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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0376200 |
| Transcript ID | LotjaGi3g1v0376200.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein 4; TAIR: AT2G45720.1 ARM repeat superfamily protein; Swiss-Prot: sp|O22193|PUB4_ARATH U-box domain-containing protein 4; TrEMBL-Plants: tr|A0A0B2R036|A0A0B2R036_GLYSO U-box domain-containing protein 3; Found in the gene: LotjaGi3g1v0376200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76888320..76890050) extracted from Lotus japonicus Gifu genome v1.2.
TTCATCAGTTTAATTAAACTACTCCAAAAAAATTGTTGAATCATGGTGGAAGATTGTGGAGAAGCAGTAGCTGTAGACAC CCGTTCCACAGAAGAATGGTTGTTGCAGGCACAAGAGCTTGTTCCTGTTGCTCTTGCCAAGGCAAAAGAGGTTAAAGGGT TCACTGTTAGGTGGAAGATGATCATTTCAAAATTGGAACAAATCCCATCACGTTTATCAGACTTGTCTAGCCACCCCTGC TTCTCCAAGAACGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACCCTCAGAGAGGCCATTGAATTGGCTGAGTT CTGTGTGAAGGAGAAGTACGAGGGCAAGCTTCGTATGCAGAGTGATCTTGATGCATTAACAGGAAAGCTTGATTTGAATT TAAAGGATTGTGGATTGTTGATCAAAACCGGTGTGCTCGGTGAGGCTACTTTGCCATTGGCGTTAACCGTGAATGGTCCT ATAGCAGAATCAGATATTACAACACATAGCAACATAAGGGAACTACTTGCACGCCTTCAGATTGGTCATTTGGAAGCAAA GCACAAAGCTTTGGATAAACTCTATGATGCTATGAGAGAAGATGAGAAGAACGTTTTGGCTGTTCTAGGTAGGAGCAATG TTGCTGCTTTAGTTCAATTGCTCACAGCAACATCTCCAAGGATAAGGGAAAAAACAGTCACTGTTATATGCTCTCTTGTC GAATCAGGAAGCGGCGAAAACTGGCTAGTTTCTGAAGGAGTTCTTCCACCTCTCATAAGACTAGTTGAGTCTGGCAGTAC TGTTGGTAAAGAGAAGGCTGTAGTATCTCTCCAGAGGCTGTCAATGTCAGCGGATACAACCCGCGCAATCGTTGGACACG GCGGGGTTCCTCCGTTGATTGAGCTTTGTCAATCTGGTGAATCTGTGTCACAGGCTGCTGCTGCTTGTGCTTTGAAGAAT ATATCTTCTGTTCCTGAAGTGAGACAGGTTCTGGCTGAAGAAGGTGTTGTGAAGGTTATGATCAATCTCCTAAATTTTGG AATTTTGCTTGGTTCCAAAGAGTATGCTGCAGAGTGCTTGCAGAATCTCACTGCAAGCAATGAAAATCTGAGAAGGTCTG TGGTATCCGAAGGCGGTGTTCGGAGTCTCCTGGATTATCTTGATGGACCTCTTCCCCAAGAATGTGCTGTTGGAGCATTG AGGAACCTTGTTGGATCAGTTTCCGAGGAAGTTTTGGTTTCTCTCGGTTTGATTCCCCGTTTGGTTCATGTGCTCAAGTC TGGATCCTTAGGTGCTCAGCAAGCCGCTGTGTCTGTTATCTGCAGGATTTGCAGCTCAATGGAGATGAAGAAGATGGTTG GTGAAGCTGGATGCATCCCTCTTCTTGTGAAGGTGCTTGAAGCTAAAGCAAACGGTATTAGAGAGGTTTCTGCTCAAGCA ATTGCAAGCTTGATGGTTTTGTCCCAGAACCGGAGAGAAGTTAAGAAGGATGATAAAAGTGTGCCAAACCTGGTTCAGTT GCTTGATCCGAGTCCTCAAAACACTGCAAAAAAGTATGCGGTTTCTTGCCTTGGATCACTCTCCTCATGTAAGAAATGTA AGAAACTGATGGTTTCTTATGGAGCAATTGGGTATCTGAAGAAGCTTTCAGAGATGGAGATTCCAGGAGCTAAAAAGCTG CTTGAGCGGTTAGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAATAG
CDS sequence (LotjaGi3g1v0376200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGAAGATTGTGGAGAAGCAGTAGCTGTAGACACCCGTTCCACAGAAGAATGGTTGTTGCAGGCACAAGAGCTTGT TCCTGTTGCTCTTGCCAAGGCAAAAGAGGTTAAAGGGTTCACTGTTAGGTGGAAGATGATCATTTCAAAATTGGAACAAA TCCCATCACGTTTATCAGACTTGTCTAGCCACCCCTGCTTCTCCAAGAACGCTCTTTGCAAGGAGCAATTGCAGGCTGTG TCAAAGACCCTCAGAGAGGCCATTGAATTGGCTGAGTTCTGTGTGAAGGAGAAGTACGAGGGCAAGCTTCGTATGCAGAG