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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0342200 |
| Transcript ID | LotjaGi3g1v0342200.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sterol delta-7 reductase; TAIR: AT1G50430.2 Ergosterol biosynthesis ERG4/ERG24 family; Swiss-Prot: sp|Q9LDU6|ST7R_ARATH 7-dehydrocholesterol reductase; TrEMBL-Plants: tr|A0A072UFJ5|A0A072UFJ5_MEDTR 7-dehydrocholesterol reductase-like protein; Found in the gene: LotjaGi3g1v0342200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71743794..71747472) extracted from Lotus japonicus Gifu genome v1.2.
GTATGTATTTTTCAGGTTTGGGATATTCAACCCTACAATTGTTTATGATCATTTGGGAGAGATATTTTCAGCCTTGATCT TTGGGAGCTTGGTCTTTTGTGTTCTCTTATACATAAAAGTGAGACAGTGAAATAGGAGAAGTAAATTGTTTCCTATGATT TACATTCAAAACTTCTAACTAGAGTGTTATGTTTGCTAGGGTCATTTGGCACCATCTTCCACGGATTCTGGTTCCTCGGG GAACATAATCATTGATTTTTACTGGGTAAACTAATCTCTTCTTTTTACTTTGACTAAACAGTTTCAAAAAAAAGTTACGT GTTTATATACATTAAATGTTGAAAAAGATTGAAGAAAGAGAAAGTGAACGAGGAAATAATGTATAAATAAAAGTGAGGGG CAGCATGATAATTCTCCCAGTCTCCCCAGTCTGATACTTGTTGCTGTCATGCCTCTAGAGGACTGTTGATGCAATGAACC GTTCTTCAAAATTACTGCCTCTCTTATTCTAGACCAAGAAGGCATAGACAATGCATATAAAATTCTTTTAGAAAGTATCA ATACTTTGTCCGTCTGGTCTCATTAAAGTTGCATCCATGATGCCAGTGTGCTTTGAAATTTTTCTTCTAGAAATGTTTCC ATGTTTTATGATTATTATTACCATTTTCACCATATATGAAGAAAATGCTTGAGAAATTAAAATTTTATCTGTTGGGACTT GTTTTTATAAGAACAATAACAGCCCAGGGTATGTGGCAAATGAGACCTAACTTATAGCCATTCTTGCAGGGTATGGAGCT CTATCCACGCATTGGAAAATATTTTGACATAAAAGTTTTCACAAACTGTAGATTTGGAATGATGTCATGGGCTGTTCTTG CACTAACCTATTGCATAAAGCAGGTTTAGTCTCTGTTTATATTCTTTGTATTAGTATTGAAGTCATTTAATATCAGATAA TGTCTTCTTGTATCAGATCAAGCTAATGATTGTAGTGTCCAACATTTAGTTGCCTTACACAGTTAGCTATCCTTTGATTA CCTATTTGTAGTTTCTGATACTTCCTTGTAGAAACAGCACAAGCCTGGGGGCCTTGGTGGTTAGGTGACCCTGTAACAGA AGCTCGGGATCATCTACTTTTGTATTGTATTGTCTTCTAAACTGTAATAAGATTTCATCTATGATTTTGGATATGAATCA CGTTTATCTTTATGTGGGTTGACTTCCTTAGTTGCCTTGGATATAATGACTGTATGATGCTGACTTATCAACCTCCATAA ATAAGATGTGATGATGGGTCCAGTACCAGATAAATCTGGAATGTGTTATTTTTTGAATACTACTGTTGTATGATATATCC ACCCTATGGTTAATTCTCTAATGAATGTGCTCTTGTCTTAATAGTATGAAGAAAATGGGAAAGTAGCTGACTCGATGCTT GTAAATACTACATTAATGCTGGTGTATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAACACAATGGATATTGC ACATGATCGAGGTATACACGTGCTTTATTATTGTTTCTGTGACACACTTACTCTTTCCCATTGTTCTATCGAAGTATGAG