Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0356900 |
| Transcript ID | LotjaGi3g1v0356900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF4050 family protein; TAIR: AT5G25360.3 hypothetical protein; Swiss-Prot: sp|Q02400|LE193_HORVU Late embryogenesis abundant protein B19.3; TrEMBL-Plants: tr|I3T388|I3T388_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0356900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73875132..73880880) extracted from Lotus japonicus Gifu genome v1.2.
AAAATAATCCAGTCTTGCTTATATTATTCTGTTTTGGCCTTTTCATTTGGGAGAGAAGAAAGAGGACGAAGAACAGGAAG AAGAAGAAGAAGAATCCAAAAGCAATCCCATCTGTGTGTTTGCACATCAGAAGGGAGAGCTATCGGTTTCAGAATCCAAA CCTCACAGCGACATTCTCTCAAACACAAAAGGTTCCTCATGCATTTTCTCTTTTCCTTTTACAATTTTCAATTTCATCAT CATTTTGATAATTTTCAACCTTTTTTTCTGTTTGAATTTTTAGGATTGCTCTTGAATCGGGCTTTGTCGTCTTCATCTCT CTGCAAATTCGTTTTGGCAGATCTAATCTCATAAAGATTTTTTGATTTTTCTGGGTGATTCAGTCACTGCATGCATATGG GGTATGTTTTCTGTATCCAACCAGAACCGAAGAAAGTTAACTCCTTTTTGTCTTTTTTCCTTTTATTAGCTTTTCTGTCA AAATGGGTCTCTGTGTTTTTCCCTATATTGATTGATAATCATGTGGTGGGGGTGATGACCCTGAAAACTGTTACCTTTTT TTTTCTCTTGATTTATTTTGTTGTCGAGACTCTAGATGAAAATGATTCATGATGGACTATAGATTCCAATGCCAGCATTT TCTGTTTTGGGAATAGAGAATGGCTAGCTGTGTATATGTTTTTAGTGTAAAATTGTCAATAAATTATGTCTGTTTTTTTT TAATTTTCTGGTTTAGAGGGACTAGATTGCCTTGTGTGGCAAATCTATTTGCAGCTATGAAATTCAAATGTTTGGATTGT GTTGGTTGCTGTGGATAATTTGTGATTATAATGTGGTGCATAACCGAAATTAACGTGATTGTAACAGAGCAGTGGTTGTG TTGGATGCTATAAAAGGCCCACACTAGTTACTACAGTGGATGAGCCAACACAAGGGTTGACAACACAAGGTGAGGCAGTG AAGAAACATAGTACATCAGAGGATTTCTGGACCACCAGCACGCATGATATGGACAACAGTGCGGTTCAGTCGCAGGGGAG TATATCTTCAGCCAGTGTAACGAACCAAGCTGTTGTTCCTCATGGTGTTTCTTCCAAAAGCAGCAACCCCACTGAATTTG TAAATCAAGGTATTCTTCATTGCTTTTATTGCACAGATATTTTACTAAATAGGCATTTCATTGTTTGAGATGGGATTTTA ACCCCACATTGTGAAATGAAAAAAAGAATGATATTGGCTTGCACAATGGTGGCTGAAAGCATCCATTGCCTATTGGTGGG TTGATCCACTCCTTCAACAAGTCTATTACCTAATAACATTGCGTGCGTATGGAGAGATATGGGGGGTGGCGTGGGGGTAG TTACACTTCAGGAATTCCTTTATAGGGAGGCATGCCAATTTTTGGCGTACTTATGATAAGATAGATATATTTGGTGTATT TAGCTTCTCATTTATGAAATGTGATTTGAATGATGTGCTGATTTATTCCATTAAGTGAAGTCAGCTATATGGATCACATG ATCCATATTAAAGATATGACCAGTTTTACATTGGCTGCTGCAGGCTTAACATGTGTTTTTAATGTCGCGCGTAGCAAAGA ATTCGGCTAACCCTTACTCGTTCACTTAACAAACACAATTCTCATTAAGCCTCCTCTTCAATCATTTGAGCCCCAAAAAC CTGAATCACTCCTTACTAAAGAAGCATTAAAAGAATTTTCTCAAATTCTCTAAGTTCGTAAGGCTTCTATTCGGCCAAAC ACAAACCAACTTTCACCAAATACCTATAATTCTCAAACACATTTTCTTCCACCTCAGTTTCATCCCCTAACGTGGTGATT TAATCTAGTTTATATTGAATTATCAAATAATATATTTTTTTGGTTTGACTAGCATTGTTCATATGTTTTTCTTATGCGCC ACACGCTCATTCCGGAAACCGTGCTAATTGCCACCTCTTTTCCTGTGGATTACTTTTTTATCACTCTCTTAATGTGTCTA