TGATCTTGATGCATTAACAGGAAAGCTTGATTTGAATTTAAAGGATTGTGGATTGTTGATCAAAACCGGTGTGCTCGGTG AGGCTACTTTGCCATTGGCGTTAACCGTGAATGGTCCTATAGCAGAATCAGATATTACAACACATAGCAACATAAGGGAA CTACTTGCACGCCTTCAGATTGGTCATTTGGAAGCAAAGCACAAAGCTTTGGATAAACTCTATGATGCTATGAGAGAAGA TGAGAAGAACGTTTTGGCTGTTCTAGGTAGGAGCAATGTTGCTGCTTTAGTTCAATTGCTCACAGCAACATCTCCAAGGA TAAGGGAAAAAACAGTCACTGTTATATGCTCTCTTGTCGAATCAGGAAGCGGCGAAAACTGGCTAGTTTCTGAAGGAGTT CTTCCACCTCTCATAAGACTAGTTGAGTCTGGCAGTACTGTTGGTAAAGAGAAGGCTGTAGTATCTCTCCAGAGGCTGTC AATGTCAGCGGATACAACCCGCGCAATCGTTGGACACGGCGGGGTTCCTCCGTTGATTGAGCTTTGTCAATCTGGTGAAT CTGTGTCACAGGCTGCTGCTGCTTGTGCTTTGAAGAATATATCTTCTGTTCCTGAAGTGAGACAGGTTCTGGCTGAAGAA GGTGTTGTGAAGGTTATGATCAATCTCCTAAATTTTGGAATTTTGCTTGGTTCCAAAGAGTATGCTGCAGAGTGCTTGCA GAATCTCACTGCAAGCAATGAAAATCTGAGAAGGTCTGTGGTATCCGAAGGCGGTGTTCGGAGTCTCCTGGATTATCTTG ATGGACCTCTTCCCCAAGAATGTGCTGTTGGAGCATTGAGGAACCTTGTTGGATCAGTTTCCGAGGAAGTTTTGGTTTCT CTCGGTTTGATTCCCCGTTTGGTTCATGTGCTCAAGTCTGGATCCTTAGGTGCTCAGCAAGCCGCTGTGTCTGTTATCTG CAGGATTTGCAGCTCAATGGAGATGAAGAAGATGGTTGGTGAAGCTGGATGCATCCCTCTTCTTGTGAAGGTGCTTGAAG CTAAAGCAAACGGTATTAGAGAGGTTTCTGCTCAAGCAATTGCAAGCTTGATGGTTTTGTCCCAGAACCGGAGAGAAGTT AAGAAGGATGATAAAAGTGTGCCAAACCTGGTTCAGTTGCTTGATCCGAGTCCTCAAAACACTGCAAAAAAGTATGCGGT TTCTTGCCTTGGATCACTCTCCTCATGTAAGAAATGTAAGAAACTGATGGTTTCTTATGGAGCAATTGGGTATCTGAAGA AGCTTTCAGAGATGGAGATTCCAGGAGCTAAAAAGCTGCTTGAGCGGTTAGAAAGAGGGAAATTGAGAAGCTTGTTCAGC AGAAAATAG
Protein sequence (LotjaGi3g1v0376200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEDCGEAVAVDTRSTEEWLLQAQELVPVALAKAKEVKGFTVRWKMIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQAV SKTLREAIELAEFCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLALTVNGPIAESDITTHSNIRE LLARLQIGHLEAKHKALDKLYDAMREDEKNVLAVLGRSNVAALVQLLTATSPRIREKTVTVICSLVESGSGENWLVSEGV LPPLIRLVESGSTVGKEKAVVSLQRLSMSADTTRAIVGHGGVPPLIELCQSGESVSQAAAACALKNISSVPEVRQVLAEE GVVKVMINLLNFGILLGSKEYAAECLQNLTASNENLRRSVVSEGGVRSLLDYLDGPLPQECAVGALRNLVGSVSEEVLVS LGLIPRLVHVLKSGSLGAQQAAVSVICRICSSMEMKKMVGEAGCIPLLVKVLEAKANGIREVSAQAIASLMVLSQNRREV KKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSSCKKCKKLMVSYGAIGYLKKLSEMEIPGAKKLLERLERGKLRSLFS RK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 562 | 562 | 0.0 | – | |
| PANTHER | 1 | 562 | 562 | 0.0 | – | |
| Gene3D | 156 | 376 | 221 | 1.7E-35 | ||
| SMART | 187 | 227 | 41 | 33.0 | ||
| SUPERFAMILY | 199 | 542 | 344 | 8.64E-50 | ||
| SMART | 269 | 309 | 41 | 0.012 | ||
| Pfam | 272 | 309 | 38 | 9.6E-7 | ||
| SMART | 310 | 351 | 42 | 23.0 | ||
| SMART | 352 | 391 | 40 | 0.85 | ||
| Gene3D | 377 | 554 | 178 | 1.4E-24 | ||
| SMART | 392 | 431 | 40 | 19.0 | ||
| SMART | 432 | 472 | 41 | 4.0 | ||
| SMART | 473 | 515 | 43 | 29.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0376200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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