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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SM00175
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 303 results. Now displaying 1 of 7 with 50 rows per page. This search has taken 0.045s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0040489.1
n.a. PREDICTED: ras-related protein RABB1c-like [Glycine max] gi|356555789|ref|XP_003546212.1| chr0 13178014 13178640 +
1 domain prediction
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Lj0g3v0049129.1
n.a. PREDICTED: ras-related protein RHN1-like [Glycine max] gi|356511351|ref|XP_003524390.1| chr0 16608266 16611103 +
1 domain prediction
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Lj0g3v0061569.1
n.a. PREDICTED: ras-related protein RABH1b-like [Cicer arietinum] gi|502152574|ref|XP_004508989.1| chr0 20638042 20656085 -
1 domain prediction
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Lj0g3v0065699.1
n.a. RAB5B [Lotus japonicus] gi|1370180|emb|CAA98167.1| chr0 22893740 22896551 -
1 domain prediction
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Lj0g3v0073439.1
n.a. RecName: Full=Ras-related protein Rab11Dgi|1370148|emb|CAA98180.1| RAB11D [Lotus japonicus] gi|3024502|sp|Q40194.1|RB11D_LOTJA chr0 27574760 27575227 -
1 domain prediction
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Lj0g3v0073759.1
n.a. RAB1A [Lotus japonicus] gi|1370162|emb|CAA66447.1| chr0 27733432 27734422 +
1 domain prediction
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Lj0g3v0073769.1
n.a. RAB1A [Lotus japonicus] gi|1370162|emb|CAA66447.1| chr0 27733457 27734558 +
1 domain prediction
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Lj0g3v0073999.1
n.a. RAB8E [Lotus japonicus] gi|1370198|emb|CAA98176.1| chr0 27828420 27832511 +
1 domain prediction
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Lj0g3v0074009.1
n.a. RAB8E [Lotus japonicus] gi|1370198|emb|CAA98176.1| chr0 27828450 27832624 +
1 domain prediction
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Lj0g3v0096129.1
n.a. PREDICTED: ras-related protein RABA1b-like [Cicer arietinum] gi|502089777|ref|XP_004489015.1| chr0 40489653 40491751 -
1 domain prediction
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Lj0g3v0110699.1
n.a. RAB1B [Lotus japonicus] gi|1370164|emb|CAA98159.1| chr0 48036753 48041296 +
1 domain prediction
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Lj0g3v0110709.1
n.a. RAB1B [Lotus japonicus] gi|1370164|emb|CAA98159.1| chr0 48038915 48041111 +
1 domain prediction
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Lj0g3v0144629.1
n.a. PREDICTED: ras-related protein RABA4d-like [Glycine max] gi|356495927|ref|XP_003516822.1| chr0 66515590 66515988 -
1 domain prediction
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Lj0g3v0160049.1
n.a. RAB8C [Lotus japonicus] gi|1370194|emb|CAA98174.1| chr0 75129734 75134259 -
1 domain prediction
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Lj0g3v0167719.1
n.a. ROP6 [Lotus japonicus] gi|324028908|gb|ADY16660.1| chr0 79851378 79855987 +
1 domain prediction
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Lj0g3v0172059.1
n.a. RAB11F [Lotus japonicus] gi|1370152|emb|CAA98182.1| chr0 82545425 82550776 +
1 domain prediction
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Lj0g3v0172069.1
n.a. RAB11F [Lotus japonicus] gi|1370152|emb|CAA98182.1| chr0 82545506 82550962 +
1 domain prediction
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Lj0g3v0179539.1
n.a. Ras-related protein Rab11A [Medicago truncatula] gi|357461039|ref|XP_003600801.1| chr0 87172804 87177320 -
1 domain prediction
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Lj0g3v0180509.1
n.a. PREDICTED: ras-related protein RABA4d-like [Cicer arietinum] gi|502122919|ref|XP_004497938.1| chr0 87860940 87862777 +
1 domain prediction
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Lj0g3v0196629.1
n.a. RAN GTPase 3 [Theobroma cacao] gi|508783701|gb|EOY30957.1| chr0 95864421 95866730 +
1 domain prediction
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Lj0g3v0204699.1
n.a. RecName: Full=Ras-related protein Rab11Dgi|1370148|emb|CAA98180.1| RAB11D [Lotus japonicus] gi|3024502|sp|Q40194.1|RB11D_LOTJA chr0 101672777 101674793 +
1 domain prediction
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Lj0g3v0204709.1
n.a. RecName: Full=Ras-related protein Rab11Dgi|1370148|emb|CAA98180.1| RAB11D [Lotus japonicus] gi|3024502|sp|Q40194.1|RB11D_LOTJA chr0 101673923 101674754 +
1 domain prediction
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Lj0g3v0216229.1
n.a. ADP-ribosylation factor [Elaeis guineensis] gi|353441154|gb|AEQ94161.1| chr0 109804536 109808718 -
1 domain prediction
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Lj0g3v0244709.1
n.a. PREDICTED: septum-promoting GTP-binding protein 1-like [Glycine max] gi|356501505|ref|XP_003519565.1| chr0 126923763 126926830 -
1 domain prediction
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Lj0g3v0259589.1
