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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027482
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We have found 30 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.074s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0289119.1
n.a. SNARE-interacting protein KEULE [Medicago truncatula] gi|357477033|ref|XP_003608802.1| chr0 150203067 150216304 +
2 domain predictions
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Lj0g3v0289119.2
n.a. PREDICTED: SNARE-interacting protein KEULE-like [Glycine max] gi|356514152|ref|XP_003525770.1| chr0 150212911 150216304 +
2 domain predictions
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Lj0g3v0289119.3
n.a. PREDICTED: SNARE-interacting protein KEULE-like [Glycine max] gi|356514152|ref|XP_003525770.1| chr0 150212911 150216304 +
2 domain predictions
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Lj2g3v2002600.1
n.a. PREDICTED: SNARE-interacting protein KEULE-like isoform X2 [Cicer arietinum] gi|502160145|ref|XP_004511648.1| chr2 30373807 30380466 +
2 domain predictions
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Lj2g3v3383190.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Glycine max] gi|356509320|ref|XP_003523398.1| chr2 43081597 43085338 -
2 domain predictions
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Lj3g3v1507220.1
n.a. Vesicle docking involved in exocytosis isoform 1 [Theobroma cacao] gi|508700976|gb|EOX92872.1| chr3 19104316 19110973 +
2 domain predictions
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Lj3g3v2735140.1
n.a. PREDICTED: protein transport Sec1a-like [Cicer arietinum] gi|502146555|ref|XP_004506504.1| chr3 33671310 33682138 -
2 domain predictions
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Lj4g3v0335800.1
n.a. PREDICTED: SEC1 family transport protein SLY1-like [Glycine max] gi|356512111|ref|XP_003524764.1| chr4 3795952 3799401 +
2 domain predictions
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Lj5g3v1796800.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 33 homolog [Cicer arietinum] gi|502118380|ref|XP_004496238.1| chr5 25656684 25665914 +
2 domain predictions
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LotjaGi1g1v0274000.1
n.a. Vacuolar protein sorting-associated protein 45 like; TAIR: AT1G77140.1 vacuolar protein sorting 45; Swiss-Prot: sp|O49048|VPS45_ARATH Vacuolar protein sorting-associated protein 45 homolog; TrEMBL-Plants: tr|A0A151QRQ6|A0A151QRQ6_CAJCA Vacuolar protein sorting-associated protein 45 isogeny; Found in the gene: LotjaGi1g1v0274000 LjG1.1_chr1 67189259 67199767 +
2 domain predictions
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LotjaGi1g1v0274000.2
n.a. Vacuolar protein sorting-associated protein 45 like; TAIR: AT1G77140.1 vacuolar protein sorting 45; Swiss-Prot: sp|O49048|VPS45_ARATH Vacuolar protein sorting-associated protein 45 homolog; TrEMBL-Plants: tr|A0A151QRQ6|A0A151QRQ6_CAJCA Vacuolar protein sorting-associated protein 45 isogeny; Found in the gene: LotjaGi1g1v0274000 LjG1.1_chr1 67189497 67198071 +
2 domain predictions
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LotjaGi2g1v0427100.1
n.a. SNARE-interacting protein KEULE; TAIR: AT1G12360.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE; TrEMBL-Plants: tr|I1LGL2|I1LGL2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0427100 LjG1.1_chr2 92456572 92465722 +
2 domain predictions
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LotjaGi2g1v0427100.2
n.a. SNARE-interacting protein KEULE; TAIR: AT1G12360.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE; TrEMBL-Plants: tr|K7K529|K7K529_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0427100 LjG1.1_chr2 92458719 92463267 +
2 domain predictions
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LotjaGi2g1v0427100.3
n.a. SNARE-interacting protein KEULE; TAIR: AT1G12360.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE; TrEMBL-Plants: tr|K7K529|K7K529_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0427100 LjG1.1_chr2 92459412 92463267 +
2 domain predictions
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LotjaGi3g1v0252400.1
n.a. Sec1 family domain-containing protein 2; TAIR: AT2G42700.1 vesicle docking protein; Swiss-Prot: sp|F4IP69|MIP3_ARATH Sec1 family domain-containing protein MIP3; TrEMBL-Plants: tr|A0A0B2RP02|A0A0B2RP02_GLYSO Sec1 family domain-containing protein 2; Found in the gene: LotjaGi3g1v0252400 LjG1.1_chr3 42415214 42422497 +
2 domain predictions
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LotjaGi3g1v0252400.2
n.a. Sec1 family domain-containing protein 2; TAIR: AT2G42700.1 vesicle docking protein; Swiss-Prot: sp|F4IP69|MIP3_ARATH Sec1 family domain-containing protein MIP3; TrEMBL-Plants: tr|A0A0B2RP02|A0A0B2RP02_GLYSO Sec1 family domain-containing protein 2; Found in the gene: LotjaGi3g1v0252400 LjG1.1_chr3 42416429 42421906 +
2 domain predictions
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LotjaGi3g1v0252400.3
