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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0392000 |
| Transcript ID | LotjaGi3g1v0392000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal transporter; TAIR: AT1G47240.1 NRAMP metal ion transporter 2; Swiss-Prot: sp|Q9C6B2|NRAM2_ARATH Metal transporter Nramp2; TrEMBL-Plants: tr|K7KZX0|K7KZX0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0392000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79053767..79055669) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATACAGAGTCACACAAAACTCAAGACCAACACGAAAAACTAGAACAAGAACAAGAAGAAGAGGAAGAAGAAAACCG GTTACTACAATCCGAATGCGAGACAATCCCACTCTCCTCTCCCCTCTCATCACCATTAACCCCGGAGGATGGAGATGCAG AGGATTTCGTCTATGCGGACAAGGACAAGGTCCGGATATTCGACCTGGAGTCCGCCGCCGGAGGCGGCGGCTCCAGCTCC ACGGCGGTGCCGCCGTTTTCTTGGAAGAAGCTGTGGCTGTTCACGGGGCCGGGGCTGCTGATGAGTGTGGCGTTCTTGGA CCCTGGGAACCTGGAAGGGGACCTGCAGGCTGGTGCAATTGCAGGGTACTCGCTACTTTGGCTGTTGATGTGGTCGACCA TCATGGGGCTATTGATACAGCTTCTGTCGGCGAGGCTTGGCGTGGCGACGGGGCGGCACCTGGCGGAGCTGTGCAGGGAG GAGTATTCCAATTGGGCTAGGTTGGTGCTGTGGTTCCTGGCTGAGGTGGCTCTCATTGCTGCTGATATTCAAGAGGTTAT TGGCAGTGCTATTGCTATCAAGATTCTTAGCCATGGGGTTCTTCCCATTTGGGCTGGTGTGATCATCACAGCCTTTGATT GGTAAGCCAACCAAATAGATTTTGATTTTATCATATGGTTTTGTTGTTCATCATGGTTTTGCGATCACATTGTGTTTGTG AAAGTGACTAAGTGAAAGTTATGGTTAGCTGATATTTTGATCCTGGTTTTGTCTCTTGTTGAACAGTTTCTTCTTTCTGT TTCTCGAGAATTATGGAGTGAGGAAGTTGGAAGGAGTTTTCGCGGTTTTCATCGGAACCATGGCCTTTTCTTTTGCATGG ATGTTCTTTGATACAAAGCCAAGTGAAGAAGAACTTGTGATGGGTACAGACTTATCTCATAACAGCAGTTTAGGCACATC CATTTGATTGTAAGATTTAAGATAAAAAATTGTACACTGGTGCCTTTTTGTTTGACAGATTTGGATGCTTATTGCAGGTC TTTTGATCCCAAGAGTTAGCTCAAAGACACTTCGCCAGGCTGTGGAAATTGTGGGTTGTGTCATAACCCCACATAATGTA TTCCTCCATTCTGCTTTGGTACAATCAAGGGACGTTGATATCCGTAACAAAAGCCAGGTTCAAGAGGCTCTGAATTACTA CTCAATTGAGTCCTCAGCTGCACTTTTAGTCACCTTGGTGATCAATCTATGTGTGATAACTGTTTTTGCTCGGGTGTTCT ATGGTACAGAACAGGCCAAGGGCATAGGATTAGTAAATGCAGGACAATATCTTGAGGAGAGGTATGGAGGAGGGTTGTTT CCAATTCTGTATATATGGGGTATTGGTTTGTTAGCAGCTGGACAAAGTAGCACCATCACTGGCACTTATGCTGGACAGTT TATAACAGAGGGATTTCTGAAGCTCAATATTAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAA CTATGATAGTGTCAATTGTTTTCAATACATCAGAAGGTTCATTGGATACCTTGAATGAATGGCTTAATGTGCTGCAATCA ATACAGATTCCTTTTGCACTTATCCCCCTTCTTACTTTGGTGTCCAAGGAGGAGGTCATGGGGACTTTCAGAATAGGGCC TATAGTAGAGGTAAGCTATATCCATATAACCTTTCAGTTACTTCTTATCCAAAATTTTAATACTGACTGAATTAAATGAT CTATGATTAACTTAAACGCTAATGAAGATGTTTCAATTATTTTACTGGGTAATTTTTAGACTTAATTGCATTTTTGGTCT ATTTTCTAGCTTAATTGCACTTTTATTCATTACATTTACATAGATATAGCCCTTTTAATTTAA
CDS sequence (LotjaGi3g1v0392000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATACAGAGTCACACAAAACTCAAGACCAACACGAAAAACTAGAACAAGAACAAGAAGAAGAGGAAGAAGAAAACCG GTTACTACAATCCGAATGCGAGACAATCCCACTCTCCTCTCCCCTCTCATCACCATTAACCCCGGAGGATGGAGATGCAG AGGATTTCGTCTATGCGGACAAGGACAAGGTCCGGATATTCGACCTGGAGTCCGCCGCCGGAGGCGGCGGCTCCAGCTCC ACGGCGGTGCCGCCGTTTTCTTGGAAGAAGCTGTGGCTGTTCACGGGGCCGGGGCTGCTGATGAGTGTGGCGTTCTTGGA CCCTGGGAACCTGGAAGGGGACCTGCAGGCTGGTGCAATTGCAGGGTACTCGCTACTTTGGCTGTTGATGTGGTCGACCA TCATGGGGCTATTGATACAGCTTCTGTCGGCGAGGCTTGGCGTGGCGACGGGGCGGCACCTGGCGGAGCTGTGCAGGGAG GAGTATTCCAATTGGGCTAGGTTGGTGCTGTGGTTCCTGGCTGAGGTGGCTCTCATTGCTGCTGATATTCAAGAGGTTAT TGGCAGTGCTATTGCTATCAAGATTCTTAGCCATGGGGTTCTTCCCATTTGGGCTGGTGTGATCATCACAGCCTTTGATT