAAAAGGATTCATTTGACTGATCAATTGAGTTCTAAT GTGGCTTCTGAATAACTAAGGATCCAAGTGAAAAAAAATGACTGTTGCACCATAAGTATTCATAAGAAATTCGAATGAGA GATTAAGTTCATACAAGTTACAATTTTGGATATTGATGTTCAGTTTTGATTCATTTTTATCTGATATACAAATCTAACCT GCTTATTCATATTGCATTTGTCTGATTTATTATGCAGTCCTATCTACGATACCAAGGACTGGTCTCCAACCGGTGATGTC TACGCTGGAGGTAATATTTGTTACTTAAATACCTTACATTCAATAAATACTAGCATGGTAGATATAGAAAGGAGTTTTGA GCTTTAATCTATTTGTAAAATTATTTTGAGTTTTATTACTAATTAGAATATGTTCCTCTAGAGTATCTGAATCTATCCTA AATCTGTTTATTGAGACCACCCATGTACTGGCCTCCCACAGTTATTCATTCCTGTAAATTTCACACTCCAGTTGTCCAAC CCTGGAAGGTCCCTTATTGACTCGGCATATGACCAAAATAATCCTCATAAAGGGTAGAGCAACCCTCACTTCTGGATAGA GTTAGACCAAACCCCAATTCTAAGACTTAAGACTAATTTTGAATATGCTCCTATAGTGTAAAATACTGAAAGTGAGTGAA TAATGGGATATCTATCTTAGGATTTCTCTTAAATTATTTGGCGAGCTAATTATATTGTTTGTTCATTTGGAGAATCCTTG TGCTTAAAGGAGCCTTTCTCCTATCCATTTGTGTTTCAACTTTCAACATCATTAAAAATGTTGTTTATCATTGTCAATCT TTCTAATGTTATGACTATAAATAATTAAATGAAAATTAGACAGATTTCACTTGATTGGAATAAAATGTGATTTTATTTTC CTATGATGACAACAAATTTTATAAATGCAGGTACGACTGGCTTGGCTATCTGGGCTGTAACTCTACTTGGTCTTCTGGCT GGGGGAGCTCTTCTTGTCTACAACACAAGTGCTTTGTCACAATAGACTGTGCTAAATTGATATTCTAGTTAAAACATTCC ATGTATCTGTAAAAATGAAGGAAATACTCATGAAGTACTTTCTGGAGAACGTTTTCCTTCACTTCTATAAATATGTGAAC TGTGAAATGTCCTTATGTTTGTATAACCGTGCATATTCATGTTTATGTTAATCTCATTATGGGTTAAATTGTATGCTTTG TGCCATTGGGGCACTTTTCCTTCATGGGTGTGGCCTGTGGGGATAGTGTGTTTTCTCACCATTCGCTATGGTGAGAGATG GAAAGTGAAGCTACTTGATACCTAGCTATCTAGCCAAAATATTTAAATTTTTACAGAACACAGCTTACTAAGAGCATATC TTTGTTGTGTAAATAATCAAACAACTAATCTTCAAGAGAAATGATTGCTAAATCAACTGTTAAGAGTAAACACTCAAGTG CCAGCTCATACAAGCATCTCGGTTCGAGTACTTTCATCTTTCAAAGTTAGAAATTCACATCACCTAGCCTATAAAAATTC AAAAACCATTCACTACAAATCTACAAGTGTTAAAAGCCAAAATTCCTAAAGGTTTGTTAGATCGAAATATGCTCTAGCCA TCAAAATCTGCTTGAAAAAACCAGAAAACTACCTTTTCCATCTTTGCCACAATCTTCATCAGCTTCCTTAACATCAAAAG TGAAACTGCATTCCTGATCATATATCCCATGTATGAATCACATGAAATAAAGCACATAGATTGGCTGGCTACCATCCTTC CTCCATAGCTCAGTTGGGAGGATACAAAAGTAAAGTAGGAATTAGGAAACTAGAACAAAAATTCAAGACCCAAAATGCTC ATCCTTAGAGCTTTTCATTCAACTGACAACTAGCACCAATTTTCCTACATCAAACCAAGCTATCCCTATTTGTACCATTA TAATACTTATCATCATCATCATCATCATCATCATCATCACCTCTCCCCCGGTTGGCTATAAGCGTTAACCATTCTAAAAT GGAACTAATGGTAATA
CDS sequence (LotjaGi3g1v0141700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTGGAAAAACCAGCTACTAGTTTCAGTTGTGAAGCAAATGGCGTCTTCAGTGATGGCATCTGTGAGTCTCAAACC AGCTGGTTTCAGTCTTGAGAAATCCTCAGTGAGAGGACTTCCTTCCCTTTCAAGATCTTCTGCCTCCTTCAGAGTTGTTG CATCTGGTGGCAAGAAGATTAAAACTGACACTCCTTATGGAACTGGTGGTGGCATGAACTTGAGGAATGGAGTTGATGCA TCTGGCAGGAAGCCAAGGGGAAAGGGTGTTTACCAGTATGTGGACAAGTACGGTGCTAATGTTGATGGATACAGTCCTAT CTACGATACCAAGGACTGGTCTCCAACCGGTGATGTCTACGCTGGAGGTACGACTGGCTTGGCTATCTGGGCTGTAACTC TACTTGGTCTTCTGGCTGGGGGAGCTCTTCTTGTCTACAACACAAGTGCTTTGTCACAATAG
Protein sequence (LotjaGi3g1v0141700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFWKNQLLVSVVKQMASSVMASVSLKPAGFSLEKSSVRGLPSLSRSSASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDA SGRKPRGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 7 | 12 | 6 | - | – | |
| Phobius | 13 | 21 | 9 | - | – | |
| PANTHER | 15 | 153 | 139 | 5.7E-78 | – | |
| PANTHER | 15 | 153 | 139 | 5.7E-78 | ||
| Phobius | 22 | 126 | 105 | - | – | |
| Pfam | 55 | 152 | 98 | 7.3E-49 | ||
| TMHMM | 124 | 146 | 23 | - | – | |
| Phobius | 127 | 146 | 20 | - | – | |
| Phobius | 147 | 153 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem II | A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. | ||
| Cellular component | Photosystem II oxygen evolving complex | A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. | ||
| Cellular component | Thylakoid membrane | The pigmented membrane of any thylakoid. |
Expression pattern of LotjaGi3g1v0141700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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