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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0252400 |
| Transcript ID | LotjaGi3g1v0252400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sec1 family domain-containing protein 2; TAIR: AT2G42700.1 vesicle docking protein; Swiss-Prot: sp|F4IP69|MIP3_ARATH Sec1 family domain-containing protein MIP3; TrEMBL-Plants: tr|A0A0B2RP02|A0A0B2RP02_GLYSO Sec1 family domain-containing protein 2; Found in the gene: LotjaGi3g1v0252400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:42416429..42421906) extracted from Lotus japonicus Gifu genome v1.2.
TCTGTAACATTAAATAAATCTTTCCGTGCATGGACTTGGTGTGTGGCCAATATAGTTTCAGTCACGCCCCTTTTGTTTAA TCTATGAATTTGAATTATGTCCTGCATATATTAGTTATACTTATTGGTTTCAGCTTATGTGACCCTTTCCATGTAGTTAT TTCATAAATGTTACTAACCATCTTTCATTTTCAGATATCAGAGGATATTGAAGGTTCTATTGTGTATTTAGATGCTGGAT CTACAGAGAGCTTCCAATTTATTGGGGCATATCCTGTACTTCTAGATCTTGGAGCACGAGCTATTTGCAGTTTGGAAAAC ATGTCTGCACTTGATGCGGTAAGCAGCAGTTTCATGTGTTGCCCATGTTGTCTTTCTGTGCTTACAGTAAGCTACCAAAA ATTGATCATAATATCATGGAAAGGCTACATTTGTTTATTAAAAATGTGAGGATGTTACCGTTTTCCTTCTTTTCTAAAAG ATTATATTACATGCCACGACATGAAATTAGTATTGCTGATATGAGAGTTGAATTTGCACTTCATGTGATAGTGAGTAGAG GGAAGTAAAATATCAGCTTCAGCGAGTTTGAATTAGTCTGATGATGGATATTTGTAATTATCAGTATATCTTAGATTTAT AGTTTTTATTTGAATTTTTAATACATAGAACTGAACATGTTTGTAAAGAAATAATTCTGAATTCCTTTACGTAATCTTGA GATCATTGATATTCGCCAAGTTGACCTGTATCTAACCAGGTGTTTAGTTGGCACCGTGTGTGTATATATAGGCTTTTCAT CTAATGGCTCAGATTTCTGTGTTCTGGATGTGTTTGAACTGTGATGGTCTAAGACTTTCTTTTGGTAATATATCTTGATC TACTTTTATTTATGGGTCCCTGCCCAGGTGGTTGATTGGAATTCATACTCTGATCATGCAAGGAAACTTGTGGTTATCAC ATCCCGTCTACTAAGTGATGCACATCGATATATTTTACGTTGCCTGAGCTCACATCAAGCTGTTCATCGTTGCATTATAT TTACATCTATCTCAGAGGTGCTTATTTATCATTACTTCTCCTTTCTCTTGCACTCTTAGTTTCTTTCTTGGGCTGTTAAA TTCTGGGTATTATTGTTTCATGTTTTATAAATTTAATGCTGGTCTTACATATCTATTAAAAAGTTATTATACCTCTGGAT GTGAGTGTGTAACCTTTTTCTTTTCGATTTCTGATATTATGGTCTGGGTTCTATCAATTTACAAGCCTTACGGCTTATCT ATGTAATAGACGATTTATGGTTGTACCATAATCCAGCTTTTGTTCTGTTGAGATCTCACATTGACCAGAGATGCAGCCAA TGTAAAGCTTATAAAGGTTACTCATGTGATGAGCTAACTATTGGGTTGAGTTAGGCCTAAGTCCAAATTCAACATGGTAT