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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0376200 |
| Transcript ID | LotjaGi3g1v0376200.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT1G80630.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20; TrEMBL-Plants: tr|I1KGW4|I1KGW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0376200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76890900..76896266) extracted from Lotus japonicus Gifu genome v1.2.
GTCCCTAACCTTTGCCAAAACGTTTGGTTTTAGTCCCTCCGGAGCTCTGGGTCAACGCCGGAGCTCCGATGGCCCATGTG GCATGGCCACGTGGATTAATGAGGCCATGTGTTATTTTTTTTTCTTTTAAATTCTAAAAAAAATTAACTATTTCTTAACA CCATAATTAAAACTCTTCATTCTAATCAATATCTTCTTCTTCAACTGAGTTATCATCTTCAGTTTTGTACTTGACCAGAA CCAAATCTATTGTACACCCCAAGCCCCTTCCCATTCCACACAGACAGCACGCATCAAGCCACCACTCCTCACCACCACAT CAACACCCAAAGAAAAAAAAGGGGGAAACATTCAAGAGAGAAGAATATCCGAAATTGCAACCCAAAATGGCACCACGGAT CTGAGCATCGAGTAAGAGAGAAAGAGAGAGACCGCGAGCAGAGGGAGAAGGAGACTTGAACATAGCAGATTGGAACCCTA ATTTCTGGGTATTGTTTGAGGTGAGAAGGATCTTCTCTGTTGTGTCTTGAAACCCTAATTTATGGGTATTGTTTGAGGTC CAGATGAGGTAGGAGATGAAGGCCTCGTAGGAGAGTGGTCTTCGGTTTCTGGGTCTACGTTTCCTCTTCTCCTTGTCGTT CTTCTGAATCTGGCGCTCGCGGCGGCAAGATCTAGTGCGATCACCATGCCGTTGTTGAAGATAGATTCGAGGATCCTCAT GCTTGTGTAGATTGCTTGTTGGAGACGAGATATTTCAATTGATTTGAACTGTATAGAAGTTGTGTAGCAGAGTTATTGTG GAAAAGGGTAGCTCTTGGTGGTGGATGTGTTTATGCGTGTTCTGTGGTGGCTATTGTAATTATGGTGTTAAGAAATAGTT CATTTTTTTTTAGAATTTAAAATAAATTTTTTTTCCACCTGGCCTCATTAAACTGACGTGGCCATGCCACATGGGCCACC GAAGCTCCGGCGTTGACCCAGAGCTCCGGAGGGACTAAAACCAAACGTTTTGGCAAAGGTTAGGGACTAAACCCCACCTT TGCTCCGGCGAGGGACGAAAACCAGGTATTATGGAAAGGTTAGGGACGTAAAACTTATTTAAGCGTAGGCCACGGTTCAA TAGTGAAGCTGCATGGGATGAACTTTAAAGTTCCCAATGTGGAGGTGTTGAGCTTAGCGCATTTAGGAATTGATGATGAA ACACTCTCTATGGTCTCAAAGAGTTTTTGTAGGCTTAAGTACCTGGACCTGGAATCTTGTCCTAATGTAACAGCCAAGGG AGTGAGGAAAGTAGTAGAAAACTGCAAACAACTGAGAGAAATAAATTTGAGCAACTGTAAACATGATGTTTTCTTCACAT ATGATTTTGACCTCCACTTTGAGAGAAATGAGAGAAATTCGAATATTTAAGATAATGTCTACAAAGAAACAAACAAATAA GGAACAAATGAAAACAATGTCGGCAGGAGATATGTACTTTTTACCAGAGGAGTGTTGGGAATGTGTCTTCAAATTCCTCA ACAACAACAACCACGACCACCATCACTTGGAGTCTCTGTCCCTTGTCTCCAAGCAATTCCTCTCCATCACCAACCGCATC CGATTCTCCCTCGCCGTCCACGACGACCTACTCCCCTTCCTCCCTCGCCTCCTCCACAGGTTCCCCAACCTCACCTCCCT CGACCTCACGCGCTTCCGCGGTGACCTCGACGCGCTTCTCCTCCAAATCTCGCGTTTCCCCTTGCGCCGCCTCACATCGC TTGACTTCTCGCACCATGAAACGTTTCCGGCAAATGGGTTGCGAGCTTTGGCCGAAAACACGAAAACCTTGACCTCCCTC