TGGTTGTTAGGAAGACTAGTATTTTTTATCTTCAAGAAAAGAATGATCTCCAGTTTTCATGGATATAGACTATATCTTCC ATTCCATGATATATATGATTGCTAAATTCTTTGCACACATCGTATTTAAACTTCTTTATCGTCTCACTAAATCTTAAAAC ACCTAAATCTGGCAGCTGGATTTTATATTTGCTGGGGCTGTTTGGTGTGGGTTCCATCTGTGTACACTTCTCCTGGAATG TACCTTGTCAACCATCCTGTAAATCTTGGCACCCAGGTACAATCCCCATCCTGTTTGTGTTGCTGGTTTGTTATAGTTAT ACAGTGAGTGGGGAACAGAATGAAAAGATAGGGTTGAGTTGTTGAAGTGGTGTTGCCAGCAGATTTTTCCTTACTTTTAA TATATATTATAATCTTTCCCCAATTTTACTGAAAGTTGTCTTTCTTTCTTGTCTTCCAGCTTGCTCTTTTTATCTTAGTG GCTGGCATTCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTCGGACAAATGGAAAATGCTT GGTCTGGGGAAAAGCTCCATCAAAGGTCTAAATTCATAGAATTTACTTATTTCATTTTCATTTGGAATGTATGAGATTGG AATACTTACATGAATATTTTCCAGTAGACTTACACAAGGTAACCATGATGAAAATGCACTTGCAGATAGAGGCCTCATAT ACTACTAGTTCTGGGCAAACAAAAAGAAGCCTTCTTTTAACCTCTGGATGGTAAGTTTTCACTTATAATTCTGTAAACAC AAATGTGTGGCAACTATTGGGGGAGAATGGTTATTACTGGAGAACTGAGACCATACATGCCTCCCGTGATTGACGAGTTT AAGCTCACCATTTGTTGGGGCTGGTTCCGGACATTTGATTTGAAGTATATTATGATTCCATTAAGTTGATGTTAATAGTT TATATCTAGGTGTGAATGTTATTTTTAACCATAGGTGGCTTTTAAACTCAAAAGAGGCCTTGGATTTTGATATCTAATGT GACTAGAAGAAAACGCTTTCTGTCTTAGAAAATAACGGTTCACGTTTTTTTGAGTACCTGTAGGTGGGGATTATCTCGTC ATTTTCATTATGTCCCTGAAATACTAGCTGCTTTCTTCTGGACAGTGCCAGCTCTTTTCAATCATGTAAGGGTGTCTCTT TCTCTGAACAACAGTACAAGTTGAAAATTTGAGACAATATTAAGCTTAGCTTCTTTTTTCTGGTGCAGTTTTTACCTTAC TTCTATGTGATATTTCTTACCATCCTTCTTTTTGATCGAGCAAAAAGGGATGACGATCGATGCAGATCCAAGTAAGCATT CTGTTATATCTTTTAATTGGTTTGCTTTGTGAGTTTTGACTTGTTAGTCGGATACAGTCTCCCATTTTTCTTATCAATAA GAAATGAACAATATACCACCAATCAACCAGGATTGGGCTGTTTCTGAAGTATACAAATCATTAGTGTAAACTGTAAAGCA ATAGAATTTTAGAACATCTCAATTTCGCATGGCATTGTTAATAAAAGACGCATAAATTAAAGAACGTTTCTGTTCATGTT GGTACCAAAAGGAATATTGAGTGCAGAACAGTTATAAAGAATATAAAGTATGGTTTCTTGAAACCACTAATTTATTTATC ATGGAGTCGAATTAACATTTTGTTACCAAAGGTTTAGAAATTTTTTGGTTCTGGTTTGAAGTAGATAGAGTATGAGAGAA GAAAGATTTTTGAAACTCAGATTTTCGTTACTGATGGGTAGTGTGCAAGTAATATTTATCCAATGTGAGAGTATGGGTTA TAGCTGAGTGACCTCCGCTTCTCTGTTACAACTGTCTGACCAATGCTAACAGATTCAGTTCTAATTATATCAGCTATCTA TAGATACAGGTGTTAAATAGAAACCAAAACTACTGCATTCTATTATGGTCAGCAACCGTGGACATGGAGTTGAAAATTTT CTTTGTTTGCAGGTATGGCAAGTACTGGAAACTGTATTGCGACAAGGTTCCTTACAGAATCATTCCGGGAATATACTGA
