Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0444900 |
Transcript ID | LotjaGi3g1v0444900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Mannan endo-1,4-beta-mannosidase-like protein; TAIR: AT2G20680.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q7Y223|MAN2_ARATH Mannan endo-1,4-beta-mannosidase 2; TrEMBL-Plants: tr|A0A151SEW7|A0A151SEW7_CAJCA Mannan endo-1,4-beta-mannosidase 2; Found in the gene: LotjaGi3g1v0444900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85792012..85796964) extracted from Lotus japonicus Gifu genome v1.2.
AACACAACAGACCAACGAGAAAAGTGAGATTTTCTCCTTAGTCTAATCAGCAACAGTTAATATTCACAGAAACGATTCAG TAAAACACGGCATTGTTGTTTGTCCCTCTTAAATGCTGTGAGACTGAGACAGTGGAGCTGAATCCCCACCCAGCATTGCT TCCTTCTCCTTCACAAACATTGATTTCACCGCACATTCATCATTCATGCATTCAACTCTTCATCATTCATTCAATCTTCT CTGCAACTTGGACTAGTTTCAAGATAAACATGATATGAGTCATTTTCTGTCTTCTTTGGGGTTGAACTGCAAAAGCAAAA ACACCACAACAACCATTCCCATTTTCATGCAGAGTCATTATTCCCAACTCACCCTATAAATCCCTTTAATTACAAACCCT AATTATACCAATTTACTCCAAACCACAACTAAATTTTCCCCATGCATTCATTCTTTTTGAGACCCTGATTTTCTTTTTCC TTTTTTCTTCTTGGTGAATTAGTAAAGTTAACACCTTTGAACCCCATTCATACTCTTCTCATTACAAAAAGAGAGATCTT AGCATTTTAATCAATTGGGGTTTCATTGTTTCAAGAACAATCAAAATCAATTCTGGGTCTAAAGGTAGTGGCTTTTGAGC AAAAGGCCAAAAGGGTACCTGGGAACCACCCCAATTTGTTGAATTTCGCTCTCAAACAATGGGGGTAAGAAATGGGATGT TGTATCATATTCTGGGGTTGTTATCGGTTTTGGCTTTCGTTTACATGTCATTTGGAGGGTTGAGGTTCAGGTTTGAGGAA GGGTCAGAAGTGGCTTTTGTGCAGAGAAACGGGACGCAGTTTGTGGTGGATGGGAAGGCTTTCTACGTAAACGGGTGGAA TTCTTATTGGTTGATGTTCCAGTCGGTGGATGTTGATTCCAGACACAGGGTTCGTGAAATGCTGAAAACTGGTGCTAAGA TGGGTCTCACTGTTTGTCGAACTTGGGGGTTCAATGATGGTGGTTATCATGCCCTTCAAACTTCCCCTGGTCGCTTTGAT GAACAAGCTTTCAAGGTACTGTGTGTTGTTCCTAGAATTTGTACTGTTGTGTTCTTTTTCTTGTGTCTTTTCCTAATGCC GACAGAAATTTGTGTTTGTATGCGTGTATGACAGTGTTCTGGTTATTGTTTTTGTTTATTGGGGTTTTCTTTTTATTTGA TTTTTGTCGTTGCCTTCTCAGGTTTTGTCTCTTTTCCTGAAATTGTGTTTGACTGTGTGATTGTAAACCTTGGCTGATTG TTGTAAACTTGTAACATATGACATGAATGGCGATATACTTGTCGCTTTAGAGCTGAATATTATAATGAAGTAAATTGAGA TAACATTGTTCTTGGGAAGTGATAGAATTCAGAGAAGAAGTGTCAGGCAGTCTCTCTTTGGGGTCAGTGGCTCAGTATCT