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NOT2 / NOT3 / NOT5 family
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: probable NOT transcription complex subunit VIP2-like [Glycine max] gi|356558361|ref|XP_003547475.1| | 5 | ||
| – | PREDICTED: probable NOT transcription complex subunit VIP2-like [Glycine max] gi|356539082|ref|XP_003538029.1| | 5 | ||
| – | PREDICTED: probable NOT transcription complex subunit VIP2-like [Glycine max] gi|356542593|ref|XP_003539751.1| | 5 | ||
| – | PREDICTED: general negative regulator of transcription subunit 3-like isoform X1 [Cicer arietinum] gi|502107056|ref|XP_004493142.1| | 5 | ||
| – | CCR4-NOT transcription complex subunit 3; TAIR: AT5G18230.1 transcription regulator NOT2/NOT3/NOT5 family protein; Swiss-Prot: sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3; TrEMBL-Plants: tr|I1ML37|I1ML37_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0640200 | 13 | ||
| – | CCR4-NOT transcription complex subunit 3; TAIR: AT5G18230.1 transcription regulator NOT2/NOT3/NOT5 family protein; Swiss-Prot: sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3; TrEMBL-Plants: tr|I1ML37|I1ML37_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0640200 | 13 | ||
| – | CCR4-NOT transcription complex subunit 2; TAIR: AT1G07705.2 NOT2 / NOT3 / NOT5 family; Swiss-Prot: sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2; TrEMBL-Plants: tr|K7LPS4|K7LPS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0366900 | 8 | ||
| – | CCR4-NOT transcription complex subunit 2; TAIR: AT1G07705.2 NOT2 / NOT3 / NOT5 family; Swiss-Prot: sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2; TrEMBL-Plants: tr|I1LK90|I1LK90_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0366900 | 8 | ||
| – | CCR4-NOT transcription complex subunit 2; TAIR: AT1G07705.2 NOT2 / NOT3 / NOT5 family; Swiss-Prot: sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2; TrEMBL-Plants: tr|A0A0B2RMT6|A0A0B2RMT6_GLYSO Putative NOT transcription complex subunit VIP2; Found in the gene: LotjaGi3g1v0278400 | 8 | ||
| – | CCR4-NOT transcription complex subunit 2; TAIR: AT1G07705.2 NOT2 / NOT3 / NOT5 family; Swiss-Prot: sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2; TrEMBL-Plants: tr|A0A0B2RMT6|A0A0B2RMT6_GLYSO Putative NOT transcription complex subunit VIP2; Found in the gene: LotjaGi3g1v0278400 | 8 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 10.00 |