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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0222000 |
| Transcript ID | LotjaGi3g1v0222000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rop guanine nucleotide exchange factor, putative; TAIR: AT5G02010.1 RHO guanyl-nucleotide exchange factor 7; Swiss-Prot: sp|Q9LZN0|ROGF7_ARATH Rop guanine nucleotide exchange factor 7; TrEMBL-Plants: tr|A0A151SMC0|A0A151SMC0_CAJCA Rop guanine nucleotide exchange factor 1; Found in the gene: LotjaGi3g1v0222000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:33561971..33566319) extracted from Lotus japonicus Gifu genome v1.2.
TCTTCTCCTCATCCTTCTAATATAAGCAATGAGAGGTAGTTTACAAAATGGTCCACCACTCTTTCTATCTACCCTTCACT ATTAAACAACCAATGGAAGGTGCTTACACCCAACAAAGAGAAAGAGCATAAACTCAACAACAACAACTTCAACAACTGAA GCAATGTACCTATTAGTTACCTTATAGTGTCCATTAATCAGAATCCACTTTGCACTTTGAGATTCTGGGTGTCTCTTGTC TCAACCTTTTCAAAGTTTGCATTAGAGTTCAACTTTCAGTACAATGACATTGTAATTGTCAAGCAACCACTTATCCCAAT TATATTCCAACAATAATAAGCAGTTCTGTTTTCTTTCTGCTTTTGGAGCCTGGTTTTCTTGAAGGAAGGAAAATCTGCAA TGGAGGTTGTGGGTATGATTGAGAAGAATGAAGTTACTGAAGAAAATAAAGAATGTGAAAGTGGTTGTCATGATGATAAT TTTTCTGAGCTGGTTGAAGAAAAGAGTCTGAGTAGTAGTGAGGACTCATCTTCACCATCTTCAATGGGATGGCCGGTTCA AGAAGTTTCTGCATCTAATTCTAGCAGTCATAGTAGTGCTGAGAAATTGAGTAATGAGAATATTGAGAAACAAGTCTCAG TATTACCAGGTCCAGGTATCAAATTCAATGCTTGTGTAGATAATTGATTTCTAGTTTTTACAAGCAAGTGCTCTAGTTGC ACAATATTAGCATTATGTGTTCTCTAATTTGATTTTGATTTTGATTCTCAGTGCTAGAGATTGAGATGATGAAGGAGAGG TTTGCAAAATTGCTACTTGGAGAAGACATGTCAGGTTGCGGAAAGGGGGTAACTACAGCCTTGGCTATATCCAATGCCAT AACTAATCTATGTGGTATGTGTAGGTGTTATCAGTAAAACAGGTCAATGAGTCTGTTACTAATTTTCAAATTCAAATTTA TTTTATGTGAAGTTTGGCTGTGATGAATTTCAATTACTGTAATTCCTGCTTTTGAATCTGAGGTTCTGATTCTGATTGTT ACCTGCACATTTCCTGAATCTGCAGCCACTCTGTTTGGGCAACTTTGGAGATTGGAACCTCTGGCACCAAAGAAGAAAGC AATGTGGCAAAGAGAAATGGAGTGGCTTCTTTGTGTCAGTGATCATATTGTTGAGTTGAAACCTACATGGCAAACATTTC CGGATGGAAGAAAGGTTGAGGTACAACTTCAGAGATTACTTTAATGTGGAGACTTATTCTTTTTGGACTCTAATTTGAAG TTGAAAGCTTTCTAGTAATTTATGCTAGATTATATGTTTATTTTGAAAATTAAAGCATATAGCTTACAATGCAAATTGAT GTGATTTAGCTGAGTAAGGTACTTGATCATGTTTAGTTGTAAGATCAGTAAATCCACCCATCAATGTAGTACTCTCAAGG TCTTTCTTTCTCTCTTTCTCTCAGTTGAACAGGATAGGTTTGGTTGTTTTGTTTTTGGTGACAAAGCCCGTTTGGATGCA CATCAAAGAACACGCTTTGGAGGCTGAGCTTATCTACTGAGAAAGTACTAGACAAAAATATTACTAGATGAGCTTAAATA AGTTCTCTCTAGTCTGCATCCAAACGAGATCTTACTATTGTTGTTTTTTTAACGTATTTCACAATGTGAATGACAATATA CGCTTATTCAGTGAGGCAGGAGAAAAGATCCAATATCCATGCTTCCTTCATTTTTGTTTGATTAGCCTTTCTAGCTAATA GGTAACATATAGATAGTTGTTTGGTGTTTAACATTGTTTATTCTCAAATGTAAAACAGGTCATGACTTGCAGACCCCGCT