GTCAGTTTTGCACTTTACTAACTTATTTATATTTTGTTGAAAGATCATTGGTTGCAAGTGCATTCATGAAAATATTTCCG GTTGCAGGTTTAAATCTCTGGAACCAGACTAGGCAACGTTGGGTTGGACCAAAAAAGCCTGAGACCCGAACACAACAGTT GCGAGAACCTAAATTAAGGTAAATAACTCTGTTGGATTAGTTTTAGTGGCAGCAGGTTCTTATTTTTGTAATTTTGTGAG TTAGGAATGGATTTCAGTGAATACATCTTTCTATAAGCTTTTATTACTTCTTTCCCCTGTCTGATTTTGCACCAACTTTA TACAAATTGATAGTGTTATACTGTTTTACATTTTTACGCTGATAGCTAAACAATTAGAAGCCAGTTGTAGCATCGAGAGG AGAAAAATGTGTAAATGATAGATATCCATATTCCATGGTGTGAAACCATCCTTAGCTCCTTGCTGCTACATGGATGTCTA CTGCCATATTCAAGGAAAGGAACTTAGCTTAGTTTTTAGTTGTTGGATTCTTGAATATTGGCATGCTAAGTTCCTTTAGG TTGGTATGGTGCATTGCAACTACTCGAGTTGCCGAATAAGATTTCCACATGTGGCTGATGAACTTTCCTTTTACTTTCAG TAATTATGAACTTGTGTTTTTTTTATCTTGCCAGAACTTATGGTCTGTGCCTTGCCAAATTTTGTTGGCTTTGCAGTTGG AATGCAACATATGAAAGTTTACTGGGGAGCAACAAGCCATTCCGTCAGCCGATTCCTCTCGCTGTAAGTATCTAATTCTG AACCACCATGCAGTTTAAGTAAACATTGATGATCTGACAGTTTGGTTCTATCGATTTTACTGATAGGAAATGGTAGACTT TCTTGTGGACATCTGGGAACAAGATGGCCTTTACGATTGAAGCTTGAGGAACTGTTTTTTGGTTTTGATCCCTGAAATAA TTCTAGTTCCTGTTTCTTTAGGAAGAGGATTGTGCACATTCTGCATTTTGTACATCAATTGTCACATGCCAATGAGTAAA ATTTCTCTCTGAAAGCCTTGAGAAAGATAATTGTATTATACTTTATTTAATTAATTGTCCTGGTTGCCCTGGTATCTGAA GAGGCAAGTTTTGAAAAACTCCTTTTGTTGACAGCATTCGGCATCAGTGGCTGGAACTTGCTCTGCATTTCCATAAAGTT AGACGCGAAATTACATCAGAAATGGTCATCAACACTTGACATATCATTTCTAATTTGGTTTCATATTCGTTAAACCTGAA AAAATAAAATTCTGAATGATTTTTGTCATTAATTTTTTTTAAAGGAAAATCAGCTATTTAACTTTGATAACATTCTAGTA TTATAGATTTTTTTTTTGGTCAAAAGTATTATAGATTTGTAATGCTACATCTGGAAAACTGGGTCACATTTTTCATCCCC ACCACCCATATTCATCAAGAACAATGCTCCATATTAAACCTTTTTTTTTGACAGGATGCTCCATATTAAACTTGACAGCA ACTTGTATAGGGATAAGCTATAGGCTCTTTTTGTGAGTAGGCCTAGTTTGTTTTAGCTTCTAATTTATGTGAGCATTTTA ATGAAATAAGTATTTAGCTGACTTACAAAAGACTTCTTTAGAAGTATATCTATACTGGCTCTTAGAAAACACTTGGTTAT TACAAGCTCTTTTCAATTTTCTTTTCCTATAATTACTTGTTCAGGATATTTCTTTCTTACTCCTAATGGTAGCTGGGAGC TTGGGACTTCAAATCTGTAAAATTCCTTTTAATGGGATTTCTGTAATATTAAAGTAGCATATATTTAACTTGATATATCA ATTTGGGCTTGGATCCAACACTAATTTTTGGAAACTCGTGACTCGACAAAAGAAATGATGCTGGTGTATTGTTCTTTTCC TCTGGAACACTCTTGTGAATGACAACATGTCACGTCTAAGAAAGAACCAGAACTATCCAATACTATCATTATTCTCAAGT TCTACATGTATCTAGAGCCACTTTGTGATGTGCCTCTCCGACATATCCTAGAAGTTCTTGGACACTTCTGTAAGCATCCA GAGCCAAGTGACCAACATCAACCCCATATCTTTATTTAAGTTGTGTCAGCAGTTCCTTTCATTATCAACGAACACAAACA AATTACACATAGACAAGCACTTCAACATCAAACTCAACAAATGGCTTTGGCACGTTTGGCTTTGAGAAATTTGCAGCAAA GGGTCTCTGCTTCTTCCTCTGCTCCCTTGATAAGGCATCATGGTAGTGTGGAGAAGCAGAGGTGGGGCAATGGGTTGGTG GCAAGGTTTTCCACTGCAGCGAGTGAGAAGGAGAAATCTGAAGGGAGTGAAGTTGCAGTCACGGAAGGTAAAAAGTCAAG