CCAAGCCTATCTTAGACGTGTTATTGAGCCACCTTCAGATGTTCAATCCTGCAAATTTCACGTTCCAGATGTCCAAACTT GTGAGTAGGGGGAGACAGAGGTGGGGGGTGGGTGTTGAGGTCCCTACAAACTAGAGATATGGTTGAAGTAGTCCTTATAA AGGGTAAGACAATCATCTGTCCTAAGCTACGTTTTGGGGTAGAGTTAGGTCCAAGCCCATTAGGTTGAGCGCAAGTTGTG CCCAAAGCCATAGGTTTAGGGCACATATGTCTGGATGTCACACTTAGGCTTAGTCCAAATTTAAGATGGTATTAGAACCT ATCCTAAATCCAATGTTGTGTCACCACCACAATTCAAAAAATCAACCAAGCCCCACGAATTTCCTATTATGTCTATGCTT CAAATGTCCAATCATGAGACGTATGTGTGGTTATCTTTTGGATCATTTGGGGTTTGGGACTTAGGGAGAGTGGTCGAGTC TCTCCAATTACTCAGCAACCTTGTTCTTTATATATCCAGTTCCTACCAGAATCCTCACTTCATGAGCTAACTTTTGGGGT TGTGTTTGACCTAGTATAAATTTAAGACGTTCATTAGCATGCAGATCTTCATAAAGTAAAGTTGGTTTCATAGTTGTTAA AAAAAGGACTTATCGTTCTTATGATAGGAGCAGAGCTGATTAGCCAATGTAATGAAGTCTGGGCTGACTCTAGTTCTCTT AGACACATAAAATGTTATAGGTGTAACTGTAAGTCAGTATGGCATGAACAGTGGGGTTAGCTTGCTTAATTAGCAATTAT GTTTTCAGTTCTCCTCAAATTAAATCGATAGTAGTTATTTTTTCCTGAGTCTCATGAAGTCATTATTTATCAGCAATAGT AACCATATGGGTAAAATTATTTTATCTATAAATATGATATTGTTGTGATAGAAATCTTAGAATCATTTTGTTCTAATACC TTTTCTCTTATAGCTCTACTTTCTTTTTATCCTTTAGTTTTAAATTTTCTTATACTAATTGAATGCAGATGGCTCACGCA GCATTTCCTGATTCGCCACTGGGACCAGATGCATATAATGAATATGAATCCTTGCTGGTTCAAGATTATGAAGAACTCAT TAAGAAACCGGGGAAAAATCTAGGGCAGATTGGTAGTCTCTTACAGGCAAGATTTAACCTTGAAGATGGAGGAGGTTTGC AGTTTCCTCCCAGTCAAGAGAATGTTTCTCATCTTGAAGCTAGTTCGAGTGGAAGGGATTTTTACGAACAAAATCCATTA GACTACATTGAAGATGCTGGGCAGAAATTAGTTGTTTCAGTTCATCATTTTCCCATGATTTTATGTCCCATTTCACCAAG AGCATTTGTTCTACCTTCTGAAGGATTAGTGGCTGAAACATTCTTATCAGCTGAACATGAAGATTCCATCGGTCCTGGTT TGCCTCCCTTGAGTACTGGCTTGCTATCTGATGCTGATGATGTGCCTCCAGGTGCAACTCTTACAGCACACTTTCTCTAT CATTTGGCAGCCAAGGTAACAAGTGACATGCATTCTTTTGGTAATTTAGTGACTTGATTTCAGGATTTTCTTTTTATTGC TCAGGATTACTGTATTATATAGTCCATACAAACCAGCTTCAAAGGCAGCAATGCAAAATCTTATTAGGGTAAACATAAAG CTATTTCGAATAAAATTACTTGAATAAAACTTTACTATTAAGAATGTTGCCCATTAAAATAGACTCTGAAATGTCGTTTT CAAAATTTTGGTATTTCGTAGCACAAATGGTGTCATTTAATTAATTCATGTAGACTAGTGAATCTCGCTTAATGGGAAAA AGGTTTCTGTTATTGTATTAGTAGTATTGATAATTTTTCCATTAGTGACAGTACAGTACCTTTTTGCATTTTGTTTTTCT CCTCTATTTAGTTTACCTTGACCTTTTTTCTATTGCTTATAATATAGATGGACTTGAAGATGGAAATTTTCTCCATTGGT