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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0278400 |
| Transcript ID | LotjaGi3g1v0278400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CCR4-NOT transcription complex subunit 2; TAIR: AT1G07705.2 NOT2 / NOT3 / NOT5 family; Swiss-Prot: sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2; TrEMBL-Plants: tr|A0A0B2RMT6|A0A0B2RMT6_GLYSO Putative NOT transcription complex subunit VIP2; Found in the gene: LotjaGi3g1v0278400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:55225611..55233146) extracted from Lotus japonicus Gifu genome v1.2.
CAGAGTTCTATTTGCAGTCTTCTCTGAACGGATCTGCGTCAAATCTTCCAGATGGTACGGGGCGGTCTTTTGCGACGTCT TTCTCTGGTCAGTCGGGTGTAGCCTCCCCAGTTTTTCATCACTCTGGTGAGAAAATTTTGCGCAAGTCAATCCTTTTTCT CCTCTCCAATAGTTGCATAATTTCTAGCTTCTTCCTGCAGGAACTATTCAGGGGTTGCACAATATTCACGGGAGCTTTAA TGTTCCCAACATGCCGAATACACTTACATCAAGAAACTTAACAATAAATCCTACTGGAGGGGTTCAACAACCTACAGCGA ATCTTTCTAGTGGAAGATTTGCGTCAAATAATCTACCAGTTGCTTTGTCACAGGTATATGTGAATACACATAGGGTTTTA AATTGCGGTTGTGGTTATGACTTATGTCGCGAAATTGCGGACAAGCGCGTGTTGATGCTGCTGCGATTGCGGTCGTGACA TTGTTGTAGAGACTCAAAATCCTTTTACGTTGCGGCCGTAATGGCGTTTGTGGGCCGCAATTTAAAACCCTATTGAGCAT CTTGAGAGTAATAGCTGAGCGTAATTACTGTTATGTCTGACATTTTGTTTCTACTGTTGCTGTGTTGCATAATTTGATGT ATTTTCATGTCTATCAATCATATTTGCAGCTTTCTCATGGAAGTTCCCATGGACATTCAGGAGTCAACAGTAGAGGAGGT ATAAGTGTTGTCGGAAACCCTGGATTTAATACTAGCTCAAATGGAGTTACTGGTTCTATTCCTGGGATTCTTCCAACTTC TGCTGCAATTGGTAACAGAAATGCTGTTCCAGGGTTGGGAGTATCCCCAATTTTGGGAAATGCAGGTTCTCGAATCACAA GTTCTATGGGAAATATGGTTGGTGGAGGGAACATTGGGAGGATAAGCTCTGGAGGATTGTCTGTTTCTGGTCTTGCTTCA CGTTTAAATTTAAGTGGAGGCAGTGGATCTGGTGGCATAGGTGTACCAGGACAAAATCGTTTAATGAGTGGTGTGCTTCC ACAAGGTATGTATTTTGGTAGTCACAAGTGCATTGAAGTGACATGAAAGTATTGTTTTCTCCAAAGAAATATCTGATTGT GTTGGGTTGTCTTCATTTGTTTGGTTGAGATTTCTTTCAAAAGGTTACTCAGATATTAAAGTGATGCAAACTTTGTTCAT ATATTTCTTTTACTTATAAAGTTATTTCTATCTAGAAAGGTTTATTACTGCACTCCTTTTTAATGATGAACTTTTCATAT CTTACTAAGTGGATTGTTTTGGACAAAGTTTTCTTATTATCTACTTTGTAGCATTAGATAACAAGTTGTTTGACTACCAA GAAATTAGTCACAATGTTCGCAGGTTAATATAATTTTTTTTTCTAGCTGTGACCCTTGGGCATTACCTTACATTATCTTT ATTTGAGGTTTATACCCCTTGATATATGATTTGTTATGACTTATGAGGAATAGTATTTTGTCTAAACTTTCCTGTTTGTT TTATGGGGAGAATTTGGATACAAAATTGAGTTGATCTAACTTTTCTTTCTCTCCTTTTATAATGAAAGTTAAATTTTCAT TTCTTCCCATATTACCGAGATTAGACTACTGTGATGTTGATGGGTTAGGCAGGCCCCAAAGCTGTCATGAATCATGATAT