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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0366900 |
| Transcript ID | LotjaGi3g1v0366900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rop guanine nucleotide exchange factor; TAIR: AT1G79860.1 RHO guanyl-nucleotide exchange factor 12; Swiss-Prot: sp|Q9CA89|ROGFC_ARATH Rop guanine nucleotide exchange factor 12; TrEMBL-Plants: tr|V7AQ39|V7AQ39_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0366900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75309541..75311636) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGGAGAGATTTGCTAAATTGCTATTGGGGGAGGATATGTCTGGTGGAGGAAAGGGTGTTTCATCAGCTCTGGCACT GTCAAATGCATTCACAAACCTTGCTGGTATGTTGACTTTTTAGCTTTTACTTTCTTTATATGCTACTTGAATCATGATGG ATACCCATTGTGATGTTACTTCCATTTTCATGAGCTCTGGATAGAAGAAATGTTTCAAATAGCTCTTGTAAGTTTTTCAT CGTTTTCTTGCTGAGAATGCAGCTGCTGTTTTTGGTGAACAAAAGCGCCTAGAGCCGATGCCGCCCGAGAGGAAAGCCAG ATGGAGAAAGGAAATTGATTGGCTTCTATCAGTGACAGATTATGTTGTTGAGATGGTTCCTACTCAACAAAAAGCAAAAG ATGGATCCAGCATGGAGGTAACCCTCCTCACTCACCCTACTTTTCCAATGTTCCTTATTCTCCCTATGACAGTTGCTATA CGATTGATCCTCATCTTTGAATAAATAGATTATGACAACGCGACAACGAACGGATCTCCACATGAATATCCCTGCCTTAA GAAAGCTTGACAACATGCTTATTGTAAGATCACTAACCAAAATGATCATTATTTTTCTATAGATAGGTCTCAATTGGTTG TTAGCTCTTAAAAAACTTGCTGATGATGAGCAGGATTGTCTAGATAACTTCAAAGACCAGAATGAGTTCTACTATGTATC AAAAGATGCAGATGATGCAGATAAAGATAGTTCAAAGAGAAAAAATGATGACAAGTGGTGGTTACCTACACCTAAGGTTC CTGCAGAGGGTTTATCTGATGTGGCGAGAAGGTTTCTGCAGTATCAAAAAGATTGTATGAATCAAGTACTTAAAGCAGCG ATGGCCATAAATGCACAGACCCTATCGGAGATGGAGATCCCTGAAAGCTATATTGAATCCCTACCCAAGGTAAGTAAAAC AGAACTAGTATCTGCATAGAAGTTTTCTTGATTAACAATTTCATATCTTTTCACATTATATAAATTTTGGTCTTTTTACT TCTTTTACAGAATGGAAGAGCCAGTCTAGGGGACTCGATCTACCGTAGCATTACAGATGACGTTTTTGATCCTGATCAGT TCCTAGCTACTATGGACATGACATCAGAACATAAAATCCTAGATCTCAAGAACAGAATCGAGGCGTCAATAGTGATTTGG AAGCGGAAGATGAACCAAAAAGATACCAAGTCAGCTTGGGGTTCTGCTGTGAGCTTGGAAAAAAGAGAACTCTTTGAAGA GAGAGCAGAAACCATCTTAATTCTTTTGAAGCACCGTTTTCCTGGGCTTCCCCAATCTTCATTGGATATAAGCAAAATCC AATTCAACCGGGTAAGAGCATCCCCTGCTAGTAGTTTGATTCTGCATGCTTCTCAGTTTCAATGTTGCATTAATTTTTTC CATGGATGATTGATATAAATATAATACAAAACCATTCATATGCTTTCACCTAACCGCTTAAGCTTTCAAGTTAGTTGGTT CATCACATGTTATCAGAGCCTTTATAACCAAGTATTCTAGAGCTTGATCCTGGCGTGTTGCCATATCTATTATAAGTTCT AGTCATAACAATAGACAAATATTAGTGTTTTGTTTCACTACCATATGTGCTTAAGGATCACTTATGATGGCAGGATGTGG GGCAAGCTGTTCTTGAAAGCTATTCAAGAATATTGGAAAGTTTGGCTTTTACAGTGCTGTCAAGAATAGAAGATGTACTC CATGCAGATCACCTCACTCAAAACCCATCACTAGCTGGAAGAAGGAGCAGTGTGAGAAACCAAGTTCCCAAGCCAGAGAA GTGTCCAACTCCTAGAGAAGAGGTGGACAAGGGTGGAGCAGAAACACCCGGGTCAATGACACTATCTGATTTCATGGGTT GGCATGGTGATCAAGGTGACTCAGACATTAAGAAGGACCCTCTTGCTGCAACAGATGACTTCTACAAAGACATTGATAGT GGAAAGCCTCAAAAACTCCCAAATGTAGTGACAGACAAGAAGGTTTCTTATCTTGAGACCTTGGGAGGTATGAGAAGTCC CACATCGCGTCATTAA
