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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0339600 |
| Transcript ID | LotjaGi3g1v0339600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transporter-related family protein; TAIR: AT3G13050.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7; TrEMBL-Plants: tr|A0A151SGI1|A0A151SGI1_CAJCA Putative transporter ZK637.1 family; Found in the gene: LotjaGi3g1v0339600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71398092..71404187) extracted from Lotus japonicus Gifu genome v1.2.
TTCTATTTCCCCCAAACCGAACACACACAACACAACACAATCATATGTATTTTGATTACTCCGAAGAAAGATCCAACTTC TTGAACATACCTTTCTCTCTCTGTCTAGAAAACCAAAATGGTACCATTGAATGAAATCAAATCACCTGATTTATCTTTCT ACTCTATCTCGTCTTCGATTTGCAATCGAATCACCGCTCTCTTTTTCTACGATCTGATTCTTTATCTCATTTTGTGAATA TAGACGGGGGTTGAAGGCCCAAGCTACACTGTAGATGATGCTCTTCTGGCTTTGGGTTTTGGGAATTTCCAGATACTCGT GCTTGGTTATGCTGGCATTGGTTGGATTTCAGAAGCAATGGAGATGATGATGCTCTCTTTTGTTGGGCCTGCAGTGCAAA CAGCATGGGGTCTTTCCTCTCATGAAGAGAGCTTCATAACCAGTGTGGTTTTTGGTGGCATGTTGATTGGGGCATACTCT TGGGGCATTGTTTCTGATAAACATGGAAGGAGGTAGGTTTCTCTTTTTCATCTGCTTTACTATCTTTTGCATTTTTAGTG GCCTGCCTATCAAATTTAGAACTAGCTATGTCCTGTTTGAAATCTTCTAATCAAGTTTGTCGAGATCCCACATTGACTAG AGATAGATAAGGTCAGAGTAGAGCTTACAAAGAATTATAACTAAATTCAAGAGATTTGTATGTTTGGATACCTGTTGAGT GCAACATGACTGAATTTTCGTCTCATTCCATAAGTAGAGTTTAGTTACCTTTTTGTCTCGAAGTGAGTGCTCGGTGCAAA CGAGTATTCTAACATAGTAGCTTATATTATCATGTTTAGTTCAAAATATAGTAAAGTGGTCCTAAGCATGCTATTTTAGG GATGGTGCCAGGCTATGATGAGAATCTGTTGTGTTGTAGCACCAAAAACTTAAAAAAGAAAAAACATAACATCACACGCA AATTGTCAAAATCAGCAACTAATTAACCAAAAAGAATGTGTAGATCTCAATTTATCATAATTCTTATTGTGCTTCATTTA TATTGCATTTCTACTTTGTTTCAGGTAAGTGCCATTTTTTTTTCTTGAAATAGTTGAATGTAAAATATTCCCTTTTAAGA GAGAAAAAACTACAGCTAGGTGGGGGTTAGGATATTCTTCAAGACAAAGAAATTGAATGGGTGACTAAAATTAGTCTTGT TTCAATTTCAGTACTTAATTTTCAAGTACAGATATCATAATGAACTCATTCAATATTATCTGCATGTTTTTTCTTTGACT TACTTCAATAATTCAGGAAAGGATTCCTTATCACAGCAACAGTTACTGCTATAGCTGGATTTCTGAGTGCATTTGCTCCT AACTATATATTATTAATTGTCCTTCGTTCAGTGGTTGGTATTGGTTTGGGAGGTGGCCCTGTATTATCTTCTTGGTTTCT TGAGTTTGTTCCTGCCCCCAATAGAGGTACCTGGATGGTTGTCTTTTCAGGATTTTGGACTGTTGGTACAATTTTTGAGG CATCACTTGCATGGGTAAATTTTGTTCATTTCCTTTCAAGTTTTAGTTTCTCACCAATTACAATGTCAATTGTGTTATAA CAATTTGATGTCTTGCTATATGTATCAGCCCTTTCCCTCTTTTGTTCCAATGGTTTTAGAAGATGATGAGGCTGTATTTT TTTGTTCCCCCCAAACAGGGAAAACAGGCAGTCACCTATGTTTATGTTTCTTTCCTTGGTTTCAGTTGTCCATGAAATTG GATAATCAGTTTCACCCTCAAATGGTCCATGGATCGAGACACAAATATCAAATTCTTTTATTTGATATTAAATGATTCAG ATCTCAGCTGTTTTGTCATTAAACTCCTATATATAACTTCAACTTCGTTTCTTTATCATCAGAGCTCTGAAATTTTAAAT