CAGATCTTTATGTCAATCTCCCAGCTTTGAGAAAATTAGATAACATGCTTCTTGTAAGATTTTACTTAATATATACCATG CATATTCAACAAGTTTTATGAAGTAGTACTCTAAAGATTTTCTCTTTCAACAGGAAGTACTAGATAGTTTTGTCAACACC GAGTTCAGGTATGTGGATCAAGGTATTCTAGCCCCAGATGGAGATGGTTCATCTTCTTTTCGGAGAGCTCTTCAACGACA AGAGGATAAATGGTGGCTTCCTGTACCTCAAGTTCCTCCTTGTGGTCTCCATGAAAATTCAAGAAGGCAGTTGCAGCACA AGAGGGACTGCACAAACCAAGTATTGAAAGCTGCAATGGCCATGAACAGCATTACTTTATCTGAAATGGAGGTTCCTGAT ACTTATTTGGAGTCTCTTCCAAAGGTTCCCTATTATTTCAAATGTTAATGTATTTTAATTATTTTTCCTTTTTTCTTATG TTGGTTCATTCCTTTTTCTGTTTCTTTCCCTTAGAACTATATATAACCACTCATGCTTGAACCGTAGATTATTATTTTGG GTCGAAAATGACCACATAATCCAAAATCATCAAGGTCGGCCCAAACAACCAGGCCCAATTCTAAGCTCAAGTCAGGTCAA GATCAAATAGAGAGTCTCTAATTAAGTCAAGGAAGAGTGATTTGTGGTTTGTATAGCTTACAATGCAAGCAAACCTATAT ACTTAGCCTTCTCGTTTTGTTCAATTGTATCGGTAGTTAACTGTTTGCCATCTGTCAGCAAAGTGGCATAACAGTTTTAA CCCTGATTGAGTTAGTTTGACCATGATTTTAAGAACTTGGGCTAAGCTTTCCTTAGTCCGACGATGACTTGTCGCAGAAT TGAGGCTGGTTGTTTGGGCTAGCCTTGATGGCTTTTAGTCCATGTGATCAGTCACTGGCTTAGAACAGTAGCCTCAGCCC AACATGTAATGTAAATGAAATGTCGAGATAAACAACGAAAATGCTGAGTTAAGCCATCAAGGCCAGCCCAATCAACTTTT TTTTTTGGTTTCAATACAAGATTATGAAATGACATAATGGTCAAATTGCTGATACAACCCTACTTTCAGACCGCAAGAGC CAGCTTGGGGGATGTCATTTATCGATATATTACATCAGATAATTTTTCTCCTGAATGTCTGTTGGCTCACCTTGATATAT CCACTGAACACCAAGCCATAGAGATTGCAAACAGAGTAGAGGCTTCCATTTACATTTGGCATAAAAAGACTAACTCAAAG CCTGCAAGTCGCGCCACAAGATCAAGTTCAAGATCATCGTGGGAAATGTTCAGGGATCTGATTGTTGAGGGAGAGAAAAG TGAAATGCTTGTAGAGAGAGCAGAAAGCCTTCTTCTGTCCTTGATGCAGCGATTCCCGGGTCTGCCTCAAACCGCCTTGG ACATGAGCAAAATCCAATGCAACAAGGTTTGTGTTTACCATGTTCCATCTTAAATCCTTTCTTTTTTACCTCTTGAATAT TGTAAAGTTTAGAATTAGAACTTCAGCGCAACGGTTAAAAGTTGCTGCCATGTGACCGAGTCTCTTGTGTAAAAACAAGG TAAGGTTACGTACATTATTATGTGGTTGGACCTTTCCCTGGACCCACACATAACGGGAGCTTTAATGTACCAGACAGCCC TTTATTATTATGAAGTTTGATCTCAGTGCTTCACATTGTTCTGTTGTGTAGGATGTAGGGAAATCCATTCTAGAGAGTTA CTCAAGAGTACTGGAGAGTTTGGCTTCTAATATTGTTGCGCGCATTGATGATGTGCTCTATGTAGATGATTTAACCAAGC ATTCTGATCAATTCTCATCTCTACCAAAAGTTGCTGTAATTACTCAAAAGAGCATTTCATCAGCTCCATACTCAATGCCT GTCCAAAGCACTTCGTATAAACCAGCTTTCGGGACACCATGTTTTTCTCCTGCAAAGGGTAAAAGATCACCAATTAATTT TCACAGCACTGATGAAGAGGCAGCATTTGAAATAGACATAGAGTCCAGTGACTGCACAGATGTTAAACTCAATGTTCTGG ACCGGGCATGGCTAGAATCTCAAAGCTGAAACATCTATTCACTGGGAGTTGTCTTTGTTTGTATAATGTATATGAAATAT GTAGAAGGATGGGCATATTTAGAGTGGATAATTTGGAATGAGGTGCCTCTAGTTGGGGTGTTTTATGTTCTAATTACCAC TTCAATCAATGTGAATGATATAGAAAAATAAAATTGAAAATATTTCAAAATCTTTCAAGAAAGTAATTCGTCTGAAATCC AGACAGTATGTGTCTTATCTCAAGAGCTAGCTAGTTTTAAGATTGAGTAATTACAACTGCTATCAGCTAATAGTTACTGC TACAACTGTTCTGTTAGCAGTCAGATGAATTGGTTAGAGCCTTAGAGGTGAGTACCTTACTTAGCTTAGAAGCTCAGCCT CATGCTCCCACAAATAAAGGATTGTACCG
