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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0280900 |
| Transcript ID | LotjaGi3g1v0280900.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein Rab-8A; TAIR: AT3G46060.1 RAB GTPase homolog 8A; Swiss-Prot: sp|P28186|RAE1C_ARATH Ras-related protein RABE1c; TrEMBL-Plants: tr|Q40219|Q40219_LOTJA RAB8E; Found in the gene: LotjaGi3g1v0280900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56202800..56206403) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGCTCCACCGGCTAGGGCTCGTGCGGATTACGATTACCTCATAAAGCTTCTCTTGATTGGCGACAGTGGTAAGTC TCTCACAATGCTGTGGATGTTCTGTTTAATTTTAGGTCAACTTTTTGATTTTTCCCCTTACAATTGGAAGAGTTTTCTTT TGGTAATTTTTGTTCTGATTTTATCTCTAATGTATCTTTCATGACCTAGTTTGAGGCAAATGTACTTAATTTTAGACTTG AATCTTTTCATGACCTAGTTTGAGGGAGCAATTGAATAATTGTTTCTGCTACTCCTTAATACAATTAAGGTGCCAAAGGG TTGAATTGCGAATTCCTTTTGATCCTATTCCGGGCAAGTCTTTTTGTGCCATTGTGTAAATTTGAGCCTTTCTGTTCTCC TTGATACAGTGATGTGTGATGTCACGCATCAAATTGGGCCATGACCAATCTGTAAAGCAAGGACAGAGATAACGACACCG GATGATGCGGACAAACCCGCTCAAACAATGTGTAAAACATGGGAAATTGGGACACATCATGCCCTCGTACATACACATAT TAACTCCATGAGAGGAGTTAGTGTCTATTTGAATACTAGTTGAGCATAAAATGGGAAAACTTTTATCCTATTTCATAAGA AGAGTTACGTTTATGTTTTGTGTTGAAGTGCTTGTGAAAGTTTGTTAGTATCAGTGCAAACTGATAATGAAACACACCTT TAATATCAACCATATGGTTTGATCAGAATCATTTCTCTCACTTACTTAGTTGATACCTCTCATGAATATATAAAAGTCTG AAAATTATAAAGAAAACAAAATGGAAGTTTTTCAATGCAAGCAATGTACTTCAAGTGTCAAGCCACAGTTGGAATGTCAG TTAAGTGTTTGAGAGGTGTCCCAGCTGTGTCTAACACATGTCCAAGCCTTTAGAAAATGATTTTTTAATAAAGGACATTA TGAGGAGTGTCTTGCACATGTCATATTAGTGTTGTATGGCTTTGAAGTGTGTTCACTACTCTGACACATTAAGAAGAAGA AATGTCCGTACCTCATAACTGGTAGCTTCTGCAAAATGCTTGTAAGCTGAAGCTCTAATTTCTTGAATTTTGCTCTAGAG AAAAGAAGAAGTATGTCTTCAGTTGGTGTTTTACACGAACTGTTTTCCCATGCCTGATTCTTCACTCCAATATGATATAT GTCATAGTTTCTTCTACCCTTTATGTTATTTTTTATTACAGGATGTGTTGAGTAGAAGGTTTACTATAGACTACATAGAA ATGAAAAATATTGTGGCCGTAGAAATTGCAAGAGTATAAATAGTAATTTGGCTTATAAAGTCCTTAATTTGCACAAACCT GATCTGATACTCTTGTTTGCAGGTGTTGGAAAGAGTTGTCTTCTTCTGCGTTTCTCCGATGGTTCTTTCACAACTAGTTT CATTACAACCATAGGGTGAGTTTTTTACAATTTAGTTGTAGAAGTGTGGAGTCTTGTATGCGTGAAGTTTCCCTAAAATC TCAGAGTCTATCTTCCTGATGCAGCATTGACTTTAAGATAAGGACCATTGAGCTGGATGGAAAGCGGATCAAGCTCCAAA TTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACTGGTAAGATATACGATCCATACACGTCCTTGTATTAT CTTTTACTGTTTGTATGTGTCACGTGGAAAGACATTGCTTTCCAATGGCATTTGTGACACTCAGTGATTCAGGATGAAAA GGTTGAGGGAAAAAGAGAAACGAATATGAAGAAGAATAAAAATGATAAAAAGATTATAGGGAGAAGGAAAATAAAACAGA TAGATAAAGTAAGCTCTGAGAAGTGAGAAATACCATAATGGTTATTCAATGTAAAAACTGCTGCGGCAAACTATAATGGG TAGTTCACAATTCAAATTCAAAGTTATTTCTAATTTGTAAATCCTAGGATTAAGATAAAAGTCAAGTCGCCCGAATTTCA GTCCTTTGCCTAAGTCTAAATAAGTCTATACTCCAATGCTTCAATTGCAAACCTTGCAGAATTTATAGCAAAGAAGTTTC TGGGAGCATCTTCCGTGTGGACTTTTTTCAAAACTGACTGATCAGTTGTTAATGTAAAGATCACTAGTGAACCTCTTTTT GGATTATGTTAAATGTAATTTCATTTGTGGTACCTGCTATTTTGGTGTTTTGATGTGTCACAATTAAAGTCCATGTATCC AGTTGATTGGTACTGTTTTATTGATGCTACTCTAGATTTCTTTTATTCTCCACTGGTGTTAAAATCATGTTACCAACGAG AATATTTGTGATGTATTTTATTGTGGCAATCTTTACTAAATTCCATATCTTTATTTTCAGCTTACTATCGTGGTGCTATG GGCATATTGCTAGTTTATGATGTTACAGACGAATCTTCATTCAACAGTAAAGTTTCCACTTGTTGCTTCGGTTTAAAATT