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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SM00174
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 234 results. Now displaying 1 of 5 with 50 rows per page. This search has taken 0.059s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0040489.1
n.a. PREDICTED: ras-related protein RABB1c-like [Glycine max] gi|356555789|ref|XP_003546212.1| chr0 13178014 13178640 +
1 domain prediction
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Lj0g3v0049129.1
n.a. PREDICTED: ras-related protein RHN1-like [Glycine max] gi|356511351|ref|XP_003524390.1| chr0 16608266 16611103 +
1 domain prediction
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Lj0g3v0061569.1
n.a. PREDICTED: ras-related protein RABH1b-like [Cicer arietinum] gi|502152574|ref|XP_004508989.1| chr0 20638042 20656085 -
1 domain prediction
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Lj0g3v0065699.1
n.a. RAB5B [Lotus japonicus] gi|1370180|emb|CAA98167.1| chr0 22893740 22896551 -
1 domain prediction
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Lj0g3v0073769.1
n.a. RAB1A [Lotus japonicus] gi|1370162|emb|CAA66447.1| chr0 27733457 27734558 +
1 domain prediction
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Lj0g3v0073999.1
n.a. RAB8E [Lotus japonicus] gi|1370198|emb|CAA98176.1| chr0 27828420 27832511 +
1 domain prediction
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Lj0g3v0074009.1
n.a. RAB8E [Lotus japonicus] gi|1370198|emb|CAA98176.1| chr0 27828450 27832624 +
1 domain prediction
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Lj0g3v0096129.1
n.a. PREDICTED: ras-related protein RABA1b-like [Cicer arietinum] gi|502089777|ref|XP_004489015.1| chr0 40489653 40491751 -
1 domain prediction
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Lj0g3v0110699.1
n.a. RAB1B [Lotus japonicus] gi|1370164|emb|CAA98159.1| chr0 48036753 48041296 +
1 domain prediction
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Lj0g3v0110709.1
n.a. RAB1B [Lotus japonicus] gi|1370164|emb|CAA98159.1| chr0 48038915 48041111 +
1 domain prediction
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Lj0g3v0160049.1
n.a. RAB8C [Lotus japonicus] gi|1370194|emb|CAA98174.1| chr0 75129734 75134259 -
1 domain prediction
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Lj0g3v0167719.1
n.a. ROP6 [Lotus japonicus] gi|324028908|gb|ADY16660.1| chr0 79851378 79855987 +
1 domain prediction
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Lj0g3v0172059.1
n.a. RAB11F [Lotus japonicus] gi|1370152|emb|CAA98182.1| chr0 82545425 82550776 +
1 domain prediction
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Lj0g3v0244709.1
n.a. PREDICTED: septum-promoting GTP-binding protein 1-like [Glycine max] gi|356501505|ref|XP_003519565.1| chr0 126923763 126926830 -
1 domain prediction
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Lj0g3v0259589.1
n.a. RecName: Full=Ras-related protein Rab11A; Flags: Precursorgi|1370142|emb|CAA98177.1| RAB11A [Lotus japonicus] gi|3024500|sp|Q40191.1|RB11A_LOTJA chr0 134915789 134919296 +
1 domain prediction
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Lj0g3v0271919.1
n.a. Ras-related protein Rab7 [Medicago truncatula] gi|357468399|ref|XP_003604484.1| chr0 140920029 140922821 -
1 domain prediction
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Lj0g3v0271929.1
n.a. n.a. chr0 140920140 140922929 -
1 domain prediction
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Lj0g3v0286999.1
n.a. RAB7A [Lotus japonicus] gi|1370182|emb|CAA98168.1| chr0 149175672 149182737 +
1 domain prediction
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Lj0g3v0287009.1
n.a. RAB7A [Lotus japonicus] gi|1370182|emb|CAA98168.1| chr0 149175857 149182737 +
1 domain prediction
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Lj0g3v0295669.1
n.a. GTP-binding protein ras-like protein [Medicago truncatula] gi|357474509|ref|XP_003607539.1| chr0 153619275 153622041 +
1 domain prediction
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Lj0g3v0303619.1
n.a. RAB1C [Lotus japonicus] gi|1370166|emb|CAA98160.1| chr0 158114308 158117498 +
1 domain prediction
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Lj0g3v0303629.1
n.a. RAB1C [Lotus japonicus] gi|1370166|emb|CAA98160.1| chr0 158114342 158117771 +
1 domain prediction
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Lj0g3v0313349.1
n.a. RAB1X [Lotus japonicus] gi|1370172|emb|CAA98163.1| chr0 163617040 163620134 +
1 domain prediction
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Lj0g3v0328649.1
n.a. PREDICTED: ras-related protein RABC1-like [Cicer arietinum] gi|502124073|ref|XP_004498372.1| chr0 171797435 171802355 +
1 domain prediction
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Lj0g3v0345339.2