GATATGTCGAAAACTGTTGGAAAATTTCTGACAGACATGTCAAGTCTTTATGACGTTGGCCGTCGTAAGCGATCAGCGGG GTTGTTACTCATTGATCGCACACTCGATCTTCTCACTCCTTGCTGTCATGGAGACTCACTTGTTGACCGTATCTTTTCTT CTTTGCCCCGTAGAAATAGAACAACTACCCATGCCCAAGGTAAAGGTTCAGGAAACCAGTTAAAACCTGGCTCTTCCCAT CTGCAACGTGCTCCTTTAGATGTTCAGATACCACTTGCAAAGATCCTTAATGAAGAAAATTGGAAAATAGACAATTTTCG GCTTTTAGAAAGTATTGAAGCTTTTATGTGTGGGTGGAATTCTGGTAACTCTGATTCGCAGATTGCAGGTTTGATTAATC TTAGTCAGAAGATTCATGACAAGCCTAGTCCCTCTGATGTAGAGATACTTACGGGGTCTTTTGTCTCCTCTGAATGTTTT CGTGGAATACCATTCCTGGAAGCCATAATAGATAGAAGAACAAAAGATGGGGCCTTATTGGTAAAGAAATGGCTACAAGA AACTTTGCGCAAGGAAAATGTCACTGTGAATGTGAAATCTCGTCCTGGTCTTGTTACCAAGCCAGAATTGCAAGCTATGA TCAAAGCATTATCCAGCAGACAATCATCTTTGCTAAGGAACAAAGGAATTATTCAATTAGCTTCAGCCACATTATTTGCT CTTGAGGAATCAAATACTGCGAAATGGGATGCATTTAGCAGTGCCGTGAAAATTCTGAGTGTAAGTTCAGGAGAAACCAG TCAAAGTCTCGCCGCTCAAATTTGTGATCTCATCAATAAGAGTGCTCTGTTGGGATCACAGGTAAATAAAGGGAAAGGGG AGATCTCAAAGGGGTTGATTTCTTTGCAAGATGCTTTGCTGTTAATGATCATTGGATATATTTTGGCTGGTGAGAATTTT CCAACATCTGGTTCCGATGGGCCGTTTTCTTGGCAAGAGGAACATTTGTTAAAAGAAGCTGTTGTAGATGCCATTCTTGA AAATCCATCTGCAGTAAACCTCAAGTTTCTAGATGGGCTGAGGGAAGAGCTTGAAACTAATGCAAGGAAGTCAAAATCAG AGGAATCTACTGAAGCCCCGTCAAAACTGGACATTGATGATTTTGATGATGACCAGTGGGGAAAATGGGGTGATGAAGAT GGGGATGATGACAACAAAAATGAACAAGTTTTTGGTGATATGCAACTTAAGTTGGAGTTGCGGGATCGGGTGGATAACTT TTTCAAATTTCTTCACAAGTTATCTGATCTAAAAAGAAGAAATCTACCGCTGAGGGATGGATCATTGTCTGTGGAAAGCA ATTTTGACGAAGATACCTATGTGGGAAAAGGGTTAGTTTATAAGCTACTAACAAGGGTATTGGGCAAATATGATGTGCCT GGGTTAGAATATCATTCTTCCACCGTGGGGCGCTTGTTTAAGAGTGGATTTGGGAGATTTGGCCTTGGTCAGGTGATTAT GGTTTCTTATCCAATGCATGACTAAAGTTCACTTTTTCAAATGTGCTAAATGCTAATCATTCTTTTGTTTGTTTTTCCTG TCAATTCAAATGCTGCAGGCTAAACCAAGTCTTGCCGATCAAAATGTCATTTTGGTGTTTGTCATTGGGGGTATTAATGG ACTTGAGGTAAAATTCAAGTCTTTGTCTCCTAATTCCCCTCGTCAATGAAATAAGTCAAATAACTAGATGGTAACAGTTT TTCCATGAAAGTTTTTTGAACTTAACCAATATTCTCTGGAAGATGACATTGGTTTTTTCCTTTCATCTGTGTTTTATAAA TTTTGATCCTTTATCTGTGTGGAACGGTAGCATAATTTTGCCTAATTTTTTTACTTTTCTATAACGTAGGTGCGTGAAGC TCAGGAGGCGTTGGCTGAAAGTGGAAGACCTGACATAGAGTTGCTTGTTGGTGGAACAACTCTCCTTACTCCTGGTGACA TGCTCGATTTACTGCTAGGGGACTTGAGTTACTTTTAA