TTGCTTCAATCCTACTTTTTAAAATTTTGAATTTACCCAAGATTCATTCAAGAACTAAGCAACCAACAAGTAGTTACCTT AGGACTTATCACTTAAGTAATTCATTCATTTCAAAAAAATAAAACTTAGGTAATGCATAGGGTGTCAAAAATTGCCATTA TTCTTTCTATAACTTAAATACAAACCCCAAAAACTTGTGTACTTTCATCATTTAGCGCAGGAAAGCATTAATGCTTTACC TGTCATTATTAAGGAATTATCTTAAGTTGTACTAATCTAGCAAATGTTCTGTCAAATTTATTAAGTCAGATACGATAGTG GTAGTTTCTAACTTTCTATTCCCATTGCATGACTAACAGATCATTGAGCTGATGGGTTCACCTAATGAAATGCTCTTTGC AGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCTCTATCTTCGCTTCCCACATCTTTCCTCCTTCTATTCTAC AAAATGACGCCTGAGTCACCGAGATACCTGTGCTTGAAAGGTAGAACAGCTGATGCAATCAATATTTTGGAGAAAATAGC AAGAGTAAATGGAAGAAAACTTCCTTCTGGTACCCTTGTTTCTGACCATCAAATTGAGCTACACGAAATCGATAGCTCCT CAGAGGACATAGGTTTACTCTCGCCAAGAAAAAGTGAAGCTGAATCTCCTAAAGGAATTGTTTCCAACTTAGGCGGCATC TCATCACTGAAGATGCTTCTCTCACCAAATTTGGCGAGGTCAACCCTTCTATTATGGGCAGTGTTTTTTGGTAATGCTTT TTCATATTATGGCCTTGTTTTGTTGACGTCTGAGTTGAATGGACATAGTAAATGCGTGCCACATGAATTGCAGACAGAGA GTTCCCAGGATATTAGGTACAAAGATGTTTTCATTGCTAGCTTTGCAGGTATGTTTTCTACTGATTCCAAAGTATTTGTT AGACAAATGCAGGGAAGTACATCATGCATGACTGAAACTTAACTAATTTCTTGCAGAGGTACCTGGGCTCCTCTTGTCAG CTGCAGCAGTAGATAAACTTGGTCGTAAGCTTTCAATGTCAAGCATGTTCTTCATGTGTTGTATTTTCCTGCTCCCATTA GTATTCTATCTTCCTGAAGGCCTTACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACGGCGACCTTCACAATTGT GTACATTTATGCACCAGAGGTAATGTATTTATTGCAAAATAATTTTGAATGATCTTGTTGAAACCAAGAGTGTTTGATAT AAATGGTACAAACTAATGACACCTATTTATACTGTTGAATACATTAGTACTATTGTAATACAACTTGTATAATTTCATTC CAATAAGAGTATTAAAATACTGAGGCTCCTAAATCAATAAAAAGAATGCTATTATTTTTAGATTCTTGCTAATGAGTGAT ATAAGGGTATTAAGGGATGAAGAAATAAATAGTATTGTTTAAAAGTGCAACATTTTCCAATTCTTAATTCCTTAGGACCT TAACCAATATCCACATTCATTAGCATTTGTCTTATTTTAATACTACCCCTTAATCTGAACCTAAGCTCTCTGCTTGTTAC TAATGAGCACTCTTAAAAAACAGTAAATTATGCATAGACTCCTCCTCCTAAAGATTTGTCAAGATGAAAGCAAACTCCAT ACTTGGCTATAAATAACACCCTACCTCATTCTCTTTTTTCTTAGTTAACTTCAAGTTAAAGAAAAGAAAATGTAAAAGAC AAAGCCTTATTAATTATTAGTGAGCTTTATAATACAAGAAAAGTATTTCATGATTGTTGGTGTTACCAGACAACTAGTGC ATTTTTCCAGCTGTATAAAACTTAGATGAGTGCAGGTGTGATAAATATTCCTTTGTTACAGAAATATGTCTGCCACCAAT TTAAATTAACTGTATAAAGTACAATATTTATTCTCATAAAAGATAAATCCTTGATGTGGTTTGATACTTGAAAGAGGGTG TAAGAAAATGATACTGATAGGTACCAGCAGTGAATGAGCAGAAAATTTGTTATTATTCAGGAGTAGCAATGAACTGCAAT TACTGGTTGTTGGAGAGAACCAGCACTCTCCCTAAAATTCCCTTATAGCAAACCAGATACCATCTTATATCTCTCTCCCT CTTATTTATAGACTATAGTATTTCCTTACTATCTCTAACTAACTCAATCACTGGCTAATTGTTACACTGACAGTTAACTG ATGCTAACAGACTCATAAAGTGTTATCAAATAGCGGCTGTAGCGGCTGCGACCCGCTAAAGCGTAGCGGATTTTAGGGCC ACCGCAATCGCTACGCCGCGACATAGCGGCCAGCGCGAGAAACGCAATCGCGGCAGCGACGGCCGTAGCGGCACTGGAAG