AAGTGGAATCAATTTGAATGTGGTCCTTTTGTTATGATCCTATTTGTTCATTAGCTAGATGATTCAACAAGAAAAACGTC GGTCTTGTGTTATTCCTACTTCACCGTCCTTAATATATATGAGTTTTACAGTTGCCCTATAAATGGCGTCATGTTTCTGA CTTCTCACGAAAATCAGTTTTATAGTGACTTGTTAAAATGGTTTCTACTAGAAGCAATGAGTGGTTTATTTTTGAAAATT CTCATGCTACACTTTTCAATAGTCTTTTAAAAATTTATTCCGGTTGTCTTGTGGACTTATGTCTTGATGAATCTGTCTTT CCATTATGTCTGGATTGAATGAAAAATGCTTTTTGTTGCATTATTGATACTTCTTTTGCTCATGAAATGAGTAAGTTGTG TACTGCTCAGCACTATTTTTTGATGTATGGAAAGCATGCTGAGATTTGTTGGTGACTGGTAGCAGGCCTTGGATTATGTC ATAGCAGAAGCAGGGCAACAAGGAATTAGGCTACTCCTTAGCTTAGTAAATAACTTGGAAGGATTAGGTGGGAAGCCTCA GTATGTCAAATGGGCATGGCAAGATGGGGTAGGGTTAAGCTCGTCTGATGATTCTTTCTTCTTTGATCCATCAATCCGTA GTTATTTCAAGAATTACATCAAGGTATGACATGTCTATCTTTCTTTCTTTCCCCTCTTTCTATTTGCCCTATACCCTGCC ATCTATGGTCGCAGAAGCATTGTCTTGTGCTATTCAACATTGTTTTCATTTTACACACACATGGATAAACATACATACCA CACAACTTTCTAGGAAATATGAATTCGACAGATCTATTCATTGAATTAAAACTTCTTATTAAGTGGATCAAATGTGCAAA ATTGTAAAAAAAATTAAAATCAGTTCATACTTTATTAGACAACTCTATTTTAATATATAATATACTTCTTAAAATATGAG CAAATGTTGACTATAAGATTCCATACCTTTGAATTATTGATTTATTTGAAATTTTGAGCAAATGATTACCATATTAATAT CATATGAATTAATAGTTGGATTTGTTAAATTTATATTTGATAGAAAGTTATTAAGGGCAAGAGTTGGTAAGTAGGCCATA TTCTTTCCATTGACATCTTTTAGCACAAGCAAATACCTTAAATTGCCACCTAGCAAGTTTAGTGATGATACTTTTGGACT GCTATGTTCCTTACGATTCCTAAACTTTGTAGGCCTAACTTTTCTATTTTTTTTATTAGCGCCTAACTTTTCTATGATTT ATCTTACGAATGGTATACAGCATGACAAGTAGTTTGCATATTTGTTTCTGCTGGCCAGACCATTTTATTTGAAATTTGAG ATGCATTTTAATCACTTTATTCCACCACCCCCACCCCCTCGCCCCCGGAAAATTAAATCATGTTGACAAGCATTTGGAAC TTGAGGCTGGCGATGGCATCTTACTGACAAAATGTTCCACCATTTAGTACTTAACCATCTAGTTTTCCCACCCTATGAAG GAGTAAATTTGGGACTGAATCATCACTGCAGCAGTACAACCTTTGTGGGAAGCAAATACTGATATGACTAATGCAGAACT TTCTTTCCTTTTTCCTGCCTTGTATCCTTTTTATTTTTTGGTCTCACTGCTTTCTGCTCGCCTATGATTCGTGACTTAAT ATGTGGGTCAAAATTACATCTTCATTTACATGCTAAGTTGTATGTCTAACGCATATCTGTACTGTCCATTCAATTTTAGC TAAAATGTTTGCAAACCAAGATGTTCTTAGATAAATTAACAGTTTACCTAAATTTTTGTGCAGACTATCTTGACAAGGAA AAATACTATCACTGGAATTGAATATAGAAACGACCCCACCGTTTTTGGTTGGGAATTGATTAATGAACCTCGGTGCATGT