n.a. RecName: Full=Ras-related protein Rab11A; Flags: Precursorgi|1370142|emb|CAA98177.1| RAB11A [Lotus japonicus] gi|3024500|sp|Q40191.1|RB11A_LOTJA chr0 134915789 134919296 +
1 domain prediction
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Lj0g3v0271919.1
n.a. Ras-related protein Rab7 [Medicago truncatula] gi|357468399|ref|XP_003604484.1| chr0 140920029 140922821 -
1 domain prediction
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Lj0g3v0271929.1
n.a. n.a. chr0 140920140 140922929 -
1 domain prediction
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Lj0g3v0286759.1
n.a. PREDICTED: ADP-ribosylation factor-like protein 8B-like [Cicer arietinum] gi|502096772|ref|XP_004490821.1| chr0 148988615 148991154 -
1 domain prediction
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Lj0g3v0286999.1
n.a. RAB7A [Lotus japonicus] gi|1370182|emb|CAA98168.1| chr0 149175672 149182737 +
1 domain prediction
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Lj0g3v0287009.1
n.a. RAB7A [Lotus japonicus] gi|1370182|emb|CAA98168.1| chr0 149175857 149182737 +
1 domain prediction
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Lj0g3v0294639.1
n.a. RAS-like protein [Cicer arietinum] gi|6469129|emb|CAB61746.1| chr0 153125310 153128378 +
1 domain prediction
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Lj0g3v0295669.1
n.a. GTP-binding protein ras-like protein [Medicago truncatula] gi|357474509|ref|XP_003607539.1| chr0 153619275 153622041 +
1 domain prediction
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Lj0g3v0303619.1
n.a. RAB1C [Lotus japonicus] gi|1370166|emb|CAA98160.1| chr0 158114308 158117498 +
1 domain prediction
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Lj0g3v0303629.1
n.a. RAB1C [Lotus japonicus] gi|1370166|emb|CAA98160.1| chr0 158114342 158117771 +
1 domain prediction
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Lj0g3v0313349.1
n.a. RAB1X [Lotus japonicus] gi|1370172|emb|CAA98163.1| chr0 163617040 163620134 +
1 domain prediction
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Lj0g3v0328649.1
n.a. PREDICTED: ras-related protein RABC1-like [Cicer arietinum] gi|502124073|ref|XP_004498372.1| chr0 171797435 171802355 +
1 domain prediction
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Lj0g3v0337519.1
n.a. RecName: Full=GTP-binding nuclear protein Ran1Agi|1370203|emb|CAA98187.1| RAN1A [Lotus japonicus] gi|1710007|sp|P54765.1|RAN1A_LOTJA chr0 176785197 176787292 +
1 domain prediction
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Lj0g3v0345339.2
n.a. Ras-like protein [Medicago truncatula] gi|357440495|ref|XP_003590525.1| chr0 181185757 181188862 +
1 domain prediction
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Lj0g3v0356479.1
n.a. RAB8D [Lotus japonicus] gi|1370196|emb|CAA98175.1| chr0 187778630 187782397 -
1 domain prediction
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Lj0g3v0359599.1
n.a. Ras-related protein RABA2a [Medicago truncatula] gi|357445241|ref|XP_003592898.1| chr0 189319725 189320903 +
1 domain prediction
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Lj1g3v0415230.1
n.a. PREDICTED: rac-like GTP-binding protein ARAC10-like [Cicer arietinum] gi|502133958|ref|XP_004501950.1| chr1 5194250 5198555 +
1 domain prediction
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Lj1g3v1318230.1
n.a. RAB1Y [Lotus japonicus] gi|1370174|emb|CAA98164.1| chr1 15976223 15979360 +
1 domain prediction
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Lj1g3v1318240.1
n.a. RAB1Y [Lotus japonicus] gi|1370174|emb|CAA98164.1| chr1 15976372 15979484 +
1 domain prediction
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Lj1g3v1912870.1
n.a. RecName: Full=GTP-binding nuclear protein Ran1Agi|1370203|emb|CAA98187.1| RAN1A [Lotus japonicus] gi|1710007|sp|P54765.1|RAN1A_LOTJA chr1 22735039 22737443 -
1 domain prediction
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Lj1g3v2185260.1
n.a. RecName: Full=Rac-like GTP-binding protein RAC1; Flags: Precursorgi|2117168|emb|CAA98189.1| RAC1 [Lotus japonicus] gi|51701717|sp|O04369.1|RAC1_LOTJA chr1 26303395 26306459 +
1 domain prediction
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Lj1g3v2185280.1
n.a. PREDICTED: rac-like GTP-binding protein RAC1 isoform 2 [Vitis vinifera] gi|225428021|ref|XP_002278633.1| chr1 26308038 26309966 +
1 domain prediction
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Lj1g3v2922940.1
n.a. RAB1B [Lotus japonicus] gi|1370164|emb|CAA98159.1| chr1 32864861 32870662 +
1 domain prediction
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Lj1g3v2922940.2
n.a. PREDICTED: ras-related protein RABD2a-like [Glycine max] gi|356568583|ref|XP_003552490.1| chr1 32864861 32869944 +
1 domain prediction
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Lj1g3v2922950.1
n.a. RAB1B [Lotus japonicus] gi|1370164|emb|CAA98159.1| chr1 32865973 32870253 +
1 domain prediction
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Lj1g3v3329660.1
n.a. RAB11G [Lotus japonicus] gi|1370154|emb|CAA98183.1| chr1 37765738 37767573 -
1 domain prediction
 –