ACCTCCTCCGAGGGTTCTCTCGCAACCGCCGACCTCCACCTCATCACCGATTGTTTCCCTTTCCTCCAAGAACTCGACAT TCGCATCAAGGTACATGACCATTTTCCCCTGGCGCTTCCCAAGCTCCTCCGCAAGGTTACTCTCTATTGCGGACCCTTCA ACATCAACGACGCAGAGCTTATCAGTGTGTGCAACAACTGTGAGTTTCTCCAAGAATTGGCGATCCCTGATTGCGCTTCT ATAACCCAACATGGCATTGCTTCCGCGATCCGCCAGAGACCCGGATTGAGGTCTTTCTTCGTTGGCAAATTTAAATTTGA GAGAGGGGATTTTGAGAGTCCCTTTATCACCGCAAGCTTCATTGATTCGTTGGTGAGTTTGAAGAGCTTGACTTGTCTTG TTTTTAGGGATTCGTTCATCTCGGATGAGTTGCTCTGCTCTGTTGCAGAGGAAGGTCTTCCTTTGAGGAAGCTTGTCCTC GATTATTGCCGCAATTACACCTATGCTGGAATCTCTTGCTTGTTGTCAAGGTGTAAGTTTGTCCAGCACTTGGCTCTTCG AAGTGCTGAGTTTCTGAATGATCAGCTTGTGGCAGACTTGTCTGTGTTTCTGGGTAATTTGATATCTATAGACCTTAGTT GCTGTCAGAGGTTCACAGAGTTAACCCTTTTTGCACTTATCAGGAACTGTTCTTTGCTCCGTGAGATCGAAATGGAGATA TCAGGGATTGGGCAAAAGAATAATTATTTAATGAATTGTTGTGTGAACCCTCATGTGAAGTTTCTCCATTTGGCTTGGAG TTCATGTATGCGAGGTGAAATACTCAAAAAGTTGAGTTTTGTCTGCCCCAATTTGGAGCTTCTTGACTTGAGATTTTGCT TTCAGTCTAAACTATCTGAAGGTGTTGTTGAAGTTTTGAGGAGATGCAGTAAGATTAGGCATTTGAGCCTAGGCCACGGT TCAACAGTGAAGCTGCATGGGGTGAACTTTGAAGTTCCCAATGTGGAGGTGTTGAGCTTCGCGCATTCAGGAATTGGTGA TGGAACACTCTCTGTGGTCTCAAAGAGTTTTTGTAGGCTTAAGTACCTGGACCTGGAATCTTGTCCTAATGTAACAGCCA AGGGAGTGAGGAAAGTAGTAGAAAACTGCAAACAACTGAGAGAGATAAAATTGAAGAACTGTAAACATGTGGCTGGTGAT GTTGTTGATTGGATGGTATTTTCAAGGCCAACACTGAGAAAGATAATGGCTCCACCTGATTTTAAACGAAGTGCCAGCCA GGATGAACTCTTCTTGCGTCATGGATGTCGTGTCTGCAGGTGAGATGGAGTGAAGTGAGGGAGGAAGATAAACACTGAGG AGGTTAATGTTGTTGTATTTTGAGTGTTTAATATTTACATATATTTGTCCAAACTTTTAGTTTGGATTGGATTTACATGT ATTTCTCATTTGTACACACAATCCATATTTTATAACACATTGGTCTCAATACTGCATGCATCTCACTCAGTCATCTTTGG GCTTCAGGGACTGTAATGGAAAAGACTTTTAGTATAGCAGCCTGATTCAAAGCTTTTACTCATTTCCAAACTTTGCTATC ATGAGTGGCATACTTAGAACTGATACATCTTTTGGGCTTATTCTCAAGCTGTGGTTGGGATGACAAATTATTTGGTTATT GTTGCCGAAGAACATTTTGGTTATTGTTTCTGTTAAAGCATTAAAGGAAATTCCTAATTCTGCTCTTGTTTAGTCCCTAG CTCATATTGTTCACCATGGAGATAGCATTACACTGCTAGTGTTTGTGTCTTTACAAAGTTCATATTGTTTGCTTCCACTT GATTTAGTTTTGTCTGCTTTTCTATTCAGATGTTGTTTTTTCTGGAAAATTTGAAAAATGGTTATTTGATTCCTATGATT CTGATCTAATATGGTCAATGGTTTCTTATATGTCAATCTTTCTTTTTATCATATAAGGATGGTGTCCCATTCTTAAATTT TGTGATGCCAGTGTGATGACAGGAAATAGAACTGTCTGTATTATTTATTCTTAGTCCCTTGTTTCTAATTGAGTGTAGTT TTCATTGACACACACCACACTGTTAGTTTGTGTTATGGGCCAAAGAGAGTTCACTGTTCTATCACATGTAATTGATTATT TATCCCTCTCATGTGCAGGTAGAAGATTATGGGGTTTTCCAAGATTTGTTGGTGACTGTGCAAGTGGTATTAAGAAGTAT