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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0350800 |
Transcript ID | LotjaGi3g1v0350800.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7; TrEMBL-Plants: tr|I3SSR5|I3SSR5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0350800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72954204..72956963) extracted from Lotus japonicus Gifu genome v1.2.
CAACCCACCACTTATTTTCTGTCGAAATATCTTCCTGATCCTGTCTCATCTCTGTTCTCCCCATTTCACAACCCACAATA AAAACAACCAAACAAAAAAAAAACAACGAAAAAATAAACCCTAGAACGGGAGAGAGATTTCATATCCCCACAAATCTCTT CCTTCTCTCTCCTCCATTTCCTCTCCCTCTCTCTCTCTGTCCGTCCCCAACTTCCAACCTTTCTTCAATTCCGATTCCAG CTACCTCCTCCGTGCCCTCAATTTCTCCGATCAAGGTCAGAATCCATTTCAATTTCATCTTCACAACTTGTATTTTTCAT TCCCAATTTTTCCCCAATTTTTTCCCAATTTCTGAAATTGTGATTGAAATTGCACAGATCTGGTGGTGTATATGGTTTTG ATACCCAATCGCATTTCCAAGGAATGCAGCAAGATTCACCGAAAGCCGAATCGATCCAGATTCGCGAGGTGTGGAACGAA AATCTGGAGCAAGAGTTCGCCTTGATCCGTGAAATCGTCGATGACTACCCTTACATCGCCATGGACACCGAGTTCCCCGG AATCGTTCTCCGCCCGGTGGGGAATTTCAAGAACAGCCATGATTACCATTACCAAACCCTAAAGGACAACGTCGACATGC TCAAGCTTATCCAACTCGGCTTAACGTTCTCCGACGAGGAGGGTAACCTCCCCTCCTGCGACGGCTCCTCCTGCATCTGG CAGTTCAACTTTCGCGAGTTCAATGTCAATGAGGACGTCTTCGCGAATGACTCGATCGAGCTATTGCGGCAGAGTGGGAT TGATTTCAGCAAGAATAACGAGATGGGCATCGACGCCCGACGATTCGGGGAGCTTTTGATGTCGTCGGGGATTGTGTTGA ATGATAATATCCACTGGGTTACGTTTCATAGTGGGTATGATTTTGGGTATTTGTTGAAGTTATTGACTTGTCAGGACCTG CCTGATACTCAGGTAGGGTTCTTTAACATGATCAACATGTACTTCCCTACATTGTATGACATCAAGCATCTCATGAAGTT TTGCAACAGTCTTCATGGTGGGTTGAACAAGCTTGCAGAGTTGTTGGAGGTGGAGAGGGTTGGGATTAGTCATCAGGCTG GTTCTGATAGCTTGCTCACTTCTTGTACATTCAGGAAATTGAAAGAGAATTTCTTTAGTGGCTCTTTGGAAAAATATGCT GGTATCTTGTATGGATTAGGTTGTGAGAATGGACATGGTTCTCATTGACTGAGAGAGACAAAAAAACAAAATAAAAAAAA TGAAATTAGAGAAAAAAAAATTGTTGAAAAAAAAAAGTGGTAGATCTCTATTTATTTGAGCTGCTGTATACCTGGTGAAT ACCAACTTGTTCTGTGTAATTGTAAACTTTTGGCATATTTAAGTGTCTTGGTTTATCAATACTCTTTGTTACATTGTGCC TAACTCATCTTCTGTTCCTATTTGGCATGACAGTACTTTATAACATGTATCAGCTTATTTCTCTGCAGAATCAATTTTGG CATCTGAAGCTACTTACATAAGCTTCTTATATCAGAATTGATTTTGGCTTGAGAGTGCATCTCATGGTTGTCCTAGTGGT TTGCATACATTGCTGGCTTCTCCTATGGGTTGTAGCGATTTGCTGATGCTCGATAGTATGAGAGTGTCTTTTGCCAGAGT AGTTTTAGTTTAGTTCTTGTTTTTATTTGGGCTTAGGCCTCCTTTTAACCATAGCAAAAAGAATTGATTTTGGTTTTCTG ATCAATTGTAGAAGAATTTCTGCGCATGCACTTAGTGGAATCATGCACAGATTCTTAAATCATTCAAAATGGTTCTGATC TGAATTTTACTGTACAGATTTTAATTTGAGGGTGGGTTCTTTAACATGATCAACATGTATTTCCCCTACCGTGTATGGCA TCAAGCATCTCATGAAGTTTTGCTACAGCCTTCGTGGAAGGTTGAACAAGCTTGCAGAGTTGTTAGAGGTGGAGAGGGTT GGAATTAGTCATCAGACTGAAGCTGATAGTTTGCTCACTTCATGTCCTATTTGGCATGAGAGGACTTCATAACATGTTTG