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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0339600 |
| Transcript ID | LotjaGi3g1v0339600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter-related family protein; TAIR: AT3G13050.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7; TrEMBL-Plants: tr|A0A151SGI1|A0A151SGI1_CAJCA Putative transporter ZK637.1 family; Found in the gene: LotjaGi3g1v0339600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71397994..71404380) extracted from Lotus japonicus Gifu genome v1.2.
GAGGAAAGTGTCTCCCTGACACCTCGTCGTCAACGATATGAAGGTCGAAACTGAAATATAAAATCATAAATGAACGAGTT TGAAAATTCAACGCTCTATTCTATTTCCCCCAAACCGAACACACACAACACAACACAATCATATGTATTTTGATTACTCC GAAGAAAGATCCAACTTCTTGAACATACCTTTCTCTCTCTGTCTAGAAAACCAAAATGGTACCATTGAATGAAATCAAAT CACCTGATTTATCTTTCTACTCTATCTCGTCTTCGATTTGCAATCGAATCACCGCTCTCTTTTTCTACGATCTGATTCTT TATCTCATTTTGTGAATATAGACGGGGGTTGAAGGCCCAAGCTACACTGTAGATGATGCTCTTCTGGCTTTGGGTTTTGG GAATTTCCAGATACTCGTGCTTGGTTATGCTGGCATTGGTTGGATTTCAGAAGCAATGGAGATGATGATGCTCTCTTTTG TTGGGCCTGCAGTGCAAACAGCATGGGGTCTTTCCTCTCATGAAGAGAGCTTCATAACCAGTGTGGTTTTTGGTGGCATG TTGATTGGGGCATACTCTTGGGGCATTGTTTCTGATAAACATGGAAGGAGGTAGGTTTCTCTTTTTCATCTGCTTTACTA TCTTTTGCATTTTTAGTGGCCTGCCTATCAAATTTAGAACTAGCTATGTCCTGTTTGAAATCTTCTAATCAAGTTTGTCG AGATCCCACATTGACTAGAGATAGATAAGGTCAGAGTAGAGCTTACAAAGAATTATAACTAAATTCAAGAGATTTGTATG TTTGGATACCTGTTGAGTGCAACATGACTGAATTTTCGTCTCATTCCATAAGTAGAGTTTAGTTACCTTTTTGTCTCGAA GTGAGTGCTCGGTGCAAACGAGTATTCTAACATAGTAGCTTATATTATCATGTTTAGTTCAAAATATAGTAAAGTGGTCC TAAGCATGCTATTTTAGGGATGGTGCCAGGCTATGATGAGAATCTGTTGTGTTGTAGCACCAAAAACTTAAAAAAGAAAA AACATAACATCACACGCAAATTGTCAAAATCAGCAACTAATTAACCAAAAAGAATGTGTAGATCTCAATTTATCATAATT CTTATTGTGCTTCATTTATATTGCATTTCTACTTTGTTTCAGGTAAGTGCCATTTTTTTTTCTTGAAATAGTTGAATGTA AAATATTCCCTTTTAAGAGAGAAAAAACTACAGCTAGGTGGGGGTTAGGATATTCTTCAAGACAAAGAAATTGAATGGGT GACTAAAATTAGTCTTGTTTCAATTTCAGTACTTAATTTTCAAGTACAGATATCATAATGAACTCATTCAATATTATCTG CATGTTTTTTCTTTGACTTACTTCAATAATTCAGGAAAGGATTCCTTATCACAGCAACAGTTACTGCTATAGCTGGATTT CTGAGTGCATTTGCTCCTAACTATATATTATTAATTGTCCTTCGTTCAGTGGTTGGTATTGGTTTGGGAGGTGGCCCTGT ATTATCTTCTTGGTTTCTTGAGTTTGTTCCTGCCCCCAATAGAGGTACCTGGATGGTTGTCTTTTCAGGATTTTGGACTG TTGGTACAATTTTTGAGGCATCACTTGCATGGGTAAATTTTGTTCATTTCCTTTCAAGTTTTAGTTTCTCACCAATTACA