CDS sequence (LotjaGi3g1v0222000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTGTGGGTATGATTGAGAAGAATGAAGTTACTGAAGAAAATAAAGAATGTGAAAGTGGTTGTCATGATGATAA TTTTTCTGAGCTGGTTGAAGAAAAGAGTCTGAGTAGTAGTGAGGACTCATCTTCACCATCTTCAATGGGATGGCCGGTTC AAGAAGTTTCTGCATCTAATTCTAGCAGTCATAGTAGTGCTGAGAAATTGAGTAATGAGAATATTGAGAAACAAGTCTCA GTATTACCAGGTCCAGTGCTAGAGATTGAGATGATGAAGGAGAGGTTTGCAAAATTGCTACTTGGAGAAGACATGTCAGG TTGCGGAAAGGGGGTAACTACAGCCTTGGCTATATCCAATGCCATAACTAATCTATGTGCCACTCTGTTTGGGCAACTTT GGAGATTGGAACCTCTGGCACCAAAGAAGAAAGCAATGTGGCAAAGAGAAATGGAGTGGCTTCTTTGTGTCAGTGATCAT ATTGTTGAGTTGAAACCTACATGGCAAACATTTCCGGATGGAAGAAAGGTTGAGGTCATGACTTGCAGACCCCGCTCAGA TCTTTATGTCAATCTCCCAGCTTTGAGAAAATTAGATAACATGCTTCTTGAAGTACTAGATAGTTTTGTCAACACCGAGT TCAGGTATGTGGATCAAGGTATTCTAGCCCCAGATGGAGATGGTTCATCTTCTTTTCGGAGAGCTCTTCAACGACAAGAG GATAAATGGTGGCTTCCTGTACCTCAAGTTCCTCCTTGTGGTCTCCATGAAAATTCAAGAAGGCAGTTGCAGCACAAGAG GGACTGCACAAACCAAGTATTGAAAGCTGCAATGGCCATGAACAGCATTACTTTATCTGAAATGGAGGTTCCTGATACTT ATTTGGAGTCTCTTCCAAAGACCGCAAGAGCCAGCTTGGGGGATGTCATTTATCGATATATTACATCAGATAATTTTTCT CCTGAATGTCTGTTGGCTCACCTTGATATATCCACTGAACACCAAGCCATAGAGATTGCAAACAGAGTAGAGGCTTCCAT TTACATTTGGCATAAAAAGACTAACTCAAAGCCTGCAAGTCGCGCCACAAGATCAAGTTCAAGATCATCGTGGGAAATGT TCAGGGATCTGATTGTTGAGGGAGAGAAAAGTGAAATGCTTGTAGAGAGAGCAGAAAGCCTTCTTCTGTCCTTGATGCAG CGATTCCCGGGTCTGCCTCAAACCGCCTTGGACATGAGCAAAATCCAATGCAACAAGGTTTGTGTTTACCATGTTCCATC TTAA
Protein sequence (LotjaGi3g1v0222000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVVGMIEKNEVTEENKECESGCHDDNFSELVEEKSLSSSEDSSSPSSMGWPVQEVSASNSSSHSSAEKLSNENIEKQVS VLPGPVLEIEMMKERFAKLLLGEDMSGCGKGVTTALAISNAITNLCATLFGQLWRLEPLAPKKKAMWQREMEWLLCVSDH IVELKPTWQTFPDGRKVEVMTCRPRSDLYVNLPALRKLDNMLLEVLDSFVNTEFRYVDQGILAPDGDGSSSFRRALQRQE DKWWLPVPQVPPCGLHENSRRQLQHKRDCTNQVLKAAMAMNSITLSEMEVPDTYLESLPKTARASLGDVIYRYITSDNFS PECLLAHLDISTEHQAIEIANRVEASIYIWHKKTNSKPASRATRSSSRSSWEMFRDLIVEGEKSEMLVERAESLLLSLMQ RFPGLPQTALDMSKIQCNKVCVYHVPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 72 | 72 | - | – | |
| MobiDBLite | 7 | 37 | 31 | - | – | |
| PANTHER | 29 | 419 | 391 | 1.7E-243 | – | |
| PANTHER | 29 | 419 | 391 | 1.7E-243 | ||
| MobiDBLite | 38 | 72 | 35 | - | – | |
| ProSiteProfiles | 79 | 427 | 349 | 101.569 | ||
| Gene3D | 83 | 223 | 141 | 1.4E-67 | – | |
| Pfam | 88 | 419 | 332 | 3.7E-159 | ||
| Gene3D | 259 | 419 | 161 | 1.0E-46 | – | |
| Gene3D | 289 | 417 | 129 | 1.0E-46 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi3g1v0222000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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