CTGAAGCGGAAATAGCGGATTTTGAGGAATACTGCACGTTTTTTAATTTTTTAGGGTTTTTAAATATGGCAATTCTTGAC TATTGGGCCACCGACTGCCTAATTAACTCCCCATTAATTCTTTTTTTCTATATTTATTATTTATGCTTCATCATTAAGAA GAATCACGGCAGAATTGAAAAGGTTTCCAAAATCCTAATTCTCCTTCTCTCATCCTCCTTCTACAAGCCCAATTAACTCC CCATTAATTCGTTTTTGTTGGATTTCCTTTTTCTGTTTCACTGTTTTAAGACTTGTGTTTGGTTATGTTGTTTTTAGTCT TTTGACATTTGTTTTGAGCTGGTGGCTGCCTTTAATAATTAACATTTGGTTGTTAAAAATGATGATTTTTTTGCAGTTTT TATTGTTATGTGATAAGCTGTTGTTTCTTATGCAGTTTTTATTTGTTCATTTCAAATGTTTCTGCTCTAGTATTGCAATG GATGTCTGATAAGCTGCTGTTTTTTTATAATATTTTACTTATTTTAACCGCTATGTGGTTTCCGCTATTTTCCCGCGACG CTATCCGCTATATGAAATAGCGGATTTTGGCCTCGCCGCAATAGTCCGCGTTCGCGATTTGACAACACTTCATTCCTTTA ACTAACTAACTATTCTACTAACTAATTATAACAACTACTGTCTAGTTAGTTACAATAACCACCTCTCCAATTTGGGGGTT TTAGAGGGAAGGGGAGGGGGAGAGAGAGAGCGTAAGCCCTCCCCTTAATTGGAAGTTTAAAATTCCACAAAACCCCCCAA TTTGAGGGAACTTCACAAAATGACTAAATGAGGTCTAGGAGAGGGGTCTTGGGAGGGATTTCAAAAATTCCCCAAACCCG TCCCCTCTTTTAAAGTTCTGTCAAACAAGGGGAGGCCTTCTCATAAGCCTCCTCTTTCACTTCCCTCCCTCCAAAATCTA ACTTGCAAACAAAGCCTTAAGAGGCCTAATTTTTATCAGATACATATAGCTGAAGATGGTTTCACAATTTTATTTTAGCC TAGTCCTTCTTTATACATGACTGAATTTTAATATTTTGAAATGAATATGAACTGCAGATGTACCCAACATCAGTCAGAAC AACTGGTGTGGGAATCGCAAGCTCGGTGGGAAGGATTGGTGGAATGTTATGTCCTTTGGTAGCAGTTGGTTTAGTACATA GCTGTCATCAAACTGCAGCTGTTCTTCTATTTGAATTTGTAGCTCTAGTTTCAGGAATATGTGTTATGCTCTTTCCGGTT GAGACCATGGGCCAAGAACTACGAGATAGTGTATCAAGCTGAAAGAGACCGGCAACACATGAACATAATGTGGTCTGATA AAACTTTAAAATCATGAAAACATATATAGATACACTAATGAGAAATCCTGCCAACATACTCTCTAACACACTATTTCTAA CATACTTTCTCTTGATTGAAAATTATGTAGGTCCCACCAAAATCCATGGATCCACACTCTTAATTTGGTGGGACTCACAT GAACCTAATCAATGAAAGAGTGTTTAAAAGAGTGTGTTACTAGTATTTCTTAGTCGACTTATCACACGGTTCTCAGAGGA AAAAGAGGAGAAAGGAGGAGTCATTTGGGGAAGAAGTAATTCAAGGGGACATTTTTTTTTTTTGCTTATTCCATTATATA CCACTTCAATTATTCCCTTGCTCACATTTGATCCTTTTTTATGTGTAAATTGTGAAGTGAATCATGGTCAATGATCAACA TTTTGTGTGGATGCCT
CDS sequence (LotjaGi3g1v0339600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAGTGGTTGGTATTGGTTTGGGAGGTGGCCCTGTATTATCTTCTTGGTTTCTTGAGTTTGTTCCTGCCCCCAA TAGAGGTACCTGGATGGTTGTCTTTTCAGGATTTTGGACTGTTGGTACAATTTTTGAGGCATCACTTGCATGGATTGTGA TGCCAAGACTGGGTTGGAGATGGCTTCTTGCTCTATCTTCGCTTCCCACATCTTTCCTCCTTCTATTCTACAAAATGACG CCTGAGTCACCGAGATACCTGTGCTTGAAAGGTAGAACAGCTGATGCAATCAATATTTTGGAGAAAATAGCAAGAGTAAA TGGAAGAAAACTTCCTTCTGGTACCCTTGTTTCTGACCATCAAATTGAGCTACACGAAATCGATAGCTCCTCAGAGGACA TAGGTTTACTCTCGCCAAGAAAAAGTGAAGCTGAATCTCCTAAAGGAATTGTTTCCAACTTAGGCGGCATCTCATCACTG AAGATGCTTCTCTCACCAAATTTGGCGAGGTCAACCCTTCTATTATGGGCAGTGTTTTTTGGTAATGCTTTTTCATATTA TGGCCTTGTTTTGTTGACGTCTGAGTTGAATGGACATAGTAAATGCGTGCCACATGAATTGCAGACAGAGAGTTCCCAGG