CDS sequence (LotjaGi3g1v0342200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTCTATCCACGCATTGGAAAATATTTTGACATAAAAGTTTTCACAAACTGTAGATTTGGAATGATGTCATGGGC TGTTCTTGCACTAACCTATTGCATAAAGCAGTATGAAGAAAATGGGAAAGTAGCTGACTCGATGCTTGTAAATACTACAT TAATGCTGGTGTATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTGGAACACAATGGATATTGCACATGATCGAGCT GGATTTTATATTTGCTGGGGCTGTTTGGTGTGGGTTCCATCTGTGTACACTTCTCCTGGAATGTACCTTGTCAACCATCC TGTAAATCTTGGCACCCAGCTTGCTCTTTTTATCTTAGTGGCTGGCATTCTTTGCATATACATCAACTATGATTGTGACA GGCAAAGGCAAGAATTTCGTCGGACAAATGGAAAATGCTTGGTCTGGGGAAAAGCTCCATCAAAGATAGAGGCCTCATAT ACTACTAGTTCTGGGCAAACAAAAAGAAGCCTTCTTTTAACCTCTGGATGGTGGGGATTATCTCGTCATTTTCATTATGT CCCTGAAATACTAGCTGCTTTCTTCTGGACAGTGCCAGCTCTTTTCAATCATGTAAGGTTTTTACCTTACTTCTATGTGA TATTTCTTACCATCCTTCTTTTTGATCGAGCAAAAAGGGATGACGATCGATGCAGATCCAAGTATGGCAAGTACTGGAAA CTGTATTGCGACAAGGTTCCTTACAGAATCATTCCGGGAATATACTGA
Protein sequence (LotjaGi3g1v0342200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELYPRIGKYFDIKVFTNCRFGMMSWAVLALTYCIKQYEENGKVADSMLVNTTLMLVYVTKFFWWEAGYWNTMDIAHDRA GFYICWGCLVWVPSVYTSPGMYLVNHPVNLGTQLALFILVAGILCIYINYDCDRQRQEFRRTNGKCLVWGKAPSKIEASY TTSSGQTKRSLLLTSGWWGLSRHFHYVPEILAAFFWTVPALFNHVRFLPYFYVIFLTILLFDRAKRDDDRCRSKYGKYWK LYCDKVPYRIIPGIY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 255 | 255 | 2.3E-159 | – | |
| PANTHER | 1 | 255 | 255 | 2.3E-159 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Pfam | 2 | 255 | 254 | 2.1E-62 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 21 | 38 | 18 | - | – | |
| Phobius | 39 | 49 | 11 | - | – | |
| Gene3D | 46 | 254 | 209 | 2.4E-5 | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| Phobius | 50 | 70 | 21 | - | – | |
| Phobius | 71 | 81 | 11 | - | – | |
| TMHMM | 82 | 104 | 23 | - | – | |
| Phobius | 82 | 104 | 23 | - | – | |
| Phobius | 105 | 109 | 5 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 110 | 130 | 21 | - | – | |
| Phobius | 131 | 183 | 53 | - | – | |
| TMHMM | 178 | 200 | 23 | - | – | |
| Phobius | 184 | 201 | 18 | - | – | |
| Phobius | 202 | 206 | 5 | - | – | |
| TMHMM | 204 | 221 | 18 | - | – | |
| Phobius | 207 | 224 | 18 | - | – | |
| ProSitePatterns | 219 | 242 | 24 | - | ||
| Phobius | 225 | 255 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Sterol biosynthetic process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces NAD or NADP. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0342200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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