CTGATCCTTCTGGTGACACTCTACAAGTAACTCCTTTGCCTGCTTTAACTTGACTACTTCAAATGTTCATGAAAAAATAT GTTAGCAATATCAATAGCTATTTCAAAAATTAGATTAATCACTTGCTGCTTCCTTTTTGGCTACGGGTTATAGAAATTAG CATTCATGAGGAGATTGAAAAGTTCAAATTTCTTTGTCTTGGAAGTCATGATCTCAAACGAATTTGTTCTGTCTATTTGC TCTAAACCACAGAATGCTGCACATTTTTCACTAGTGTGTAGCTGGTTTTGATTTGAAGGATTCAATATCTAATTTTAGCA ATTGTTTCTGACAATAATTTTTGACTCCATGTTGAAAAATATATAGATAAAAATAAGGACAATGTTGAAACCTTTCAACT CAATTAAAATTGCTTTTGTTTTTAATGTAAATTCATAGGAAAGATAGGGGGAAATAAGAGCAGTTATTGTTCACATTTTA TTTAGATATCTGAGTATACACTTTACTCAATTGCCATAGAATTGCAGGAGTGGATAGAAGAAATGTCAGCTTTTGTCAAA TTGATTGACAAGAACCATCTGGTGACTGTTGGGCTTGAAGGTTTCTATGGTCCTCATGACCCGAAAAGTTCGACTGTCAA CCCTGGATATTGGGCATCCCAAGTTGGGTCTGATTTTATTCGGAATTCCAAAATCTCAAATATTGATTTCACCTCTGTTC ATATCTATGGTGACCAATGGTAAGCATTGCATGAATACTTTATCTGTTTTAGATTTGCTCATAATCATAAGAAACAAGAA CTAAATTTGAGAAGTGCCACAGAACACAATCTGCAGAAGGAAGTTCCATAGTTTTCTTCTGATGAGTTTTTTATGTTGTC TTCACTGATCAACTAGTGCAGCAAGAAATCTTGAGATTTATATTATATTTCCATTTTACATGTCTTATGATCTGCATTTG GAAGCACACATCCAAAATTTTCTGATGATTATTATTTGAATAGGTCTTACAAGCAAGAATTTGAAGATCAACTGAAATTT GTCTCCAAGTGGATGCTTTCCCACATTGAAGATGGTGATGAAGTATTGCATAAACCTGTCTTGTTCTCTGAATATGGATT GTCACAAAGAATCCAGAACTTTTCCGCGTCTGACCGAGAGAAGATACACAAAACTATTCTAGACATAATTTACAAATCTG CCAAAAGAAACAAATCTGGAGCAGGTACTCTGATTTGGCAATTCTTGGTTGATGGAATCAATGAGTTTTCTGATGAATAT GGGATTGTGCCAGGGGGAAATTCATCAACTTATTCACTGTTAGTTGAACAGTCATGCAGATTGGCCAAAGTTAAGGGATG GCCACAACAGGATGTAAAATTCAAACAAGTTTGTTAACAAGGCAATAGAAAACAAATATTATAATATAATAGAAATTTAG ATAAAAGATGATTCCTTGGTTTATGGAGTTACACCATGGGTTTTTGTACAATGTTGCAGTGAAATAATTACTTTAAAGTT GAGTACATACTAATACACTAGTGTGGTAACCATGTACAAGAGATTTCTTATAAATAAAGTATTATTTAAACTA
CDS sequence (LotjaGi3g1v0444900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGTAAGAAATGGGATGTTGTATCATATTCTGGGGTTGTTATCGGTTTTGGCTTTCGTTTACATGTCATTTGGAGG GTTGAGGTTCAGGTTTGAGGAAGGGTCAGAAGTGGCTTTTGTGCAGAGAAACGGGACGCAGTTTGTGGTGGATGGGAAGG CTTTCTACGTAAACGGGTGGAATTCTTATTGGTTGATGTTCCAGTCGGTGGATGTTGATTCCAGACACAGGGTTCGTGAA ATGCTGAAAACTGGTGCTAAGATGGGTCTCACTGTTTGTCGAACTTGGGGGTTCAATGATGGTGGTTATCATGCCCTTCA