ATATTAGGTACAAAGATGTTTTCATTGCTAGCTTTGCAGAGGTACCTGGGCTCCTCTTGTCAGCTGCAGCAGTAGATAAA CTTGGTCGTAAGCTTTCAATGTCAAGCATGTTCTTCATGTGTTGTATTTTCCTGCTCCCATTAGTATTCTATCTTCCTGA AGGCCTTACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACGGCGACCTTCACAATTGTGTACATTTATGCACCAG AGATGTACCCAACATCAGTCAGAACAACTGGTGTGGGAATCGCAAGCTCGGTGGGAAGGATTGGTGGAATGTTATGTCCT TTGGTAGCAGTTGGTTTAGTACATAGCTGTCATCAAACTGCAGCTGTTCTTCTATTTGAATTTGTAGCTCTAGTTTCAGG AATATGTGTTATGCTCTTTCCGGTTGAGACCATGGGCCAAGAACTACGAGATAGTGTATCAAGCTGA
Protein sequence (LotjaGi3g1v0339600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGVVGIGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMT PESPRYLCLKGRTADAINILEKIARVNGRKLPSGTLVSDHQIELHEIDSSSEDIGLLSPRKSEAESPKGIVSNLGGISSL KMLLSPNLARSTLLLWAVFFGNAFSYYGLVLLTSELNGHSKCVPHELQTESSQDIRYKDVFIASFAEVPGLLLSAAAVDK LGRKLSMSSMFFMCCIFLLPLVFYLPEGLTTGLLFGARICITATFTIVYIYAPEMYPTSVRTTGVGIASSVGRIGGMLCP LVAVGLVHSCHQTAAVLLFEFVALVSGICVMLFPVETMGQELRDSVSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| ProSiteProfiles | 1 | 358 | 358 | 19.97 | ||
| Gene3D | 2 | 366 | 365 | 1.3E-57 | – | |
| PANTHER | 4 | 367 | 364 | 9.8E-152 | – | |
| PANTHER | 4 | 367 | 364 | 9.8E-152 | – | |
| TMHMM | 4 | 23 | 20 | - | – | |
| Pfam | 4 | 107 | 104 | 5.4E-16 | ||
| SUPERFAMILY | 5 | 363 | 359 | 4.19E-39 | ||
| CDD | 17 | 353 | 337 | 4.90901E-87 | – | |
| TMHMM | 30 | 52 | 23 | - | – | |
| Phobius | 31 | 53 | 23 | - | – | |
| Phobius | 54 | 58 | 5 | - | – | |
| TMHMM | 57 | 76 | 20 | - | – | |
| Phobius | 59 | 77 | 19 | - | – | |
| Phobius | 78 | 167 | 90 | - | – | |
| Phobius | 168 | 189 | 22 | - | – | |
| TMHMM | 172 | 194 | 23 | - | – | |
| Phobius | 190 | 219 | 30 | - | – | |
| Phobius | 220 | 238 | 19 | - | – | |
| TMHMM | 220 | 238 | 19 | - | – | |
| Pfam | 232 | 362 | 131 | 1.2E-9 | ||
| ProSitePatterns | 234 | 249 | 16 | - | ||
| Phobius | 239 | 249 | 11 | - | – | |
| TMHMM | 245 | 264 | 20 | - | – | |
| Phobius | 250 | 266 | 17 | - | – | |
| Phobius | 267 | 271 | 5 | - | – | |
| TMHMM | 269 | 291 | 23 | - | – | |
| Phobius | 272 | 292 | 21 | - | – | |
| Phobius | 293 | 303 | 11 | - | – | |
| Phobius | 304 | 327 | 24 | - | – | |
| TMHMM | 304 | 326 | 23 | - | – | |
| Phobius | 328 | 332 | 5 | - | – | |
| Phobius | 333 | 353 | 21 | - | – | |
| TMHMM | 336 | 355 | 20 | - | – | |
| Phobius | 354 | 368 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0339600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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