GTTGTTCCCTAGGAGGAAGAGTAGGAGATGGCTTTGGAGAAATGATGACCGTGACTTCTCTCCTGCACTTCATGGTATGT ATATCATCACCTTCACTTTTATAATCTAGATATTGAAAATGAGGTGAAACTTCATTTCCACAACTAAAAGGAACCCTTCA ACATACAAATATTTCAAACGTTGAAAACCCAATTCTTGACAATTAGCATTTAATATAACTAGTACTCCAACATTGTCAAT ATTCAATGAACAAACAGGAGCATATGTTTGTTTGACATTGTTTTAGCGTTACAAATGATGCAAAGACAATTTATATGACC TAAATGAAATGAACACAAATATTTTCGTCAACGTTCATTCACGCATTTAAACAAACATGTCAGGTCGAAGGAATTTTCAA ATCTTAGAAAATGGCTAAACTCTAGTTGTTTGGTTTGAATAATTGAATCTAACTGGGGTCAATTTGGTGCGTACATTATT GAATTGATAGAATATATTCAGTAGAGTTAGGTACTATAATCATTGTTTAAAATTACACAAATTAGTCATTGAAAATTTAA ATTTTACATCAAGACAAAAAAAAACCTGTTATTTTGATGAAACACAGGCTTACATTGTATTTTATGTTTGGTTCTTAGAG TTGTTTCCATCAAGCCTTGGGAATGCACTAATGCAAGCAACTGAGAACATCAACAAGCTATTTGACAACATGAATTTGAC ACCATGGTCTCTCAGCGGGCGCGTGAAAGAGTGGGATGACCATTACAAACTTCGTTATGACATGCCAGGAATTGCCAAGG AGGATGTAAAGATCACCATTGATGATGGGATGTTGACAATTAAGGGGGAGCACAAGGAAGAGAAAGAAGAAGGGGATGAT GATGAGTATTGGTCTTCAAGTAGCTATGGCTACTATAATACCAGCTTGGTTTTGCCTGATGATGCCAAGGGTGATGAAAT TAAGGCAGAGTTGAAGGATGGTGTGCTAACTGTGACTATTCCTAGAACTGAGAAGCCCAAAAAGGATGTGAAACAAGTGA CTGTACAATAAATTTGGAATTTTATGAGTGTGTGGTAGTGATGTCGTGAAATATGAAGTTGTGAGCCTATGGCGTTAATA AGAAATAAAATTTCAGCCCTGTTCGTGGAAAATTTCAATTGGAATCATTCTATTATTGTTTGCCCTATTTTGGATTTAAT GACTTCTTTTTGGGCTTTGTTGTTGTATAGGGTGGTTTTTGCTCAGGCTGCAGTGAGAGTTGTTTTCTTTTGTCTGTTGG GCCTAGGTTGTTTTCTTTAGAAATGAAGGTTTTTTTTTTTTAAAGAAATGAAGGTTATAAAGATGAAGG
CDS sequence (LotjaGi3g1v0356900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATATGGGTGGTTGTGTTGGATGCTATAAAAGGCCCACACTAGTTACTACAGTGGATGAGCCAACACAAGGGTTGAC AACACAAGGTGAGGCAGTGAAGAAACATAGTACATCAGAGGATTTCTGGACCACCAGCACGCATGATATGGACAACAGTG CGGTTCAGTCGCAGGGGAGTATATCTTCAGCCAGTGTAACGAACCAAGCTGTTGTTCCTCATGGTGTTTCTTCCAAAAGC AGCAACCCCACTGAATTTGTAAATCAAGGTTTAAATCTCTGGAACCAGACTAGGCAACGTTGGGTTGGACCAAAAAAGCC TGAGACCCGAACACAACAGTTGCGAGAACCTAAATTAAGTTGGAATGCAACATATGAAAGTTTACTGGGGAGCAACAAGC CATTCCGTCAGCCGATTCCTCTCGCTGAAATGGTAGACTTTCTTGTGGACATCTGGGAACAAGATGGCCTTTACGATTGA
Protein sequence (LotjaGi3g1v0356900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHMGGCVGCYKRPTLVTTVDEPTQGLTTQGEAVKKHSTSEDFWTTSTHDMDNSAVQSQGSISSASVTNQAVVPHGVSSKS SNPTEFVNQGLNLWNQTRQRWVGPKKPETRTQQLREPKLSWNATYESLLGSNKPFRQPIPLAEMVDFLVDIWEQDGLYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 159 | 157 | 3.9E-87 | – | |
| PANTHER | 3 | 159 | 157 | 3.9E-87 | – | |
| Pfam | 46 | 117 | 72 | 1.6E-12 | ||
| MobiDBLite | 58 | 84 | 27 | - | – | |
| Pfam | 118 | 159 | 42 | 8.0E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0356900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…