AACTTCCCCTGGTCGCTTTGATGAACAAGCTTTCAAGGCCTTGGATTATGTCATAGCAGAAGCAGGGCAACAAGGAATTA GGCTACTCCTTAGCTTAGTAAATAACTTGGAAGGATTAGGTGGGAAGCCTCAGTATGTCAAATGGGCATGGCAAGATGGG GTAGGGTTAAGCTCGTCTGATGATTCTTTCTTCTTTGATCCATCAATCCGTAGTTATTTCAAGAATTACATCAAGACTAT CTTGACAAGGAAAAATACTATCACTGGAATTGAATATAGAAACGACCCCACCGTTTTTGGTTGGGAATTGATTAATGAAC CTCGGTGCATGTCTGATCCTTCTGGTGACACTCTACAAGAGTGGATAGAAGAAATGTCAGCTTTTGTCAAATTGATTGAC AAGAACCATCTGGTGACTGTTGGGCTTGAAGGTTTCTATGGTCCTCATGACCCGAAAAGTTCGACTGTCAACCCTGGATA TTGGGCATCCCAAGTTGGGTCTGATTTTATTCGGAATTCCAAAATCTCAAATATTGATTTCACCTCTGTTCATATCTATG GTGACCAATGGTCTTACAAGCAAGAATTTGAAGATCAACTGAAATTTGTCTCCAAGTGGATGCTTTCCCACATTGAAGAT GGTGATGAAGTATTGCATAAACCTGTCTTGTTCTCTGAATATGGATTGTCACAAAGAATCCAGAACTTTTCCGCGTCTGA CCGAGAGAAGATACACAAAACTATTCTAGACATAATTTACAAATCTGCCAAAAGAAACAAATCTGGAGCAGGTACTCTGA TTTGGCAATTCTTGGTTGATGGAATCAATGAGTTTTCTGATGAATATGGGATTGTGCCAGGGGGAAATTCATCAACTTAT TCACTGTTAGTTGAACAGTCATGCAGATTGGCCAAAGTTAAGGGATGGCCACAACAGGATGTAAAATTCAAACAAGTTTG TTAA
Protein sequence (LotjaGi3g1v0444900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVRNGMLYHILGLLSVLAFVYMSFGGLRFRFEEGSEVAFVQRNGTQFVVDGKAFYVNGWNSYWLMFQSVDVDSRHRVRE MLKTGAKMGLTVCRTWGFNDGGYHALQTSPGRFDEQAFKALDYVIAEAGQQGIRLLLSLVNNLEGLGGKPQYVKWAWQDG VGLSSSDDSFFFDPSIRSYFKNYIKTILTRKNTITGIEYRNDPTVFGWELINEPRCMSDPSGDTLQEWIEEMSAFVKLID KNHLVTVGLEGFYGPHDPKSSTVNPGYWASQVGSDFIRNSKISNIDFTSVHIYGDQWSYKQEFEDQLKFVSKWMLSHIED GDEVLHKPVLFSEYGLSQRIQNFSASDREKIHKTILDIIYKSAKRNKSGAGTLIWQFLVDGINEFSDEYGIVPGGNSSTY SLLVEQSCRLAKVKGWPQQDVKFKQVC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 427 | 427 | 8.6E-250 | – | |
Phobius | 1 | 5 | 5 | - | – | |
PANTHER | 1 | 427 | 427 | 8.6E-250 | – | |
Phobius | 6 | 25 | 20 | - | – | |
TMHMM | 7 | 26 | 20 | - | – | |
Phobius | 26 | 427 | 402 | - | – | |
Gene3D | 37 | 414 | 378 | 1.1E-135 | – | |
SUPERFAMILY | 40 | 403 | 364 | 2.15E-74 | ||
Pfam | 77 | 376 | 300 | 2.6E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0444900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…