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LotjaGi3g1v0252400.2

Overview

Field Value
Gene ID LotjaGi3g1v0252400
Transcript ID LotjaGi3g1v0252400.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Sec1 family domain-containing protein 2; TAIR: AT2G42700.1 vesicle docking protein; Swiss-Prot: sp|F4IP69|MIP3_ARATH Sec1 family domain-containing protein MIP3; TrEMBL-Plants: tr|A0A0B2RP02|A0A0B2RP02_GLYSO Sec1 family domain-containing protein 2; Found in the gene: LotjaGi3g1v0252400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:42416429..42421906

We have encountered an error when attempting to retrieve your sequence: Unable to fetch BLAST database metadata.

CDS sequence (LotjaGi3g1v0252400.2

We have encountered an error when attempting to retrieve your sequence: Unable to fetch BLAST database metadata.

Protein sequence (LotjaGi3g1v0252400.2

We have encountered an error when attempting to retrieve your sequence: Unable to fetch BLAST database metadata.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 801 801 4.1E-193
PANTHER 1 801 801 4.1E-193
SUPERFAMILY 140 280 141 4.32E-6
MobiDBLite 294 315 22 -
Coils 590 610 21 -
MobiDBLite 603 644 42 -
MobiDBLite 603 626 24 -
SUPERFAMILY 718 799 82 3.53E-11
Gene3D 722 803 82 7.1E-7

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Vesicle docking involved in exocytosis The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis.
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.

Expression data