GATGGTAGATGATATAGGGATCATCATGAAGCAAGGTGGCTGCTAATCAAGACACCCATAATTTCAGAAAAAAATAAGTG TATTAGACAGGGCAAGTGTCATAGTGGGCACTATTTTCATTTTATCACTGTACATAGTAGGTGTGCTAGTGCTTCTTTGT TGAAGACACCATCCCATGGGGGTTTATAATGGAACCTCATTGCCATGGCAGTATGGCACTCTGCCATGGTGTGGCCATTG ACAACACTGGAGGACTATTCTCCTCAACAGGAAAGAGAAATATGCAATTGATATCATAATAATGTGTGTAGATTGTGATT TGTGCATAATCTTTCTGTTTGCATCTGCTGTTTCTTGTCTACATGCTTTGAATTTGTTGTTTCCTTTATGTGTCTGTGCT ATATCCTTTGTTTTCTCAAGTGTTTGAATGTTATATATATATATATGTTGGTCTGCTACTAAGGTACCTACATGTGCTAG TAAGTAGTAATACCTGTTAAAGAACTATTGCTTTTTGATGATTTAGTAAAATGCTTGATCGTTTTTAAATTATTTTTTCT GTAATACTGGGTTGATTCAATATATAGATTAAATGTTACTTTGTGGTGATAACCACTTTTTGATTCAGGATCACCACAAG TAATGTCAATGTTAGGAAATTCTTATCCTAGTGCTGGAGGTCAGCTTTCACAAAGCCATGTTCAAGCATTAAATAACTTG AACTCTATGGGCATGTTGAATGATTTGCATTCCGGTGACAGTTCTCCTTTTGACATCAATGAGTTCCCTCAACTAACAAG TCGTCCTAGTTCTGCTGGTGGGTCTCAGGGACAGTTGGGTAGGTGAAGGATAATGTTGTCTTGGTTAAGATGTTGGAGGA GGGTCTTGGAGTAGGTCCTGATGTAAATCTATAAATTTCAGGTTCTTTACGAAAACAGGGTCTGGGAGGAGGCCCCATTG GCCAACAAAATCAAGAGTTTAGAATTGAAAGTGAAGATTTCCCAGCTTTACCAGGATACAAAGGTACTGCATATTGTTTG GCTAATATACGCGAGCTAATTGGTTACACATTTCCTGTTTGGAAATTTAGCAGCTGAATTGTGTTGTTTTCTTGTTTTGG AGGTTCTAGAATGTAGAATGAAATTTATGCTTTCTCTTTTGGAAGGGCTTCTGGATATTATTTTGTGTTTAGCTTCGTCA ATTTTTGGCATTTGCTTCTTAATGTTGTGCAGTATTCATCACTGTTTTCTCCCTATATTCTTCTGAGTGGTCTTTATGTG GTGCTGACTGGGCTTCGAACCAAGATCATCTTTGCTCTACTTCAGGCTCTTGCATTCTTCTTTGCCCCTTATAGCTCGTT CCAGTACTGAGGTTGAATATTGCAGTCTGGCCCAAACCAATGAGGATATGTTCTGGATTCAAATTCTACTTAGTGAGATT GGAGTTCTATTTCTTCCTACTATGGTGTATTCTTTGTGACAATCTTAGCACTGTTCTTCTTTCCCATAACCCAGTTATTC ACACGTACCAAAAAATGGGGTATGATCTCTTTGTTCAAGAACTTGTTCTTGCGAAGTGACTAGTTGTTTGTAGCTTACTT GCCTGCTGAAGGTTAACTGGCAGATGCCCTGAACAAGTCTCTTCCTCCTCAGTGAATCCTTTTTTTTGCGTGACAAACTC AAGGTGTTTGAAAAAACTCAGTTTGCCTTCTCTTCCCAAGTTTTAGAGAATACGGGGATATTAGAGTATAATAGAGTTAG CTTTAGGTTAGCGAAGTTAGTCACATGTTGCTTAGGTTAGGTTAAAGTTGGTTAAAACCTCAACAAACTCTGTTAGAGAT TGTTAGTCGCAGTTATGATGTGCAACACTATAAATATCACTTTCTGTCTCTACCTCACTCTATCTCTGATAGTTTTGATT GGTATTGACTGCATAATGGCTAGCTCCTCTCTCCAGTGTTTCACTCATGTCTTACACTGTAAATCTTACACCATTCAATA AGTTTTTATCGGATAATTGAATTTTGAAATCCACCATTTGATTGAAAGTCTCTACTACCATATAGATCATATCTATAGAA TTTTACATCAATCCAAAATCATTTAGTATGACATTTAGATAAATCAAGATTAACGCCATATAGACAGTTCAATATATATG AAAATAAGAATTATTTGATTACAAGTTTATACTTTTTAAAATTTGGCACGAATAATGAAGATGATGAAAAATTGTTATTC