Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0376200 |
Transcript ID | LotjaGi3g1v0376200.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box/LRR protein; TAIR: AT1G80630.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20; TrEMBL-Plants: tr|I1KGW4|I1KGW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0376200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76890900..76896266) extracted from Lotus japonicus Gifu genome v1.2.
GTCCCTAACCTTTGCCAAAACGTTTGGTTTTAGTCCCTCCGGAGCTCTGGGTCAACGCCGGAGCTCCGATGGCCCATGTG GCATGGCCACGTGGATTAATGAGGCCATGTGTTATTTTTTTTTCTTTTAAATTCTAAAAAAAATTAACTATTTCTTAACA CCATAATTAAAACTCTTCATTCTAATCAATATCTTCTTCTTCAACTGAGTTATCATCTTCAGTTTTGTACTTGACCAGAA CCAAATCTATTGTACACCCCAAGCCCCTTCCCATTCCACACAGACAGCACGCATCAAGCCACCACTCCTCACCACCACAT CAACACCCAAAGAAAAAAAAGGGGGAAACATTCAAGAGAGAAGAATATCCGAAATTGCAACCCAAAATGGCACCACGGAT CTGAGCATCGAGTAAGAGAGAAAGAGAGAGACCGCGAGCAGAGGGAGAAGGAGACTTGAACATAGCAGATTGGAACCCTA ATTTCTGGGTATTGTTTGAGGTGAGAAGGATCTTCTCTGTTGTGTCTTGAAACCCTAATTTATGGGTATTGTTTGAGGTC CAGATGAGGTAGGAGATGAAGGCCTCGTAGGAGAGTGGTCTTCGGTTTCTGGGTCTACGTTTCCTCTTCTCCTTGTCGTT CTTCTGAATCTGGCGCTCGCGGCGGCAAGATCTAGTGCGATCACCATGCCGTTGTTGAAGATAGATTCGAGGATCCTCAT GCTTGTGTAGATTGCTTGTTGGAGACGAGATATTTCAATTGATTTGAACTGTATAGAAGTTGTGTAGCAGAGTTATTGTG GAAAAGGGTAGCTCTTGGTGGTGGATGTGTTTATGCGTGTTCTGTGGTGGCTATTGTAATTATGGTGTTAAGAAATAGTT CATTTTTTTTTAGAATTTAAAATAAATTTTTTTTCCACCTGGCCTCATTAAACTGACGTGGCCATGCCACATGGGCCACC GAAGCTCCGGCGTTGACCCAGAGCTCCGGAGGGACTAAAACCAAACGTTTTGGCAAAGGTTAGGGACTAAACCCCACCTT TGCTCCGGCGAGGGACGAAAACCAGGTATTATGGAAAGGTTAGGGACGTAAAACTTATTTAAGCGTAGGCCACGGTTCAA TAGTGAAGCTGCATGGGATGAACTTTAAAGTTCCCAATGTGGAGGTGTTGAGCTTAGCGCATTTAGGAATTGATGATGAA ACACTCTCTATGGTCTCAAAGAGTTTTTGTAGGCTTAAGTACCTGGACCTGGAATCTTGTCCTAATGTAACAGCCAAGGG AGTGAGGAAAGTAGTAGAAAACTGCAAACAACTGAGAGAAATAAATTTGAGCAACTGTAAACATGATGTTTTCTTCACAT ATGATTTTGACCTCCACTTTGAGAGAAATGAGAGAAATTCGAATATTTAAGATAATGTCTACAAAGAAACAAACAAATAA GGAACAAATGAAAACAATGTCGGCAGGAGATATGTACTTTTTACCAGAGGAGTGTTGGGAATGTGTCTTCAAATTCCTCA ACAACAACAACCACGACCACCATCACTTGGAGTCTCTGTCCCTTGTCTCCAAGCAATTCCTCTCCATCACCAACCGCATC CGATTCTCCCTCGCCGTCCACGACGACCTACTCCCCTTCCTCCCTCGCCTCCTCCACAGGTTCCCCAACCTCACCTCCCT CGACCTCACGCGCTTCCGCGGTGACCTCGACGCGCTTCTCCTCCAAATCTCGCGTTTCCCCTTGCGCCGCCTCACATCGC TTGACTTCTCGCACCATGAAACGTTTCCGGCAAATGGGTTGCGAGCTTTGGCCGAAAACACGAAAACCTTGACCTCCCTC