TGGAGATATGTGCTTTTCTCTTCAAAATCTTTCTCATTCGGAATATTTATCCAGCTTGTTCTAATTTCAGATATTAAGAA TTGGATTCATAACATTGAGCAACATGCCTCAGACAATGTTAACAAGATACTGGTGGGGAACAAAGCTGACATGGATGAAA GCAAAAGGGTATGCAAACATATCTAGGACCTTTCTCTTTGTGAGTGAGTTTATAAGAACAAATATCTAGGACCCTCAACA CAGCTGTGTTATGCATATCTCAGTCAAAGTAGCAAAAGAAATGTGCTATTATTGTCATCTAATGTACTTTCTTTATCGTT GTTATTATGCTAGAACAAGATAGCCTTTTTTGCACCATTGAGCAGCATGTTTATTTAAGATTCAACACAAAAATGATCCG ACACTTGCACATTTACCTATGTGTTTTCCATGCCACTTTTAGCTGAAGCTAGTTTTTCTCCTATTACTCAAGTTTTCAGC TCACCAACCTGAATTCTTAACAAACATGCTTCATGATGTTGGAAAAACCATGTCAAATTGTTAGTGAATGAAAACCTTTC ATTTGAGTTAAAGAGGGGAATGGGTTAAGAGGATTGGGTTCTTGATTGATGCCATTCATGGAATTAGTTACATCTGGGGT CCTCTCTTTCTCAGATGCATGTCAAATTATTTCTGGAATAATAGATAAACCTTGACCTTTCTTTCTAGGCTGTGCCTACC TCCAAGGGCCAAGCACTTGCCGATGAGTATGGAATCAAATTCTTTGAAACAGTAAGTGATTTATAGCTGAGAATGTAGCA ACTTCCTGAAGTTTCTTATTATCTTTGCAAACTGAAAAGATTTCTGTTGCAGAGTGCAAAGACAAATCTAAATGTGGAGG AAGTTTTCTTCTCGATTGCAAGAGATATAAAACAAAGGCTCGCTGACACAGACTCTTCTAAGACAGAGGTATTTGGACTT CCTCTTCCTTTAATTCATGGATAGGTTTATACTGTTAATCGCTTTCTGTCCATCAAATTCAGTGTCTCATGATATTTTCA TTGCAGCCGACAGGAATTAAAATTAACCCACAAGATAAGGGATCTGCGGGAGAGGCTGCACAAAAGTCAGCTTGCTGTGG TTGA
CDS sequence (LotjaGi3g1v0280900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTCCACCGGCTAGGGCTCGTGCGGATTACGATTACCTCATAAAGCTTCTCTTGATTGGCGACAGTGGTGTTGG AAAGAGTTGTCTTCTTCTGCGTTTCTCCGATGGTTCTTTCACAACTAGTTTCATTACAACCATAGGCATTGACTTTAAGA TAAGGACCATTGAGCTGGATGGAAAGCGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATT ACAACTGATATTAAGAATTGGATTCATAACATTGAGCAACATGCCTCAGACAATGTTAACAAGATACTGGTGGGGAACAA AGCTGACATGGATGAAAGCAAAAGGGCTGTGCCTACCTCCAAGGGCCAAGCACTTGCCGATGAGTATGGAATCAAATTCT TTGAAACAAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCGATTGCAAGAGATATAAAACAAAGGCTCGCT GACACAGACTCTTCTAAGACAGAGCCGACAGGAATTAAAATTAACCCACAAGATAAGGGATCTGCGGGAGAGGCTGCACA AAAGTCAGCTTGCTGTGGTTGA
Protein sequence (LotjaGi3g1v0280900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI TTDIKNWIHNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA DTDSSKTEPTGIKINPQDKGSAGEAAQKSACCG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 82 | 78 | 1.6E-27 | – | |
| PANTHER | 6 | 82 | 77 | 5.4E-98 | – | |
| PANTHER | 6 | 82 | 77 | 5.4E-98 | – | |
| SUPERFAMILY | 11 | 164 | 154 | 2.7E-49 | ||
| ProSiteProfiles | 11 | 192 | 182 | 26.069 | – | |
| TIGRFAM | 14 | 81 | 68 | 7.1E-16 | ||
| PRINTS | 16 | 37 | 22 | 9.5E-28 | – | |
| SMART | 16 | 158 | 143 | 7.7E-75 | – | |
| SMART | 17 | 158 | 142 | 1.7E-18 | – | |
| Pfam | 17 | 82 | 66 | 2.7E-26 | ||
| SMART | 18 | 158 | 141 | 7.8E-11 | – | |
| SMART | 21 | 193 | 173 | 0.0043 | – | |
| PRINTS | 39 | 55 | 17 | 9.5E-28 | – | |
| PRINTS | 57 | 79 | 23 | 9.5E-28 | – | |
| Gene3D | 83 | 192 | 110 | 1.0E-24 | – | |
| Pfam | 83 | 156 | 74 | 1.3E-20 | ||
| PANTHER | 83 | 188 | 106 | 5.4E-98 | – | |
| PANTHER | 83 | 188 | 106 | 5.4E-98 | – | |
| MobiDBLite | 160 | 193 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0280900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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