n.a. Sec1 family domain-containing protein 2; TAIR: AT2G42700.1 vesicle docking protein; Swiss-Prot: sp|F4IP69|MIP3_ARATH Sec1 family domain-containing protein MIP3; TrEMBL-Plants: tr|A0A0B2RP02|A0A0B2RP02_GLYSO Sec1 family domain-containing protein 2; Found in the gene: LotjaGi3g1v0252400 LjG1.1_chr3 42416539 42421906 +
2 domain predictions
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LotjaGi3g1v0252400.4
n.a. Sec1 family domain-containing protein 2; TAIR: AT2G42700.1 vesicle docking protein; Swiss-Prot: sp|F4IP69|MIP3_ARATH Sec1 family domain-containing protein MIP3; TrEMBL-Plants: tr|A0A0B2RP02|A0A0B2RP02_GLYSO Sec1 family domain-containing protein 2; Found in the gene: LotjaGi3g1v0252400 LjG1.1_chr3 42419203 42421906 +
2 domain predictions
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LotjaGi4g1v0029100.1
n.a. SEC1 family transport protein SLY1; TAIR: AT2G17980.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9SL48|SLY1_ARATH SEC1 family transport protein SLY1; TrEMBL-Plants: tr|K7KPU4|K7KPU4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0029100 LjG1.1_chr4 3603381 3608545 +
2 domain predictions
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LotjaGi4g1v0029100.2
n.a. SEC1 family transport protein SLY1; TAIR: AT2G17980.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9SL48|SLY1_ARATH SEC1 family transport protein SLY1; TrEMBL-Plants: tr|K7KPU4|K7KPU4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0029100 LjG1.1_chr4 3603427 3608042 +
2 domain predictions
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LotjaGi4g1v0029100.3
n.a. SEC1 family transport protein SLY1; TAIR: AT2G17980.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9SL48|SLY1_ARATH SEC1 family transport protein SLY1; TrEMBL-Plants: tr|K7KPU4|K7KPU4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0029100 LjG1.1_chr4 3603469 3608069 +
2 domain predictions
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LotjaGi4g1v0029100.4
n.a. SEC1 family transport protein SLY1; TAIR: AT2G17980.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9SL48|SLY1_ARATH SEC1 family transport protein SLY1; TrEMBL-Plants: tr|K7KPU4|K7KPU4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0029100 LjG1.1_chr4 3604037 3605981 +
2 domain predictions
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LotjaGi4g1v0029100.5
n.a. SEC1 family transport protein SLY1; TAIR: AT2G17980.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9SL48|SLY1_ARATH SEC1 family transport protein SLY1; TrEMBL-Plants: tr|K7KPU4|K7KPU4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0029100 LjG1.1_chr4 3604971 3605981 +
2 domain predictions
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LotjaGi4g1v0213400.1
n.a. SNARE-interacting KEULE-like protein; TAIR: AT1G12360.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE; TrEMBL-Plants: tr|G7JLB0|G7JLB0_MEDTR SNARE-interacting KEULE-like protein; Found in the gene: LotjaGi4g1v0213400 LjG1.1_chr4 49679486 49698454 -
2 domain predictions
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LotjaGi4g1v0213400.2
n.a. SNARE-interacting KEULE-like protein; TAIR: AT1G12360.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE; TrEMBL-Plants: tr|G7JLB0|G7JLB0_MEDTR SNARE-interacting KEULE-like protein; Found in the gene: LotjaGi4g1v0213400 LjG1.1_chr4 49680296 49690869 -
2 domain predictions
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LotjaGi4g1v0213400.3
n.a. SNARE-interacting KEULE-like protein; TAIR: AT1G12360.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE; TrEMBL-Plants: tr|G7JLB0|G7JLB0_MEDTR SNARE-interacting KEULE-like protein; Found in the gene: LotjaGi4g1v0213400 LjG1.1_chr4 49680296 49690869 -
2 domain predictions
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LotjaGi4g1v0213400.4
n.a. SNARE-interacting KEULE-like protein; TAIR: AT1G12360.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE; TrEMBL-Plants: tr|G7JLB0|G7JLB0_MEDTR SNARE-interacting KEULE-like protein; Found in the gene: LotjaGi4g1v0213400 LjG1.1_chr4 49680296 49690957 -
2 domain predictions
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LotjaGi4g1v0213400.5
n.a. SNARE-interacting KEULE-like protein; TAIR: AT1G12360.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE; TrEMBL-Plants: tr|G7JLB0|G7JLB0_MEDTR SNARE-interacting KEULE-like protein; Found in the gene: LotjaGi4g1v0213400 LjG1.1_chr4 49680296 49692454 -
2 domain predictions
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LotjaGi4g1v0213400.6
n.a. SNARE-interacting KEULE-like protein; TAIR: AT1G12360.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE; TrEMBL-Plants: tr|G7JLB0|G7JLB0_MEDTR SNARE-interacting KEULE-like protein; Found in the gene: LotjaGi4g1v0213400 LjG1.1_chr4 49680296 49692454 -
2 domain predictions
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LotjaGi5g1v0270800.1
n.a. Vacuolar protein-sorting-associated protein 33-like protein; TAIR: AT3G54860.1 Sec1/munc18-like (SM) proteins superfamily; Swiss-Prot: sp|Q94KJ7|VPS33_ARATH Vacuolar protein-sorting-associated protein 33 homolog; TrEMBL-Plants: tr|V7BXY6|V7BXY6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0270800 LjG1.1_chr5 58414859 58425048 +
2 domain predictions
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