AACGGTTGGATTGACAAAAATAATTCTATCAATACTTATTGATGGTGTAAGATTAGTGGTGTAAGAGACGGGTGTAAGTT GATCCCTCCTCCATATGAGTGTGTGTGTCTATGGCTGTTTGATCTGTGTTGAGGATGCTTTGATGGTTCCTACTGTTATA GAGCAATTAACTGGGTCTTAAGTTTGCACTGGTGCCAACTTTGACAGCCTGTGGAGTTCATATCTCGGTAGTTGCCTGTA TCTGATGACATTCTAATTATTTTCGGTCTACTTTGTTTACAGAACTGAGAACTCTAATTGTCTTGAAGTTAGTAAGTTGG CTTCTGCATTTGTATTTGACCATAGTATTTGTAATAGGCGGCAGTGCAGATTTTGCTATGGATATGCACCAAAAAGAACA ACTTCATGACAATCCTGTGTCAATGATGCAATCGCAGCATTTCCCTGTAAGTTTCTTCTAGTAAAAGATTGAGATATTTT TTCTATGCATACACATCCTTATTCCATTTTTTATGATATTAATTGATAAAAAATTCAAAATCTATTCTCAATCTTATTTG CATTCAATCTGCAGATGGGTAGGTCTACTGGTTTCAGTTTGGGGGGATCATACTCATCACATCGTTCACAGCAACAACAG CAGCATGCTCCTTCAGTCAGTAGCAGTGGGGTCTCTTTTTCACCTGTAAACAGCCAAGATCTTCTCCACCTGCATGGATC GGATATTTTTCCATCTTCGCACTCTACTTATCATTCACAGGTATGCTAGATCTACCTCTGTGAGGTACTTGCTTTTGTAT GAGAATGCGCCTCTGATCTCGTTAATTTTAACTGTGTTACGATATCATATGGGATGCCCATGTGAACTGAAATTGTGTAT TCCCATCAAAGCAAGGTTTTTACATTCTAATGACATACTGTTTTTGGTTCAGACCAGCGGACCTCCTGGAATTGGAATAA GGCCTCCAAATTCTCCAAATACAATTTCTGGTGTGGGATCATATGACCAGCTCATCCAGCAATATCAACAACACCAGAAC CAATCCCAGTTCCGCTTTCAGCAAATGTCAGCTGCAAATCAGTCTTTTAGGGATCAGAGCATGAAGTCTATGCAAACTGT GCAATCTAGTCCAGATCCATTTGGTTTGCTTGGCTTGTTAAGTGTGATCAGGATGAGCGATCCTGATCTGACATCTCTTG CTCTCGGAGTTGATCTTACAACACTAGGGTTGAATTTGAATTCATCAGAAAATCTTCACAAGACTTTTGCGTCTCCGTGG TCTGACGAACCAGCTAAGAGTGATCCAGAGTTCACTGTGCTACAATGTTATAATGCTAAACAACCTCCCGCCCTGCACGT GAGTTGTTCTTTATAATTTCACTGTCCTTATTTTCCTATGTTTTATTTGATCTAAGACTTTTTGCATGATGCAGCAAGGA TATTTTTCAAAGTTCTCTGTGGAAACATTATTTTATATATTTTACAGGTACTTTTTGATGATTGATCCTATTTATTCATT TTCACACTATCTAGCTTGTTATTACTTATTATAAGTTGTAATTAAAGTTTATGTTTGACCTTTATTGCAGCATGCCTAGA GATGAAGCACAACTATATGCAGCACATGAACTGTATGCATTCGTTCTCATACACCTTTTTATTGTGTTGTTTTTGAATGA TTTGTTCTTATTTTCAAATTATTTTAAGATTATTAAGTTCTGGCAAATTGTTTTTTGATTTGGGAATAATTAGCTTTATA TATGGTTTATCAAGCACATATACCACTCTTAATAAATGGTAACCATTCATCCATATGATTATTCTTAAATTTGAAATATT GTCAGGAATTTTTAACTTGTAACTCTTGGTAGTTTTTGTTGAATATCTGTTTAGATTTAGTTTATTATTAGTCTTATCTC ATTGAGATATAGTTTAGATTTGTTTCTCTATTTTAGATTAGTATCTATTTAAAGAGAGATAGGTTTAGATAGATTTAGTT TCTTTTTATCTATTTGTTAGTCTATATATATTGTAGTCTAGTCAAGTATTATCAATGAAATACAAGTATTATTTTATCAA ATTCAAGTTGGTGTCAGAGCGAGTTTCGATCCTACCGCTGTGAGGGGGCTCCTCCCCCGTGAGCCCCCTCATGGTGACCT TCCAAATCTCTTTGGATTATTTTCACTCGTCCTGTGCTTCCGCGCTTGTTCGTTCTAGCCTTTTCTTACGGCCTCGTTTC TTTCTGATTATGGTCCCCTTTGTCTTGGAACCCTATTGACCCTTGTTTCTTAATACTTAAAACAACCGCGCCTTCTTCTT