GTTTCTTCTTTCTGTTTCTCGAGAATTATGGAGTGAGGAAGTTGGAAGGAGTTTTCGCGGTTTTCATCGGAACCATGGCC TTTTCTTTTGCATGGATGTTCTTTGATACAAAGCCAAGTGAAGAAGAACTTGTGATGGGTCTTTTGATCCCAAGAGTTAG CTCAAAGACACTTCGCCAGGCTGTGGAAATTGTGGGTTGTGTCATAACCCCACATAATGTATTCCTCCATTCTGCTTTGG TACAATCAAGGGACGTTGATATCCGTAACAAAAGCCAGGTTCAAGAGGCTCTGAATTACTACTCAATTGAGTCCTCAGCT GCACTTTTAGTCACCTTGGTGATCAATCTATGTGTGATAACTGTTTTTGCTCGGGTGTTCTATGGTACAGAACAGGCCAA GGGCATAGGATTAGTAAATGCAGGACAATATCTTGAGGAGAGGTATGGAGGAGGGTTGTTTCCAATTCTGTATATATGGG GTATTGGTTTGTTAGCAGCTGGACAAAGTAGCACCATCACTGGCACTTATGCTGGACAGTTTATAACAGAGGGATTTCTG AAGCTCAATATTAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGATAGTGTCAATTGT TTTCAATACATCAGAAGGTTCATTGGATACCTTGAATGAATGGCTTAATGTGCTGCAATCAATACAGATTCCTTTTGCAC TTATCCCCCTTCTTACTTTGGTGTCCAAGGAGGAGGTCATGGGGACTTTCAGAATAGGGCCTATAGTAGAGATATAG
Protein sequence (LotjaGi3g1v0392000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNTESHKTQDQHEKLEQEQEEEEEENRLLQSECETIPLSSPLSSPLTPEDGDAEDFVYADKDKVRIFDLESAAGGGGSSS TAVPPFSWKKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLLIQLLSARLGVATGRHLAELCRE EYSNWARLVLWFLAEVALIAADIQEVIGSAIAIKILSHGVLPIWAGVIITAFDCFFFLFLENYGVRKLEGVFAVFIGTMA FSFAWMFFDTKPSEEELVMGLLIPRVSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDVDIRNKSQVQEALNYYSIESSA ALLVTLVINLCVITVFARVFYGTEQAKGIGLVNAGQYLEERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFL KLNIKKWLRALITRSCAIVPTMIVSIVFNTSEGSLDTLNEWLNVLQSIQIPFALIPLLTLVSKEEVMGTFRIGPIVEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 90 | 90 | - | – | |
| MobiDBLite | 1 | 53 | 53 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| Coils | 5 | 35 | 31 | - | – | |
| PANTHER | 18 | 477 | 460 | 3.1E-282 | ||
| PANTHER | 18 | 477 | 460 | 3.1E-282 | – | |
| MobiDBLite | 32 | 46 | 15 | - | – | |
| Hamap | 77 | 478 | 402 | 33.848 | ||
| TIGRFAM | 89 | 467 | 379 | 4.8E-123 | ||
| TMHMM | 91 | 110 | 20 | - | – | |
| Phobius | 91 | 106 | 16 | - | – | |
| Phobius | 107 | 125 | 19 | - | – | |
| Pfam | 112 | 473 | 362 | 2.8E-119 | ||
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 126 | 148 | 23 | - | – | |
| Phobius | 149 | 167 | 19 | - | – | |
| Phobius | 168 | 193 | 26 | - | – | |
| TMHMM | 168 | 190 | 23 | - | – | |
| PRINTS | 170 | 196 | 27 | 1.3E-74 | ||
| Phobius | 194 | 198 | 5 | - | – | |
| Phobius | 199 | 219 | 21 | - | – | |
| PRINTS | 200 | 219 | 20 | 1.3E-74 | ||
| TMHMM | 200 | 219 | 20 | - | – | |
| Phobius | 220 | 230 | 11 | - | – | |
| PRINTS | 225 | 246 | 22 | 1.3E-74 | ||
| TMHMM | 231 | 248 | 18 | - | – | |
| Phobius | 231 | 248 | 18 | - | – | |
| Phobius | 249 | 319 | 71 | - | – | |
| PRINTS | 274 | 297 | 24 | 1.3E-74 | ||
| Phobius | 320 | 341 | 22 | - | – | |
| TMHMM | 320 | 342 | 23 | - | – | |
| Phobius | 342 | 410 | 69 | - | – | |
| TMHMM | 363 | 385 | 23 | - | – | |
| PRINTS | 381 | 400 | 20 | 1.3E-74 | ||
| PRINTS | 409 | 426 | 18 | 1.3E-74 | ||
| Phobius | 411 | 429 | 19 | - | – | |
| Phobius | 430 | 440 | 11 | - | – | |
| Phobius | 441 | 461 | 21 | - | – | |
| PRINTS | 443 | 462 | 20 | 1.3E-74 | ||
| Phobius | 462 | 478 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0392000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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