ACCTCCTCCGAGGGTTCTCTCGCAACCGCCGACCTCCACCTCATCACCGATTGTTTCCCTTTCCTCCAAGAACTCGACAT TCGCATCAAGGTACATGACCATTTTCCCCTGGCGCTTCCCAAGCTCCTCCGCAAGGTTACTCTCTATTGCGGACCCTTCA ACATCAACGACGCAGAGCTTATCAGTGTGTGCAACAACTGTGAGTTTCTCCAAGAATTGGCGATCCCTGATTGCGCTTCT ATAACCCAACATGGCATTGCTTCCGCGATCCGCCAGAGACCCGGATTGAGGTCTTTCTTCGTTGGCAAATTTAAATTTGA GAGAGGGGATTTTGAGAGTCCCTTTATCACCGCAAGCTTCATTGATTCGTTGGTGAGTTTGAAGAGCTTGACTTGTCTTG TTTTTAGGGATTCGTTCATCTCGGATGAGTTGCTCTGCTCTGTTGCAGAGGAAGGTCTTCCTTTGAGGAAGCTTGTCCTC GATTATTGCCGCAATTACACCTATGCTGGAATCTCTTGCTTGTTGTCAAGGTGTAAGTTTGTCCAGCACTTGGCTCTTCG AAGTGCTGAGTTTCTGAATGATCAGCTTGTGGCAGACTTGTCTGTGTTTCTGGGTAATTTGATATCTATAGACCTTAGTT GCTGTCAGAGGTTCACAGAGTTAACCCTTTTTGCACTTATCAGGAACTGTTCTTTGCTCCGTGAGATCGAAATGGAGATA TCAGGGATTGGGCAAAAGAATAATTATTTAATGAATTGTTGTGTGAACCCTCATGTGAAGTTTCTCCATTTGGCTTGGAG TTCATGTATGCGAGGTGAAATACTCAAAAAGTTGAGTTTTGTCTGCCCCAATTTGGAGCTTCTTGACTTGAGATTTTGCT TTCAGTCTAAACTATCTGAAGGTGTTGTTGAAGTTTTGAGGAGATGCAGTAAGATTAGGCATTTGAGCCTAGGCCACGGT TCAACAGTGAAGCTGCATGGGGTGAACTTTGAAGTTCCCAATGTGGAGGTGTTGAGCTTCGCGCATTCAGGAATTGGTGA TGGAACACTCTCTGTGGTCTCAAAGAGTTTTTGTAGGCTTAAGTACCTGGACCTGGAATCTTGTCCTAATGTAACAGCCA AGGGAGTGAGGAAAGTAGTAGAAAACTGCAAACAACTGAGAGAGATAAAATTGAAGAACTGTAAACATGTGGCTGGTGAT GTTGTTGATTGGATGGTATTTTCAAGGCCAACACTGAGAAAGATAATGGCTCCACCTGATTTTAAACGAAGTGCCAGCCA GGATGAACTCTTCTTGCGTCATGGATGTCGTGTCTGCAGGTGAGATGGAGTGAAGTGAGGGAGGAAGATAAACACTGAGG AGGTTAATGTTGTTGTATTTTGAGTGTTTAATATTTACATATATTTGTCCAAACTTTTAGTTTGGATTGGATTTACATGT ATTTCTCATTTGTACACACAATCCATATTTTATAACACATTGGTCTCAATACTGCATGCATCTCACTCAGTCATCTTTGG GCTTCAGGGACTGTAATGGAAAAGACTTTTAGTATAGCAGCCTGATTCAAAGCTTTTACTCATTTCCAAACTTTGCTATC ATGAGTGGCATACTTAGAACTGATACATCTTTTGGGCTTATTCTCAAGCTGTGGTTGGGATGACAAATTATTTGGTTATT GTTGCCGAAGAACATTTTGGTTATTGTTTCTGTTAAAGCATTAAAGGAAATTCCTAATTCTGCTCTTGTTTAGTCCCTAG CTCATATTGTTCACCATGGAGATAGCATTACACTGCTAGTGTTTGTGTCTTTACAAAGTTCATATTGTTTGCTTCCACTT GATTTAGTTTTGTCTGCTTTTCTATTCAGATGTTGTTTTTTCTGGAAAATTTGAAAAATGGTTATTTGATTCCTATGATT CTGATCTAATATGGTCAATGGTTTCTTATATGTCAATCTTTCTTTTTATCATATAAGGATGGTGTCCCATTCTTAAATTT TGTGATGCCAGTGTGATGACAGGAAATAGAACTGTCTGTATTATTTATTCTTAGTCCCTTGTTTCTAATTGAGTGTAGTT TTCATTGACACACACCACACTGTTAGTTTGTGTTATGGGCCAAAGAGAGTTCACTGTTCTATCACATGTAATTGATTATT TATCCCTCTCATGTGCAGGTAGAAGATTATGGGGTTTTCCAAGATTTGTTGGTGACTGTGCAAGTGGTATTAAGAAGTAT CCTCCAGGAACAATTTCAGAGCAGAAGAGTTATATCACTAATTCTTACGATTTCCCTTTTTTTTTTTTCTGTTGCTTTAC TCCACATATGCATGCGTAGCCAGTCTGAAGCCCGGACAAAGGAAGAGGGTTGTGTTATGCCTCGACCACCAACGTAAAAC CTCTCGATATCTTCAATATTTTGTTTGGTTGCTTGTAACTTCATTTTTTTTCATCTCCTTTGTGGCTGCATTGGTGAGAA GTAGAACTGTAGCCCAATCACAAAACTTATGATGAGTTACACTTTATTTGTTTTGCACCAAATCCCCTCTTCAATAAAAA AAATAATAGAAATTTAACCATGAAAATTGTAAAAAATAAATTAGAACCTCCGCACTAAATCAGACCTTTGCTTTGGGACT TTTGCAGTAAAGGAAAATAGTTTCTATTTGCTTGTGCTTAAAAGTCATTCATTACTATTCATTATAGAAACATGGTACAA ATAAGTTGGTTGACTGTGAACTTGTTTTTGAGATCAAAGCTGCACCAAAAAAATATAAGAGTGGGGGGTTAATTGGTTTG AAAATATCATTTAGCATAGCTGATTATCTTAATTTGCTGTTTGTTTGTTTGTTTGTTTGTCTTACTTAAAACTATAGCGA ACTGTGTGCCCTCTCTTTAGTACATCCAAAGCTGAATAGTATTATTGAAATCCTTATAATTTTAACTATCTAAGTCTCAT CTATACAAAACTCTTTGATGTCAATTTCAGTCAATTACTTTGTTGCTTTTATTGGCACCTATGTTTAAATATGTTTAAGT AATAGCCCCTCTTTTCTTTTTCCCACTGAGAGGGATGTTCTCACTTCTCACTATTAAACTTGATGATCCCCATTTCTGGT TTATTGTTTAATTGTTGATCAAAGATTACATTCCAGTTTGTGGTGTTCTTTCTTCTTTGCAGACATCTCAAACATGAGGA AAAGCGATTCATGGAGGAGGAGCTGCAGCGTAGCATTGTGGTTAACCACAAATGAAGGATGTTGAAGAAGCATGTACATC ACCTTATGACTTATGAGCAAGATGATATGCATCAAAAGTGAACCAGAAACAGGATTGATTCTTTCAATTCTATTCGTTGA GTATTGTGATTAGGTAACCGGATGCAACATTTTGAACAAGCATGCAAAAAGTCATACGAAGCCTATAACTAGTAAAATTT TGCTAGGCATTGGAACAAAATTTTAATGCTTTGTTACTAACCTGTTTACAAGTTTACTTTTAATAGAAAATATTTTTTTA AAGAGAC
CDS sequence (LotjaGi3g1v0376200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTTTCTTCACATATGATTTTGACCTCCACTTTGAGAGAAATGAGAGAAATTCGAATATTTAAGATAATGTCTAC AAAGAAACAAACAAATAAGGAACAAATGAAAACAATGTCGGCAGGAGATATGTACTTTTTACCAGAGGAGTGTTGGGAAT GTGTCTTCAAATTCCTCAACAACAACAACCACGACCACCATCACTTGGAGTCTCTGTCCCTTGTCTCCAAGCAATTCCTC TCCATCACCAACCGCATCCGATTCTCCCTCGCCGTCCACGACGACCTACTCCCCTTCCTCCCTCGCCTCCTCCACAGGTT CCCCAACCTCACCTCCCTCGACCTCACGCGCTTCCGCGGTGACCTCGACGCGCTTCTCCTCCAAATCTCGCGTTTCCCCT TGCGCCGCCTCACATCGCTTGACTTCTCGCACCATGAAACGTTTCCGGCAAATGGGTTGCGAGCTTTGGCCGAAAACACG AAAACCTTGACCTCCCTCACCTCCTCCGAGGGTTCTCTCGCAACCGCCGACCTCCACCTCATCACCGATTGTTTCCCTTT CCTCCAAGAACTCGACATTCGCATCAAGGTACATGACCATTTTCCCCTGGCGCTTCCCAAGCTCCTCCGCAAGGTTACTC TCTATTGCGGACCCTTCAACATCAACGACGCAGAGCTTATCAGTGTGTGCAACAACTGTGAGTTTCTCCAAGAATTGGCG ATCCCTGATTGCGCTTCTATAACCCAACATGGCATTGCTTCCGCGATCCGCCAGAGACCCGGATTGAGGTCTTTCTTCGT TGGCAAATTTAAATTTGAGAGAGGGGATTTTGAGAGTCCCTTTATCACCGCAAGCTTCATTGATTCGTTGGTGAGTTTGA