CGGCGCGTGAAGGTAACGCACAAACTTGAACTCGACGCGACGACCACATACATGTTCGTCCGTTGTAGTCTAGTTGGTCA GGATATTTGGCTCTCCCTCCTGGTTCTGTTCCAGATTTGTTTTCTCCAGATTTTCCTTCCTTTAATGCAGTTGCGTGATT GGAAGAAATTGTGGGAATTGATTCAACAATTGTTTACTCAAGAATTCTTGATTGGAATGACATAATAATTCTTCACTGCC AGCGAGAGTATTGGTTACATGAAGTGGAAATATGGAATGCCAATGCGTTGGGATGGTGATATTGGAAGTTTCTGATGATG CCAGAATGAAGCAGTACCATGTGGCTCTTTGGTCCAATCCAGTTCTCAATTAGTGTGTTGGGTTGTTCTAGATTCTTGTT TTTGGTTTCTTGGTTTTGGTTGGCACAGTGTGGTTTTGGAGTTGGAAAAGATTTTTGCTCTCTATTAAAGTGGAGAATTG GTTTTGCATTGTGTGGTTTGTTGGTGTATAAATTTTGGACTATTTTTGGGAATATCTCTCTCCGGCAGCAGCTGCTTCTC AAGTTGGTGTATAAATTCGCCAAGACTGTCATTATTAAGGGATATCTATTAAGATAATTTTCTTCTTGGGTTCGATTTGT TACAAGCTTAAAGCTAAGTAAGCTTTAGCTTGAGGGGGAGTGTTGAATATCTGTTTAGATTTAGTTTACTATTAGTCTTA TCTCATTGAGATATAGTTTAGATTTGTTTCTCTATTTTAGATTAGTATCTATTTAAATAGAGATAATATCTATTTAAATA GAGATAGGTTTAGATAGATTTAGTTTCTTTTTATCTATTTGTTAGTCTATATATACTGTAGTCTAGTCAAGTATTATCAA TGAAATACAAGTATTATTTTATCAAATTCAAGTGTTTTATCCATGCAATAATTACTGACAAGGTAGGGTCTTTGCTCTCA GTTACAAACGGGGCTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAGAGTTCCCAACATGGAGCCACTTGTCAAA ACAAACGCCTACGAGAGAGGATCTTACCATTGTTTTGATCCAAGCAGTTTTAAAACGGTCCAGAAGGTGAGTTTTTGTAA ACATATACTGTATATACTGTATGAGTCGACACCCGCACCCACCCGACTTCAATTATATGTTTTATCATTCTTGAACAATT TTGTCCCATTCAGGCCTCTAATGCTCAACCTCCTCGCAGGATAATTTTGTTCTCTATTATGAAATGGTGGAAAAGAGACC CCTGGCTTAACATTGA
CDS sequence (LotjaGi3g1v0278400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAATACACTTACATCAAGAAACTTAACAATAAATCCTACTGGAGGGGTTCAACAACCTACAGCGAATCTTTCTAG TGGAAGATTTGCGTCAAATAATCTACCAGTTGCTTTGTCACAGCTTTCTCATGGAAGTTCCCATGGACATTCAGGAGTCA ACAGTAGAGGAGGGTTGGGAGTATCCCCAATTTTGGGAAATGCAGGTTCTCGAATCACAAGTTCTATGGGAAATATGGTT GGTGGAGGGAACATTGGGAGGATAAGCTCTGGAGGATTGTCTGTTTCTGGTCTTGCTTCACGTTTAAATTTAAGTGGAGG CAGTGGATCTGGTGGCATAGGTGTACCAGGACAAAATCGTTTAATGAGTGGTGTGCTTCCACAAGGATCACCACAAGTAA TGTCAATGTTAGGAAATTCTTATCCTAGTGCTGGAGGTCAGCTTTCACAAAGCCATGTTCAAGCATTAAATAACTTGAAC TCTATGGGCATGTTGAATGATTTGCATTCCGGTGACAGTTCTCCTTTTGACATCAATGAGTTCCCTCAACTAACAAGTCG TCCTAGTTCTGCTGGTGGGTCTCAGGGACAGTTGGGTTCTTTACGAAAACAGGGTCTGGGAGGAGGCCCCATTGGCCAAC AAAATCAAGAGTTTAGAATTGAAAGTGAAGATTTCCCAGCTTTACCAGGATACAAAGGCGGCAGTGCAGATTTTGCTATG GATATGCACCAAAAAGAACAACTTCATGACAATCCTGTGTCAATGATGCAATCGCAGCATTTCCCTATGGGTAGGTCTAC TGGTTTCAGTTTGGGGGGATCATACTCATCACATCGTTCACAGCAACAACAGCAGCATGCTCCTTCAGTCAGTAGCAGTG