ATGTCAATTGTGTTATAACAATTTGATGTCTTGCTATATGTATCAGCCCTTTCCCTCTTTTGTTCCAATGGTTTTAGAAG ATGATGAGGCTGTATTTTTTTGTTCCCCCCAAACAGGGAAAACAGGCAGTCACCTATGTTTATGTTTCTTTCCTTGGTTT CAGTTGTCCATGAAATTGGATAATCAGTTTCACCCTCAAATGGTCCATGGATCGAGACACAAATATCAAATTCTTTTATT TGATATTAAATGATTCAGATCTCAGCTGTTTTGTCATTAAACTCCTATATATAACTTCAACTTCGTTTCTTTATCATCAG AGCTCTGAAATTTTAAATTTGCTTCAATCCTACTTTTTAAAATTTTGAATTTACCCAAGATTCATTCAAGAACTAAGCAA CCAACAAGTAGTTACCTTAGGACTTATCACTTAAGTAATTCATTCATTTCAAAAAAATAAAACTTAGGTAATGCATAGGG TGTCAAAAATTGCCATTATTCTTTCTATAACTTAAATACAAACCCCAAAAACTTGTGTACTTTCATCATTTAGCGCAGGA AAGCATTAATGCTTTACCTGTCATTATTAAGGAATTATCTTAAGTTGTACTAATCTAGCAAATGTTCTGTCAAATTTATT AAGTCAGATACGATAGTGGTAGTTTCTAACTTTCTATTCCCATTGCATGACTAACAGATCATTGAGCTGATGGGTTCACC TAATGAAATGCTCTTTGCAGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCTCTATCTTCGCTTCCCACATCT TTCCTCCTTCTATTCTACAAAATGACGCCTGAGTCACCGAGATACCTGTGCTTGAAAGGTAGAACAGCTGATGCAATCAA TATTTTGGAGAAAATAGCAAGAGTAAATGGAAGAAAACTTCCTTCTGGTACCCTTGTTTCTGACCATCAAATTGAGCTAC ACGAAATCGATAGCTCCTCAGAGGACATAGGTTTACTCTCGCCAAGAAAAAGTGAAGCTGAATCTCCTAAAGGAATTGTT TCCAACTTAGGCGGCATCTCATCACTGAAGATGCTTCTCTCACCAAATTTGGCGAGGTCAACCCTTCTATTATGGGCAGT GTTTTTTGGTAATGCTTTTTCATATTATGGCCTTGTTTTGTTGACGTCTGAGTTGAATGGACATAGTAAATGCGTGCCAC ATGAATTGCAGACAGAGAGTTCCCAGGATATTAGGTACAAAGATGTTTTCATTGCTAGCTTTGCAGGTATGTTTTCTACT GATTCCAAAGTATTTGTTAGACAAATGCAGGGAAGTACATCATGCATGACTGAAACTTAACTAATTTCTTGCAGAGGTAC CTGGGCTCCTCTTGTCAGCTGCAGCAGTAGATAAACTTGGTCGTAAGCTTTCAATGTCAAGCATGTTCTTCATGTGTTGT ATTTTCCTGCTCCCATTAGTATTCTATCTTCCTGAAGGCCTTACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCAC GGCGACCTTCACAATTGTGTACATTTATGCACCAGAGGTAATGTATTTATTGCAAAATAATTTTGAATGATCTTGTTGAA ACCAAGAGTGTTTGATATAAATGGTACAAACTAATGACACCTATTTATACTGTTGAATACATTAGTACTATTGTAATACA ACTTGTATAATTTCATTCCAATAAGAGTATTAAAATACTGAGGCTCCTAAATCAATAAAAAGAATGCTATTATTTTTAGA TTCTTGCTAATGAGTGATATAAGGGTATTAAGGGATGAAGAAATAAATAGTATTGTTTAAAAGTGCAACATTTTCCAATT CTTAATTCCTTAGGACCTTAACCAATATCCACATTCATTAGCATTTGTCTTATTTTAATACTACCCCTTAATCTGAACCT AAGCTCTCTGCTTGTTACTAATGAGCACTCTTAAAAAACAGTAAATTATGCATAGACTCCTCCTCCTAAAGATTTGTCAA GATGAAAGCAAACTCCATACTTGGCTATAAATAACACCCTACCTCATTCTCTTTTTTCTTAGTTAACTTCAAGTTAAAGA AAAGAAAATGTAAAAGACAAAGCCTTATTAATTATTAGTGAGCTTTATAATACAAGAAAAGTATTTCATGATTGTTGGTG