AGAGCTTGACTTGTCTTGTTTTTAGGGATTCGTTCATCTCGGATGAGTTGCTCTGCTCTGTTGCAGAGGAAGGTCTTCCT TTGAGGAAGCTTGTCCTCGATTATTGCCGCAATTACACCTATGCTGGAATCTCTTGCTTGTTGTCAAGGTGTAAGTTTGT CCAGCACTTGGCTCTTCGAAGTGCTGAGTTTCTGAATGATCAGCTTGTGGCAGACTTGTCTGTGTTTCTGGGTAATTTGA TATCTATAGACCTTAGTTGCTGTCAGAGGTTCACAGAGTTAACCCTTTTTGCACTTATCAGGAACTGTTCTTTGCTCCGT GAGATCGAAATGGAGATATCAGGGATTGGGCAAAAGAATAATTATTTAATGAATTGTTGTGTGAACCCTCATGTGAAGTT TCTCCATTTGGCTTGGAGTTCATGTATGCGAGGTGAAATACTCAAAAAGTTGAGTTTTGTCTGCCCCAATTTGGAGCTTC TTGACTTGAGATTTTGCTTTCAGTCTAAACTATCTGAAGGTGTTGTTGAAGTTTTGAGGAGATGCAGTAAGATTAGGCAT TTGAGCCTAGGCCACGGTTCAACAGTGAAGCTGCATGGGGTGAACTTTGAAGTTCCCAATGTGGAGGTGTTGAGCTTCGC GCATTCAGGAATTGGTGATGGAACACTCTCTGTGGTCTCAAAGAGTTTTTGTAGGCTTAAGTACCTGGACCTGGAATCTT GTCCTAATGTAACAGCCAAGGGAGTGAGGAAAGTAGTAGAAAACTGCAAACAACTGAGAGAGATAAAATTGAAGAACTGT AAACATGTGGCTGGTGATGTTGTTGATTGGATGGTATTTTCAAGGCCAACACTGAGAAAGATAATGGCTCCACCTGATTT TAAACGAAGTGCCAGCCAGGATGAACTCTTCTTGCGTCATGGATGTCGTGTCTGCAGGTGA
Protein sequence (LotjaGi3g1v0376200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMFSSHMILTSTLREMREIRIFKIMSTKKQTNKEQMKTMSAGDMYFLPEECWECVFKFLNNNNHDHHHLESLSLVSKQFL SITNRIRFSLAVHDDLLPFLPRLLHRFPNLTSLDLTRFRGDLDALLLQISRFPLRRLTSLDFSHHETFPANGLRALAENT KTLTSLTSSEGSLATADLHLITDCFPFLQELDIRIKVHDHFPLALPKLLRKVTLYCGPFNINDAELISVCNNCEFLQELA IPDCASITQHGIASAIRQRPGLRSFFVGKFKFERGDFESPFITASFIDSLVSLKSLTCLVFRDSFISDELLCSVAEEGLP LRKLVLDYCRNYTYAGISCLLSRCKFVQHLALRSAEFLNDQLVADLSVFLGNLISIDLSCCQRFTELTLFALIRNCSLLR EIEMEISGIGQKNNYLMNCCVNPHVKFLHLAWSSCMRGEILKKLSFVCPNLELLDLRFCFQSKLSEGVVEVLRRCSKIRH LSLGHGSTVKLHGVNFEVPNVEVLSFAHSGIGDGTLSVVSKSFCRLKYLDLESCPNVTAKGVRKVVENCKQLREIKLKNC KHVAGDVVDWMVFSRPTLRKIMAPPDFKRSASQDELFLRHGCRVCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 46 | 602 | 557 | 2.8E-196 | – | |
PANTHER | 46 | 602 | 557 | 2.8E-196 | – | |
Gene3D | 47 | 369 | 323 | 1.1E-29 | ||
SUPERFAMILY | 66 | 264 | 199 | 9.42E-11 | – | |
SUPERFAMILY | 93 | 579 | 487 | 4.32E-23 | – | |
SMART | 134 | 159 | 26 | 57.0 | ||
SMART | 233 | 258 | 26 | 59.0 | ||
SMART | 318 | 343 | 26 | 210.0 | ||
SMART | 344 | 369 | 26 | 620.0 | ||
SMART | 370 | 395 | 26 | 12.0 | ||
Gene3D | 389 | 580 | 192 | 6.2E-23 | ||
SMART | 448 | 474 | 27 | 77.0 | ||
SMART | 523 | 548 | 26 | 0.31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0376200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…