n.a. Ras-like protein [Medicago truncatula] gi|357440495|ref|XP_003590525.1| chr0 181185757 181188862 +
1 domain prediction
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Lj0g3v0356479.1
n.a. RAB8D [Lotus japonicus] gi|1370196|emb|CAA98175.1| chr0 187778630 187782397 -
1 domain prediction
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Lj0g3v0359599.1
n.a. Ras-related protein RABA2a [Medicago truncatula] gi|357445241|ref|XP_003592898.1| chr0 189319725 189320903 +
1 domain prediction
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Lj1g3v0415230.1
n.a. PREDICTED: rac-like GTP-binding protein ARAC10-like [Cicer arietinum] gi|502133958|ref|XP_004501950.1| chr1 5194250 5198555 +
1 domain prediction
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Lj1g3v1318230.1
n.a. RAB1Y [Lotus japonicus] gi|1370174|emb|CAA98164.1| chr1 15976223 15979360 +
1 domain prediction
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Lj1g3v1318240.1
n.a. RAB1Y [Lotus japonicus] gi|1370174|emb|CAA98164.1| chr1 15976372 15979484 +
1 domain prediction
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Lj1g3v2185260.1
n.a. RecName: Full=Rac-like GTP-binding protein RAC1; Flags: Precursorgi|2117168|emb|CAA98189.1| RAC1 [Lotus japonicus] gi|51701717|sp|O04369.1|RAC1_LOTJA chr1 26303395 26306459 +
1 domain prediction
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Lj1g3v2185270.3
n.a. Rac3 [Gossypium hirsutum] gi|62240094|gb|AAX77217.1| chr1 26303437 26305255 +
1 domain prediction
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Lj1g3v2185280.1
n.a. PREDICTED: rac-like GTP-binding protein RAC1 isoform 2 [Vitis vinifera] gi|225428021|ref|XP_002278633.1| chr1 26308038 26309966 +
1 domain prediction
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Lj1g3v2922940.1
n.a. RAB1B [Lotus japonicus] gi|1370164|emb|CAA98159.1| chr1 32864861 32870662 +
1 domain prediction
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Lj1g3v2922940.2
n.a. PREDICTED: ras-related protein RABD2a-like [Glycine max] gi|356568583|ref|XP_003552490.1| chr1 32864861 32869944 +
1 domain prediction
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Lj1g3v2922950.1
n.a. RAB1B [Lotus japonicus] gi|1370164|emb|CAA98159.1| chr1 32865973 32870253 +
1 domain prediction
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Lj1g3v3329660.1
n.a. RAB11G [Lotus japonicus] gi|1370154|emb|CAA98183.1| chr1 37765738 37767573 -
1 domain prediction
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Lj1g3v3329670.1
n.a. n.a. chr1 37765826 37767625 -
1 domain prediction
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Lj1g3v3331690.3
n.a. rac-type small GTP-binding protein [Cicer arietinum] gi|4586584|dbj|BAA76424.1| chr1 38205204 38207310 +
1 domain prediction
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Lj1g3v4554710.1
n.a. small GTP-binding protein [Pisum sativum] gi|871510|emb|CAA90080.1| chr1 53911379 53917452 +
1 domain prediction
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Lj1g3v4554720.1
n.a. RAB8B [Lotus japonicus] gi|1370192|emb|CAA98173.1| chr1 53912451 53917405 +
1 domain prediction
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Lj1g3v4668120.2
n.a. n.a. chr1 55386565 55389795 -
1 domain prediction
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Lj1g3v4668130.1
n.a. RAB1X [Lotus japonicus] gi|1370172|emb|CAA98163.1| chr1 55386583 55389733 -
1 domain prediction
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Lj1g3v5048260.1
n.a. RAB11B [Lotus japonicus] gi|1370144|emb|CAA98178.1| chr1 61716280 61718109 +
1 domain prediction
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Lj1g3v5048270.1
n.a. RAB11B [Lotus japonicus] gi|1370144|emb|CAA98178.1| chr1 61716381 61718248 +
1 domain prediction
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Lj2g3v0676890.1
n.a. PREDICTED: ras-related protein RABA6a-like [Glycine max] gi|356524680|ref|XP_003530956.1| chr2 10836300 10838774 +
1 domain prediction
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Lj2g3v0813080.1
n.a. PREDICTED: rac-like GTP-binding protein ARAC7-like [Cicer arietinum] gi|502163978|ref|XP_004513008.1| chr2 12736811 12741553 -
1 domain prediction
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Lj2g3v1670990.1
n.a. Rac-like GTP-binding protein [Medicago truncatula] gi|357483855|ref|XP_003612214.1| chr2 26036600 26039074 -
1 domain prediction
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Lj2g3v2507950.1
n.a. GTP binding protein [Medicago truncatula] gi|357460687|ref|XP_003600625.1| chr2 34869691 34875094 -
1 domain prediction
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Lj2g3v2661500.1
n.a. PREDICTED: ras-related protein Rab2BV-like [Glycine max] gi|356551598|ref|XP_003544161.1| chr2 35868950 35870869 -
1 domain prediction
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