TTACCAGACAACTAGTGCATTTTTCCAGCTGTATAAAACTTAGATGAGTGCAGGTGTGATAAATATTCCTTTGTTACAGA AATATGTCTGCCACCAATTTAAATTAACTGTATAAAGTACAATATTTATTCTCATAAAAGATAAATCCTTGATGTGGTTT GATACTTGAAAGAGGGTGTAAGAAAATGATACTGATAGGTACCAGCAGTGAATGAGCAGAAAATTTGTTATTATTCAGGA GTAGCAATGAACTGCAATTACTGGTTGTTGGAGAGAACCAGCACTCTCCCTAAAATTCCCTTATAGCAAACCAGATACCA TCTTATATCTCTCTCCCTCTTATTTATAGACTATAGTATTTCCTTACTATCTCTAACTAACTCAATCACTGGCTAATTGT TACACTGACAGTTAACTGATGCTAACAGACTCATAAAGTGTTATCAAATAGCGGCTGTAGCGGCTGCGACCCGCTAAAGC GTAGCGGATTTTAGGGCCACCGCAATCGCTACGCCGCGACATAGCGGCCAGCGCGAGAAACGCAATCGCGGCAGCGACGG CCGTAGCGGCACTGGAAGCTGAAGCGGAAATAGCGGATTTTGAGGAATACTGCACGTTTTTTAATTTTTTAGGGTTTTTA AATATGGCAATTCTTGACTATTGGGCCACCGACTGCCTAATTAACTCCCCATTAATTCTTTTTTTCTATATTTATTATTT ATGCTTCATCATTAAGAAGAATCACGGCAGAATTGAAAAGGTTTCCAAAATCCTAATTCTCCTTCTCTCATCCTCCTTCT ACAAGCCCAATTAACTCCCCATTAATTCGTTTTTGTTGGATTTCCTTTTTCTGTTTCACTGTTTTAAGACTTGTGTTTGG TTATGTTGTTTTTAGTCTTTTGACATTTGTTTTGAGCTGGTGGCTGCCTTTAATAATTAACATTTGGTTGTTAAAAATGA TGATTTTTTTGCAGTTTTTATTGTTATGTGATAAGCTGTTGTTTCTTATGCAGTTTTTATTTGTTCATTTCAAATGTTTC TGCTCTAGTATTGCAATGGATGTCTGATAAGCTGCTGTTTTTTTATAATATTTTACTTATTTTAACCGCTATGTGGTTTC CGCTATTTTCCCGCGACGCTATCCGCTATATGAAATAGCGGATTTTGGCCTCGCCGCAATAGTCCGCGTTCGCGATTTGA CAACACTTCATTCCTTTAACTAACTAACTATTCTACTAACTAATTATAACAACTACTGTCTAGTTAGTTACAATAACCAC CTCTCCAATTTGGGGGTTTTAGAGGGAAGGGGAGGGGGAGAGAGAGAGCGTAAGCCCTCCCCTTAATTGGAAGTTTAAAA TTCCACAAAACCCCCCAATTTGAGGGAACTTCACAAAATGACTAAATGAGGTCTAGGAGAGGGGTCTTGGGAGGGATTTC AAAAATTCCCCAAACCCGTCCCCTCTTTTAAAGTTCTGTCAAACAAGGGGAGGCCTTCTCATAAGCCTCCTCTTTCACTT CCCTCCCTCCAAAATCTAACTTGCAAACAAAGCCTTAAGAGGCCTAATTTTTATCAGATACATATAGCTGAAGATGGTTT CACAATTTTATTTTAGCCTAGTCCTTCTTTATACATGACTGAATTTTAATATTTTGAAATGAATATGAACTGCAGATGTA CCCAACATCAGTCAGAACAACTGGTGTGGGAATCGCAAGCTCGGTGGGAAGGATTGGTGGAATGTTATGTCCTTTGGTAG CAGTTGGTTTAGTACATAGCTGTCATCAAACTGCAGCTGTTCTTCTATTTGAATTTGTAGCTCTAGTTTCAGGAATATGT GTTATGCTCTTTCCGGTTGAGACCATGGGCCAAGAACTACGAGATAGTGTATCAAGCTGAAAGAGACCGGCAACACATGA ACATAATGTGGTCTGATAAAACTTTAAAATCATGAAAACATATATAGATACACTAATGAGAAATCCTGCCAACATACTCT CTAACACACTATTTCTAACATACTTTCTCTTGATTGAAAATTATGTAGGTCCCACCAAAATCCATGGATCCACACTCTTA ATTTGGTGGGACTCACATGAACCTAATCAATGAAAGAGTGTTTAAAAGAGTGTGTTACTAGTATTTCTTAGTCGACTTAT CACACGGTTCTCAGAGGAAAAAGAGGAGAAAGGAGGAGTCATTTGGGGAAGAAGTAATTCAAGGGGACATTTTTTTTTTT TGCTTATTCCATTATATACCACTTCAATTATTCCCTTGCTCACATTTGATCCTTTTTTATGTGTAAATTGTGAAGTGAAT CATGGTCAATGATCAACATTTTGTGTGGATGCCTATTATTCTTCTGGAAATTACAATTCTTAAATTCTTTCAACAATTCT TCTAATTATTAAATGAATAAAGTATTACGTGTTTCTTTTATGTTACTGAAATATGAGGCATATTTTTTTTGTTTGCCATA AGATAATTATTAAAAAGGATATACCAATAATCCTAAGAAAAAAGTATGGAGGAATTTAGCATTCACG