GGGTCTCTTTTTCACCTGTAAACAGCCAAGATCTTCTCCACCTGCATGGATCGGATATTTTTCCATCTTCGCACTCTACT TATCATTCACAGACCAGCGGACCTCCTGGAATTGGAATAAGGCCTCCAAATTCTCCAAATACAATTTCTGGTGTGGGATC ATATGACCAGCTCATCCAGCAATATCAACAACACCAGAACCAATCCCAGTTCCGCTTTCAGCAAATGTCAGCTGCAAATC AGTCTTTTAGGGATCAGAGCATGAAGTCTATGCAAACTGTGCAATCTAGTCCAGATCCATTTGGTTTGCTTGGCTTGTTA AGTGTGATCAGGATGAGCGATCCTGATCTGACATCTCTTGCTCTCGGAGTTGATCTTACAACACTAGGGTTGAATTTGAA TTCATCAGAAAATCTTCACAAGACTTTTGCGTCTCCGTGGTCTGACGAACCAGCTAAGAGTGATCCAGAGTTCACTGTGC TACAATGTTATAATGCTAAACAACCTCCCGCCCTGCACCAAGGATATTTTTCAAAGTTCTCTGTGGAAACATTATTTTAT ATATTTTACAGCATGCCTAGAGATGAAGCACAACTATATGCAGCACATGAACTTTACAAACGGGGCTGGTTTTATCACAA AGAACATCGTTTGTGGTTTATAAGAGTTCCCAACATGGAGCCACTTGTCAAAACAAACGCCTACGAGAGAGGATCTTACC ATTGTTTTGATCCAAGCAGTTTTAAAACGGTCCAGAAGGATAATTTTGTTCTCTATTATGAAATGGTGGAAAAGAGACCC CTGGCTTAA
Protein sequence (LotjaGi3g1v0278400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPNTLTSRNLTINPTGGVQQPTANLSSGRFASNNLPVALSQLSHGSSHGHSGVNSRGGLGVSPILGNAGSRITSSMGNMV GGGNIGRISSGGLSVSGLASRLNLSGGSGSGGIGVPGQNRLMSGVLPQGSPQVMSMLGNSYPSAGGQLSQSHVQALNNLN SMGMLNDLHSGDSSPFDINEFPQLTSRPSSAGGSQGQLGSLRKQGLGGGPIGQQNQEFRIESEDFPALPGYKGGSADFAM DMHQKEQLHDNPVSMMQSQHFPMGRSTGFSLGGSYSSHRSQQQQQHAPSVSSSGVSFSPVNSQDLLHLHGSDIFPSSHST YHSQTSGPPGIGIRPPNSPNTISGVGSYDQLIQQYQQHQNQSQFRFQQMSAANQSFRDQSMKSMQTVQSSPDPFGLLGLL SVIRMSDPDLTSLALGVDLTTLGLNLNSSENLHKTFASPWSDEPAKSDPEFTVLQCYNAKQPPALHQGYFSKFSVETLFY IFYSMPRDEAQLYAAHELYKRGWFYHKEHRLWFIRVPNMEPLVKTNAYERGSYHCFDPSSFKTVQKDNFVLYYEMVEKRP LA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 2 | 61 | 60 | 1.9E-279 | ||
| PANTHER | 2 | 61 | 60 | 1.9E-279 | – | |
| PANTHER | 58 | 561 | 504 | 1.9E-279 | ||
| PANTHER | 58 | 561 | 504 | 1.9E-279 | – | |
| MobiDBLite | 166 | 213 | 48 | - | – | |
| MobiDBLite | 166 | 201 | 36 | - | – | |
| MobiDBLite | 257 | 298 | 42 | - | – | |
| MobiDBLite | 316 | 345 | 30 | - | – | |
| MobiDBLite | 359 | 378 | 20 | - | – | |
| Gene3D | 383 | 562 | 180 | 1.8E-67 | ||
| Pfam | 434 | 555 | 122 | 3.2E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | CCR4-NOT core complex | The core of the CCR4-NOT complex. In Saccharomyces the CCR4-NOT core complex comprises Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0278400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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