CCTCCAGGAACAATTTCAGAGCAGAAGAGTTATATCACTAATTCTTACGATTTCCCTTTTTTTTTTTTCTGTTGCTTTAC TCCACATATGCATGCGTAGCCAGTCTGAAGCCCGGACAAAGGAAGAGGGTTGTGTTATGCCTCGACCACCAACGTAAAAC CTCTCGATATCTTCAATATTTTGTTTGGTTGCTTGTAACTTCATTTTTTTTCATCTCCTTTGTGGCTGCATTGGTGAGAA GTAGAACTGTAGCCCAATCACAAAACTTATGATGAGTTACACTTTATTTGTTTTGCACCAAATCCCCTCTTCAATAAAAA AAATAATAGAAATTTAACCATGAAAATTGTAAAAAATAAATTAGAACCTCCGCACTAAATCAGACCTTTGCTTTGGGACT TTTGCAGTAAAGGAAAATAGTTTCTATTTGCTTGTGCTTAAAAGTCATTCATTACTATTCATTATAGAAACATGGTACAA ATAAGTTGGTTGACTGTGAACTTGTTTTTGAGATCAAAGCTGCACCAAAAAAATATAAGAGTGGGGGGTTAATTGGTTTG AAAATATCATTTAGCATAGCTGATTATCTTAATTTGCTGTTTGTTTGTTTGTTTGTTTGTCTTACTTAAAACTATAGCGA ACTGTGTGCCCTCTCTTTAGTACATCCAAAGCTGAATAGTATTATTGAAATCCTTATAATTTTAACTATCTAAGTCTCAT CTATACAAAACTCTTTGATGTCAATTTCAGTCAATTACTTTGTTGCTTTTATTGGCACCTATGTTTAAATATGTTTAAGT AATAGCCCCTCTTTTCTTTTTCCCACTGAGAGGGATGTTCTCACTTCTCACTATTAAACTTGATGATCCCCATTTCTGGT TTATTGTTTAATTGTTGATCAAAGATTACATTCCAGTTTGTGGTGTTCTTTCTTCTTTGCAGACATCTCAAACATGAGGA AAAGCGATTCATGGAGGAGGAGCTGCAGCGTAGCATTGTGGTTAACCACAAATGAAGGATGTTGAAGAAGCATGTACATC ACCTTATGACTTATGAGCAAGATGATATGCATCAAAAGTGAACCAGAAACAGGATTGATTCTTTCAATTCTATTCGTTGA GTATTGTGATTAGGTAACCGGATGCAACATTTTGAACAAGCATGCAAAAAGTCATACGAAGCCTATAACTAGTAAAATTT TGCTAGGCATTGGAACAAAATTTTAATGCTTTGTTACTAACCTGTTTACAAGTTTACTTTTAATAGAAAATATTTTTTTA AAGAGAC
CDS sequence (LotjaGi3g1v0376200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTTTCTTCACATATGATTTTGACCTCCACTTTGAGAGAAATGAGAGAAATTCGAATATTTAAGATAATGTCTAC AAAGAAACAAACAAATAAGGAACAAATGAAAACAATGTCGGCAGGAGATATGTACTTTTTACCAGAGGAGTGTTGGGAAT GTGTCTTCAAATTCCTCAACAACAACAACCACGACCACCATCACTTGGAGTCTCTGTCCCTTGTCTCCAAGCAATTCCTC TCCATCACCAACCGCATCCGATTCTCCCTCGCCGTCCACGACGACCTACTCCCCTTCCTCCCTCGCCTCCTCCACAGGTT CCCCAACCTCACCTCCCTCGACCTCACGCGCTTCCGCGGTGACCTCGACGCGCTTCTCCTCCAAATCTCGCGTTTCCCCT TGCGCCGCCTCACATCGCTTGACTTCTCGCACCATGAAACGTTTCCGGCAAATGGGTTGCGAGCTTTGGCCGAAAACACG AAAACCTTGACCTCCCTCACCTCCTCCGAGGGTTCTCTCGCAACCGCCGACCTCCACCTCATCACCGATTGTTTCCCTTT CCTCCAAGAACTCGACATTCGCATCAAGGTACATGACCATTTTCCCCTGGCGCTTCCCAAGCTCCTCCGCAAGGTTACTC TCTATTGCGGACCCTTCAACATCAACGACGCAGAGCTTATCAGTGTGTGCAACAACTGTGAGTTTCTCCAAGAATTGGCG ATCCCTGATTGCGCTTCTATAACCCAACATGGCATTGCTTCCGCGATCCGCCAGAGACCCGGATTGAGGTCTTTCTTCGT TGGCAAATTTAAATTTGAGAGAGGGGATTTTGAGAGTCCCTTTATCACCGCAAGCTTCATTGATTCGTTGGTGAGTTTGA AGAGCTTGACTTGTCTTGTTTTTAGGGATTCGTTCATCTCGGATGAGTTGCTCTGCTCTGTTGCAGAGGAAGGTCTTCCT