CDS sequence (LotjaGi3g1v0339600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGGGGTTGAAGGCCCAAGCTACACTGTAGATGATGCTCTTCTGGCTTTGGGTTTTGGGAATTTCCAGATACTCGT GCTTGGTTATGCTGGCATTGGTTGGATTTCAGAAGCAATGGAGATGATGATGCTCTCTTTTGTTGGGCCTGCAGTGCAAA CAGCATGGGGTCTTTCCTCTCATGAAGAGAGCTTCATAACCAGTGTGGTTTTTGGTGGCATGTTGATTGGGGCATACTCT TGGGGCATTGTTTCTGATAAACATGGAAGGAGGAAAGGATTCCTTATCACAGCAACAGTTACTGCTATAGCTGGATTTCT GAGTGCATTTGCTCCTAACTATATATTATTAATTGTCCTTCGTTCAGTGGTTGGTATTGGTTTGGGAGGTGGCCCTGTAT TATCTTCTTGGTTTCTTGAGTTTGTTCCTGCCCCCAATAGAGGTACCTGGATGGTTGTCTTTTCAGGATTTTGGACTGTT GGTACAATTTTTGAGGCATCACTTGCATGGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCTCTATCTTCGCT TCCCACATCTTTCCTCCTTCTATTCTACAAAATGACGCCTGAGTCACCGAGATACCTGTGCTTGAAAGGTAGAACAGCTG ATGCAATCAATATTTTGGAGAAAATAGCAAGAGTAAATGGAAGAAAACTTCCTTCTGGTACCCTTGTTTCTGACCATCAA ATTGAGCTACACGAAATCGATAGCTCCTCAGAGGACATAGGTTTACTCTCGCCAAGAAAAAGTGAAGCTGAATCTCCTAA AGGAATTGTTTCCAACTTAGGCGGCATCTCATCACTGAAGATGCTTCTCTCACCAAATTTGGCGAGGTCAACCCTTCTAT TATGGGCAGTGTTTTTTGGTAATGCTTTTTCATATTATGGCCTTGTTTTGTTGACGTCTGAGTTGAATGGACATAGTAAA TGCGTGCCACATGAATTGCAGACAGAGAGTTCCCAGGATATTAGGTACAAAGATGTTTTCATTGCTAGCTTTGCAGAGGT ACCTGGGCTCCTCTTGTCAGCTGCAGCAGTAGATAAACTTGGTCGTAAGCTTTCAATGTCAAGCATGTTCTTCATGTGTT GTATTTTCCTGCTCCCATTAGTATTCTATCTTCCTGAAGGCCTTACAACGGGCCTTTTATTTGGAGCTCGCATATGCATC ACGGCGACCTTCACAATTGTGTACATTTATGCACCAGAGATGTACCCAACATCAGTCAGAACAACTGGTGTGGGAATCGC AAGCTCGGTGGGAAGGATTGGTGGAATGTTATGTCCTTTGGTAGCAGTTGGTTTAGTACATAGCTGTCATCAAACTGCAG CTGTTCTTCTATTTGAATTTGTAGCTCTAGTTTCAGGAATATGTGTTATGCTCTTTCCGGTTGAGACCATGGGCCAAGAA CTACGAGATAGTGTATCAAGCTGA
Protein sequence (LotjaGi3g1v0339600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGVEGPSYTVDDALLALGFGNFQILVLGYAGIGWISEAMEMMMLSFVGPAVQTAWGLSSHEESFITSVVFGGMLIGAYS WGIVSDKHGRRKGFLITATVTAIAGFLSAFAPNYILLIVLRSVVGIGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTV GTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMTPESPRYLCLKGRTADAINILEKIARVNGRKLPSGTLVSDHQ IELHEIDSSSEDIGLLSPRKSEAESPKGIVSNLGGISSLKMLLSPNLARSTLLLWAVFFGNAFSYYGLVLLTSELNGHSK CVPHELQTESSQDIRYKDVFIASFAEVPGLLLSAAAVDKLGRKLSMSSMFFMCCIFLLPLVFYLPEGLTTGLLFGARICI TATFTIVYIYAPEMYPTSVRTTGVGIASSVGRIGGMLCPLVAVGLVHSCHQTAAVLLFEFVALVSGICVMLFPVETMGQE LRDSVSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 7 | 486 | 480 | 9.5E-211 | – | |
| PANTHER | 7 | 486 | 480 | 9.5E-211 | – | |
| Phobius | 14 | 35 | 22 | - | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| SUPERFAMILY | 17 | 482 | 466 | 2.35E-61 | ||
| Gene3D | 21 | 484 | 464 | 8.0E-80 | – | |
| ProSiteProfiles | 27 | 477 | 451 | 35.878 | ||
| CDD | 30 | 472 | 443 | 3.36799E-138 | – | |
| Phobius | 36 | 41 | 6 | - | – | |
| Phobius | 42 | 59 | 18 | - | – | |
| Pfam | 59 | 226 | 168 | 6.5E-31 | ||
| Phobius | 60 | 64 | 5 | - | – | |
| TMHMM | 64 | 83 | 20 | - | – | |
| Phobius | 65 | 82 | 18 | - | – | |
| Phobius | 83 | 93 | 11 | - | – | |
| TMHMM | 93 | 110 | 18 | - | – | |
| Phobius | 94 | 112 | 19 | - | – | |
| Phobius | 113 | 117 | 5 | - | – | |
| TMHMM | 117 | 139 | 23 | - | – | |
| Phobius | 118 | 139 | 22 | - | – | |
| Phobius | 140 | 150 | 11 | - | – | |
| TMHMM | 149 | 171 | 23 | - | – | |
| Phobius | 151 | 172 | 22 | - | – | |
| Phobius | 173 | 177 | 5 | - | – | |
| TMHMM | 176 | 195 | 20 | - | – | |
| Phobius | 178 | 196 | 19 | - | – | |
| Phobius | 197 | 286 | 90 | - | – | |
| Phobius | 287 | 308 | 22 | - | – | |
| TMHMM | 291 | 313 | 23 | - | – | |
| Phobius | 309 | 338 | 30 | - | – | |
| Phobius | 339 | 357 | 19 | - | – | |
| Pfam | 351 | 481 | 131 | 2.2E-9 | ||
| ProSitePatterns | 353 | 368 | 16 | - | ||
| Phobius | 358 | 368 | 11 | - | – | |
| TMHMM | 364 | 383 | 20 | - | – | |
| Phobius | 369 | 385 | 17 | - | – | |
| Phobius | 386 | 390 | 5 | - | – | |
| TMHMM | 388 | 410 | 23 | - | – | |
| Phobius | 391 | 411 | 21 | - | – | |
| Phobius | 412 | 422 | 11 | - | – | |
| Phobius | 423 | 446 | 24 | - | – | |
| TMHMM | 423 | 445 | 23 | - | – | |
| Phobius | 447 | 451 | 5 | - | – | |
| Phobius | 452 | 472 | 21 | - | – | |
| TMHMM | 455 | 474 | 20 | - | – | |
| Phobius | 473 | 487 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0339600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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