CDS sequence (LotjaGi3g1v0366900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGAGAGATTTGCTAAATTGCTATTGGGGGAGGATATGTCTGGTGGAGGAAAGGGTGTTTCATCAGCTCTGGCACT GTCAAATGCATTCACAAACCTTGCTGCTGCTGTTTTTGGTGAACAAAAGCGCCTAGAGCCGATGCCGCCCGAGAGGAAAG CCAGATGGAGAAAGGAAATTGATTGGCTTCTATCAGTGACAGATTATGTTGTTGAGATGGTTCCTACTCAACAAAAAGCA AAAGATGGATCCAGCATGGAGATTATGACAACGCGACAACGAACGGATCTCCACATGAATATCCCTGCCTTAAGAAAGCT TGACAACATGCTTATTGATTGTCTAGATAACTTCAAAGACCAGAATGAGTTCTACTATGTATCAAAAGATGCAGATGATG CAGATAAAGATAGTTCAAAGAGAAAAAATGATGACAAGTGGTGGTTACCTACACCTAAGGTTCCTGCAGAGGGTTTATCT GATGTGGCGAGAAGGTTTCTGCAGTATCAAAAAGATTGTATGAATCAAGTACTTAAAGCAGCGATGGCCATAAATGCACA GACCCTATCGGAGATGGAGATCCCTGAAAGCTATATTGAATCCCTACCCAAGAATGGAAGAGCCAGTCTAGGGGACTCGA TCTACCGTAGCATTACAGATGACGTTTTTGATCCTGATCAGTTCCTAGCTACTATGGACATGACATCAGAACATAAAATC CTAGATCTCAAGAACAGAATCGAGGCGTCAATAGTGATTTGGAAGCGGAAGATGAACCAAAAAGATACCAAGTCAGCTTG GGGTTCTGCTGTGAGCTTGGAAAAAAGAGAACTCTTTGAAGAGAGAGCAGAAACCATCTTAATTCTTTTGAAGCACCGTT TTCCTGGGCTTCCCCAATCTTCATTGGATATAAGCAAAATCCAATTCAACCGGGATGTGGGGCAAGCTGTTCTTGAAAGC TATTCAAGAATATTGGAAAGTTTGGCTTTTACAGTGCTGTCAAGAATAGAAGATGTACTCCATGCAGATCACCTCACTCA AAACCCATCACTAGCTGGAAGAAGGAGCAGTGTGAGAAACCAAGTTCCCAAGCCAGAGAAGTGTCCAACTCCTAGAGAAG AGGTGGACAAGGGTGGAGCAGAAACACCCGGGTCAATGACACTATCTGATTTCATGGGTTGGCATGGTGATCAAGGTGAC TCAGACATTAAGAAGGACCCTCTTGCTGCAACAGATGACTTCTACAAAGACATTGATAGTGGAAAGCCTCAAAAACTCCC AAATGTAGTGACAGACAAGAAGGTTTCTTATCTTGAGACCTTGGGAGGTATGAGAAGTCCCACATCGCGTCATTAA
Protein sequence (LotjaGi3g1v0366900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKERFAKLLLGEDMSGGGKGVSSALALSNAFTNLAAAVFGEQKRLEPMPPERKARWRKEIDWLLSVTDYVVEMVPTQQKA KDGSSMEIMTTRQRTDLHMNIPALRKLDNMLIDCLDNFKDQNEFYYVSKDADDADKDSSKRKNDDKWWLPTPKVPAEGLS DVARRFLQYQKDCMNQVLKAAMAINAQTLSEMEIPESYIESLPKNGRASLGDSIYRSITDDVFDPDQFLATMDMTSEHKI LDLKNRIEASIVIWKRKMNQKDTKSAWGSAVSLEKRELFEERAETILILLKHRFPGLPQSSLDISKIQFNRDVGQAVLES YSRILESLAFTVLSRIEDVLHADHLTQNPSLAGRRSSVRNQVPKPEKCPTPREEVDKGGAETPGSMTLSDFMGWHGDQGD SDIKKDPLAATDDFYKDIDSGKPQKLPNVVTDKKVSYLETLGGMRSPTSRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 236 | 236 | 8.0E-105 | – | |
| PANTHER | 1 | 451 | 451 | 9.3E-277 | – | |
| ProSiteProfiles | 1 | 353 | 353 | 114.582 | ||
| Pfam | 1 | 347 | 347 | 9.6E-174 | ||
| PANTHER | 1 | 451 | 451 | 9.3E-277 | ||
| Gene3D | 269 | 353 | 85 | 1.5E-19 | – | |
| MobiDBLite | 350 | 384 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi3g1v0366900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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