CDS sequence (LotjaGi3g1v0252400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCACTTGATGCGGTGGTTGATTGGAATTCATACTCTGATCATGCAAGGAAACTTGTGGTTATCACATCCCGTCT ACTAAGTGATGCACATCGATATATTTTACGTTGCCTGAGCTCACATCAAGCTGTTCATCGTTGCATTATATTTACATCTA TCTCAGAGATGGCTCACGCAGCATTTCCTGATTCGCCACTGGGACCAGATGCATATAATGAATATGAATCCTTGCTGGTT CAAGATTATGAAGAACTCATTAAGAAACCGGGGAAAAATCTAGGGCAGATTGGTAGTCTCTTACAGGCAAGATTTAACCT TGAAGATGGAGGAGGTTTGCAGTTTCCTCCCAGTCAAGAGAATGTTTCTCATCTTGAAGCTAGTTCGAGTGGAAGGGATT TTTACGAACAAAATCCATTAGACTACATTGAAGATGCTGGGCAGAAATTAGTTGTTTCAGTTCATCATTTTCCCATGATT TTATGTCCCATTTCACCAAGAGCATTTGTTCTACCTTCTGAAGGATTAGTGGCTGAAACATTCTTATCAGCTGAACATGA AGATTCCATCGGTCCTGGTTTGCCTCCCTTGAGTACTGGCTTGCTATCTGATGCTGATGATGTGCCTCCAGGTGCAACTC TTACAGCACACTTTCTCTATCATTTGGCAGCCAAGATGGACTTGAAGATGGAAATTTTCTCCATTGGTGATATGTCGAAA ACTGTTGGAAAATTTCTGACAGACATGTCAAGTCTTTATGACGTTGGCCGTCGTAAGCGATCAGCGGGGTTGTTACTCAT TGATCGCACACTCGATCTTCTCACTCCTTGCTGTCATGGAGACTCACTTGTTGACCGTATCTTTTCTTCTTTGCCCCGTA GAAATAGAACAACTACCCATGCCCAAGGTAAAGGTTCAGGAAACCAGTTAAAACCTGGCTCTTCCCATCTGCAACGTGCT CCTTTAGATGTTCAGATACCACTTGCAAAGATCCTTAATGAAGAAAATTGGAAAATAGACAATTTTCGGCTTTTAGAAAG TATTGAAGCTTTTATGTGTGGGTGGAATTCTGGTAACTCTGATTCGCAGATTGCAGGTTTGATTAATCTTAGTCAGAAGA TTCATGACAAGCCTAGTCCCTCTGATGTAGAGATACTTACGGGGTCTTTTGTCTCCTCTGAATGTTTTCGTGGAATACCA TTCCTGGAAGCCATAATAGATAGAAGAACAAAAGATGGGGCCTTATTGGTAAAGAAATGGCTACAAGAAACTTTGCGCAA GGAAAATGTCACTGTGAATGTGAAATCTCGTCCTGGTCTTGTTACCAAGCCAGAATTGCAAGCTATGATCAAAGCATTAT CCAGCAGACAATCATCTTTGCTAAGGAACAAAGGAATTATTCAATTAGCTTCAGCCACATTATTTGCTCTTGAGGAATCA AATACTGCGAAATGGGATGCATTTAGCAGTGCCGTGAAAATTCTGAGTGTAAGTTCAGGAGAAACCAGTCAAAGTCTCGC CGCTCAAATTTGTGATCTCATCAATAAGAGTGCTCTGTTGGGATCACAGGTAAATAAAGGGAAAGGGGAGATCTCAAAGG GGTTGATTTCTTTGCAAGATGCTTTGCTGTTAATGATCATTGGATATATTTTGGCTGGTGAGAATTTTCCAACATCTGGT TCCGATGGGCCGTTTTCTTGGCAAGAGGAACATTTGTTAAAAGAAGCTGTTGTAGATGCCATTCTTGAAAATCCATCTGC AGTAAACCTCAAGTTTCTAGATGGGCTGAGGGAAGAGCTTGAAACTAATGCAAGGAAGTCAAAATCAGAGGAATCTACTG AAGCCCCGTCAAAACTGGACATTGATGATTTTGATGATGACCAGTGGGGAAAATGGGGTGATGAAGATGGGGATGATGAC