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IPR039637 is a CCR4-NOT transcription complex subunit 7/8/Pop2.
<p>This entry includes subunits CNOT7 and CNOT8 of the CCR4-NOT complex required for RNA degradation. Both CNO7 and CNOT8 are 3'-5' poly(A) exoribonucleases removing the poly-A tail and have somewhat redundant activities [[cite:PUB00089894]]. This entry also includes CNOT7/8 yeast homologue, Pop2, which is a nuclease subunit of the yeast Ccr4-Not complex [[cite:PUB00082302], [cite:PUB00019241]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Poly(A)-specific ribonuclease activity | Catalysis of the exonucleolytic cleavage of poly(A) to 5'-AMP. | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7; TrEMBL-Plants: tr|I3SY01|I3SY01_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0378700 | 10 | ||
| – | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7; TrEMBL-Plants: tr|I3SY01|I3SY01_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0378700 | 10 | ||
| – | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7; TrEMBL-Plants: tr|I3SY01|I3SY01_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0378700 | 10 | ||
| – | CCR4-NOT transcription complex family protein; TAIR: AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9; TrEMBL-Plants: tr|T2DP39|T2DP39_PHAVU CCR4-associated factor 1-like protein 11; Found in the gene: LotjaGi1g1v0576600_LC | 5 | ||
| – | CCR4-NOT transcription complex family protein; TAIR: AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9; TrEMBL-Plants: tr|T2DP39|T2DP39_PHAVU CCR4-associated factor 1-like protein 11; Found in the gene: LotjaGi1g1v0576600_LC | 5 | ||
| – | CCR4-NOT transcription complex family protein; TAIR: AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9; TrEMBL-Plants: tr|T2DP39|T2DP39_PHAVU CCR4-associated factor 1-like protein 11; Found in the gene: LotjaGi1g1v0576600_LC | 5 | ||
| – | CCR4-NOT transcription complex family protein; TAIR: AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9FMS6|CAF1K_ARATH Probable CCR4-associated factor 1 homolog 11; TrEMBL-Plants: tr|I1NAS4|I1NAS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0735100 | 10 | ||
| – | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9; TrEMBL-Plants: tr|I1LTY5|I1LTY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0181000 | 8 | ||
| – | CCR4-NOT transcription complex family protein; TAIR: AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7; TrEMBL-Plants: tr|I3SSR5|I3SSR5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0350800 | 9 | ||
| – | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7; TrEMBL-Plants: tr|I3SSR5|I3SSR5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0350800 | 9 | ||
| – | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7; TrEMBL-Plants: tr|I3SSR5|I3SSR5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0350800 | 9 | ||
| – | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7; TrEMBL-Plants: tr|I3SSR5|I3SSR5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0350800 | 9 | ||
| – | CCR4-NOT transcription complex family protein; TAIR: AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9; TrEMBL-Plants: tr|I1LRJ8|I1LRJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0473600 | 9 | ||
| – | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9FMS6|CAF1K_ARATH Probable CCR4-associated factor 1 homolog 11; TrEMBL-Plants: tr|A0A067JTU3|A0A067JTU3_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0486800_LC | 7 | ||
| – | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9; TrEMBL-Plants: tr|A0A0L9U8M9|A0A0L9U8M9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0101300 | 9 | ||
| – | CCR4-NOT transcription complex family protein; TAIR: AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9; TrEMBL-Plants: tr|I1NAS4|I1NAS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0313900_LC | 15 | ||
| – | CCR4-NOT transcription complex family protein; TAIR: AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9; TrEMBL-Plants: tr|I1NAS4|I1NAS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0313900_LC | 15 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| TRANSMEMBRANE | Phobius | 1 | 5.88 |