GAGCAATTTATTTCTCTTGCTGGCATAAGAAGCTACTTGTGGAAGTTTCTTCTTAGAATTATTTTGCATAAAGAATCAAT TGTAAATATTTTCACACATGCACCTAGTAGAATCATACACAGATCTTAAATCATTCATCAGAATTTTCCTGTGAAGATAT TATTTCTAGGGCGAGTTTGGTCGGGGAAGGTTTGATTGTTTAGAGGCAGTAGTATATTAGTTTTTGATCAATTTTTTGTC ACTACCTTGCAAATGTTAACCATTTCTTCAGTTTTTCATTGTCGCTGAGCTGATATATTCAAAGATGTTGACTGTTCAGT GTATTTTGTTTATGTTCAATGAAATATAATATATGCTGACATTACATTGGTGTAGATCAAAACAAGATGGCAACTGATGG CTAAGTATTTTGGATTGCATTATTTTTTCTGCTTGCAGTTTCTCCACTTGTATGTTGCAACGGCATGTATTTACTCAGAA AAGCCATTGCTACATAGCTCTACAGCTTTAGTCCACGATTTATTCGTCTTGTCATTGGATTTATATATTTCATAAAGCAT ATTTGTCATTGTGGTTTTGTGTGTTAATCTTTTGTGAAAAGAGCATATTTGTATTGATTTTAACTTAGTATCTGCCCAGA AGGGGCATCTTGATGTTTTCTTTCTTTGTGTGTTAATCTG
CDS sequence (LotjaGi3g1v0350800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCAAGATTCACCGAAAGCCGAATCGATCCAGATTCGCGAGGTGTGGAACGAAAATCTGGAGCAAGAGTTCGCCTT GATCCGTGAAATCGTCGATGACTACCCTTACATCGCCATGGACACCGAGTTCCCCGGAATCGTTCTCCGCCCGGTGGGGA ATTTCAAGAACAGCCATGATTACCATTACCAAACCCTAAAGGACAACGTCGACATGCTCAAGCTTATCCAACTCGGCTTA ACGTTCTCCGACGAGGAGGGTAACCTCCCCTCCTGCGACGGCTCCTCCTGCATCTGGCAGTTCAACTTTCGCGAGTTCAA TGTCAATGAGGACGTCTTCGCGAATGACTCGATCGAGCTATTGCGGCAGAGTGGGATTGATTTCAGCAAGAATAACGAGA TGGGCATCGACGCCCGACGATTCGGGGAGCTTTTGATGTCGTCGGGGATTGTGTTGAATGATAATATCCACTGGGTTACG TTTCATAGTGGGTATGATTTTGGGTATTTGTTGAAGTTATTGACTTGTCAGGACCTGCCTGATACTCAGGTAGGGTTCTT TAACATGATCAACATGTACTTCCCTACATTGTATGACATCAAGCATCTCATGAAGTTTTGCAACAGTCTTCATGGTGGGT TGAACAAGCTTGCAGAGTTGTTGGAGGTGGAGAGGGTTGGGATTAGTCATCAGGCTGGTTCTGATAGCTTGCTCACTTCT TGTACATTCAGGAAATTGAAAGAGAATTTCTTTAGTGGCTCTTTGGAAAAATATGCTGGTATCTTGTATGGATTAGGTTG TGAGAATGGACATGGTTCTCATTGA
Protein sequence (LotjaGi3g1v0350800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQDSPKAESIQIREVWNENLEQEFALIREIVDDYPYIAMDTEFPGIVLRPVGNFKNSHDYHYQTLKDNVDMLKLIQLGL TFSDEEGNLPSCDGSSCIWQFNFREFNVNEDVFANDSIELLRQSGIDFSKNNEMGIDARRFGELLMSSGIVLNDNIHWVT FHSGYDFGYLLKLLTCQDLPDTQVGFFNMINMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVGISHQAGSDSLLTS CTFRKLKENFFSGSLEKYAGILYGLGCENGHGSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 269 | 269 | 7.8E-117 | ||
PANTHER | 3 | 268 | 266 | 8.5E-171 | – | |
PANTHER | 3 | 268 | 266 | 8.5E-171 | ||
SUPERFAMILY | 13 | 265 | 253 | 5.96E-92 | ||
Pfam | 16 | 136 | 121 | 2.3E-10 | ||
Pfam | 159 | 243 | 85 | 1.8E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | Poly(A)-specific ribonuclease activity | Catalysis of the exonucleolytic cleavage of poly(A) to 5'-AMP. | ||
Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi3g1v0350800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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