AACAAAAATGAACAAGTTTTTGGTGATATGCAACTTAAGTTGGAGTTGCGGGATCGGGTGGATAACTTTTTCAAATTTCT TCACAAGTTATCTGATCTAAAAAGAAGAAATCTACCGCTGAGGGATGGATCATTGTCTGTGGAAAGCAATTTTGACGAAG ATACCTATGTGGGAAAAGGGTTAGTTTATAAGCTACTAACAAGGGTATTGGGCAAATATGATGTGCCTGGGTTAGAATAT CATTCTTCCACCGTGGGGCGCTTGTTTAAGAGTGGATTTGGGAGATTTGGCCTTGGTCAGGCTAAACCAAGTCTTGCCGA TCAAAATGTCATTTTGGTGTTTGTCATTGGGGGTATTAATGGACTTGAGGTGCGTGAAGCTCAGGAGGCGTTGGCTGAAA GTGGAAGACCTGACATAGAGTTGCTTGTTGGTGGAACAACTCTCCTTACTCCTGGTGACATGCTCGATTTACTGCTAGGG GACTTGAGTTACTTTTAA
Protein sequence (LotjaGi3g1v0252400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSALDAVVDWNSYSDHARKLVVITSRLLSDAHRYILRCLSSHQAVHRCIIFTSISEMAHAAFPDSPLGPDAYNEYESLLV QDYEELIKKPGKNLGQIGSLLQARFNLEDGGGLQFPPSQENVSHLEASSSGRDFYEQNPLDYIEDAGQKLVVSVHHFPMI LCPISPRAFVLPSEGLVAETFLSAEHEDSIGPGLPPLSTGLLSDADDVPPGATLTAHFLYHLAAKMDLKMEIFSIGDMSK TVGKFLTDMSSLYDVGRRKRSAGLLLIDRTLDLLTPCCHGDSLVDRIFSSLPRRNRTTTHAQGKGSGNQLKPGSSHLQRA PLDVQIPLAKILNEENWKIDNFRLLESIEAFMCGWNSGNSDSQIAGLINLSQKIHDKPSPSDVEILTGSFVSSECFRGIP FLEAIIDRRTKDGALLVKKWLQETLRKENVTVNVKSRPGLVTKPELQAMIKALSSRQSSLLRNKGIIQLASATLFALEES NTAKWDAFSSAVKILSVSSGETSQSLAAQICDLINKSALLGSQVNKGKGEISKGLISLQDALLLMIIGYILAGENFPTSG SDGPFSWQEEHLLKEAVVDAILENPSAVNLKFLDGLREELETNARKSKSEESTEAPSKLDIDDFDDDQWGKWGDEDGDDD NKNEQVFGDMQLKLELRDRVDNFFKFLHKLSDLKRRNLPLRDGSLSVESNFDEDTYVGKGLVYKLLTRVLGKYDVPGLEY HSSTVGRLFKSGFGRFGLGQAKPSLADQNVILVFVIGGINGLEVREAQEALAESGRPDIELLVGGTTLLTPGDMLDLLLG DLSYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 801 | 801 | 4.1E-193 | – | |
| PANTHER | 1 | 801 | 801 | 4.1E-193 | ||
| SUPERFAMILY | 140 | 280 | 141 | 4.32E-6 | ||
| MobiDBLite | 294 | 315 | 22 | - | – | |
| Coils | 590 | 610 | 21 | - | – | |
| MobiDBLite | 603 | 644 | 42 | - | – | |
| MobiDBLite | 603 | 626 | 24 | - | – | |
| SUPERFAMILY | 718 | 799 | 82 | 3.53E-11 | ||
| Gene3D | 722 | 803 | 82 | 7.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vesicle docking involved in exocytosis | The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi3g1v0252400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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