TTGAGGAAGCTTGTCCTCGATTATTGCCGCAATTACACCTATGCTGGAATCTCTTGCTTGTTGTCAAGGTGTAAGTTTGT CCAGCACTTGGCTCTTCGAAGTGCTGAGTTTCTGAATGATCAGCTTGTGGCAGACTTGTCTGTGTTTCTGGGTAATTTGA TATCTATAGACCTTAGTTGCTGTCAGAGGTTCACAGAGTTAACCCTTTTTGCACTTATCAGGAACTGTTCTTTGCTCCGT GAGATCGAAATGGAGATATCAGGGATTGGGCAAAAGAATAATTATTTAATGAATTGTTGTGTGAACCCTCATGTGAAGTT TCTCCATTTGGCTTGGAGTTCATGTATGCGAGGTGAAATACTCAAAAAGTTGAGTTTTGTCTGCCCCAATTTGGAGCTTC TTGACTTGAGATTTTGCTTTCAGTCTAAACTATCTGAAGGTGTTGTTGAAGTTTTGAGGAGATGCAGTAAGATTAGGCAT TTGAGCCTAGGCCACGGTTCAACAGTGAAGCTGCATGGGGTGAACTTTGAAGTTCCCAATGTGGAGGTGTTGAGCTTCGC GCATTCAGGAATTGGTGATGGAACACTCTCTGTGGTCTCAAAGAGTTTTTGTAGGCTTAAGTACCTGGACCTGGAATCTT GTCCTAATGTAACAGCCAAGGGAGTGAGGAAAGTAGTAGAAAACTGCAAACAACTGAGAGAGATAAAATTGAAGAACTGT AAACATGTGGCTGGTGATGTTGTTGATTGGATGGTATTTTCAAGGCCAACACTGAGAAAGATAATGGCTCCACCTGATTT TAAACGAAGTGCCAGCCAGGATGAACTCTTCTTGCGTCATGGATGTCGTGTCTGCAGGTGA
Protein sequence (LotjaGi3g1v0376200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMFSSHMILTSTLREMREIRIFKIMSTKKQTNKEQMKTMSAGDMYFLPEECWECVFKFLNNNNHDHHHLESLSLVSKQFL SITNRIRFSLAVHDDLLPFLPRLLHRFPNLTSLDLTRFRGDLDALLLQISRFPLRRLTSLDFSHHETFPANGLRALAENT KTLTSLTSSEGSLATADLHLITDCFPFLQELDIRIKVHDHFPLALPKLLRKVTLYCGPFNINDAELISVCNNCEFLQELA IPDCASITQHGIASAIRQRPGLRSFFVGKFKFERGDFESPFITASFIDSLVSLKSLTCLVFRDSFISDELLCSVAEEGLP LRKLVLDYCRNYTYAGISCLLSRCKFVQHLALRSAEFLNDQLVADLSVFLGNLISIDLSCCQRFTELTLFALIRNCSLLR EIEMEISGIGQKNNYLMNCCVNPHVKFLHLAWSSCMRGEILKKLSFVCPNLELLDLRFCFQSKLSEGVVEVLRRCSKIRH LSLGHGSTVKLHGVNFEVPNVEVLSFAHSGIGDGTLSVVSKSFCRLKYLDLESCPNVTAKGVRKVVENCKQLREIKLKNC KHVAGDVVDWMVFSRPTLRKIMAPPDFKRSASQDELFLRHGCRVCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 46 | 602 | 557 | 2.8E-196 | – | |
| PANTHER | 46 | 602 | 557 | 2.8E-196 | – | |
| Gene3D | 47 | 369 | 323 | 1.1E-29 | ||
| SUPERFAMILY | 66 | 264 | 199 | 9.42E-11 | – | |
| SUPERFAMILY | 93 | 579 | 487 | 4.32E-23 | – | |
| SMART | 134 | 159 | 26 | 57.0 | ||
| SMART | 233 | 258 | 26 | 59.0 | ||
| SMART | 318 | 343 | 26 | 210.0 | ||
| SMART | 344 | 369 | 26 | 620.0 | ||
| SMART | 370 | 395 | 26 | 12.0 | ||
| Gene3D | 389 | 580 | 192 | 6.2E-23 | ||
| SMART | 448 | 474 | 27 | 77.0 | ||
| SMART | 523 | 548 | 26 | 0.31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0376200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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