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LotjaGi3g1v0475300.3

Overview

Field Value
Gene ID LotjaGi3g1v0475300
Transcript ID LotjaGi3g1v0475300.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Vesicle-associated membrane protein, putative; TAIR: AT5G22360.1 vesicle-associated membrane protein 714; Swiss-Prot: sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714; TrEMBL-Plants: tr|B7FI29|B7FI29_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi3g1v0475300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:89205202..89206444) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGGTTTATGAAGAACTACGGTAGAGTTGCCAATTATTCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTT GCATCAGCAAATGGAATTTTTCTCTAGTAATCCTAGTGTTGATGCCCTAAATCGTGTGAGGGGTGAAGTTAGTGAGGCAA GTACATTTCAAAGAAAAATTTGTCCATCTTATGTGTTCTTTTCATTTTATTTATCTAGTACATAGTGAGAACTGAGAACA GAACACCACATAAGCTAATCAAGTTTCATATAATATATGTGAAATTGTGCTCTGGTTTATTTAATATCCAACTCTGTTTT CTGTTGATGAATTTCCCTTCTTCCTAGGTATGGGCTGCAAGTGACAGACAACTCTGCTTAACATATAATCTTGTTTACAT AACGACAACAATCCATCTAATTTTGGAACCAAAAAAGAACACAATTGTAATAGTGCGATCACAATAATTTTGTTGTTTCC CCCATTTTTACCTTCAGCAGAAATGAGTGTTTGTTATATGTAGGATTTATCTTTTTAAAAGTTGGTAAGCTGAACAGAAG TGGTATACCTCTTTACTTGAATTGTTTCAGTGCCTCTCTATTCTCTAATGAGTGATGTTGATGACCCAGAGTCCTTATTA GTGAAGTTATTTATCTTTCTTTCTGGAAATCATTAATATTGACTCTTTGCAACATGATTTTGAAGAGTGTCGTATTGGAT TTCAAGTTGTATAGATTCTGTTAATGTTACATTATCATGCTATGACTATTTAAATCCTTTCACTTAGTTGGTGACATTAG AACTTTCAATCTGTCATACAGATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGA GCTTCTCGTTGATAAGACAGCAACAATGCAAGACAATTCATTTCACTTTAGGAAACAGTCAAAGCGCCTTCGAAGAGCGC TATGGATGAAAAATTTCAAGCTCCTGTGAGTAAATTTTCTTTGATATGCTGAATATAAATAATATATATTTCAAAAGTAT TCATTTTAGATATGGGGTACCTGAAGTTGTTTATATTTATCTTGGAATGCAACAATGGGCTTATTGCTCTTCTATCCTTG TCTTGACTTGATGTTTTTTTGGTCTTTGACAGCGCATTATTGACATGCTTGATTGTTCTCATTCTTTACTTCATAATCGC TGCTTGTTGCGGAGGCATCACTCTACCATCCTGCAGATCCTAA 

CDS sequence (LotjaGi3g1v0475300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGTTTATGAAGAACTACGGTAGAGTTGCCAATTATTCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTT GCATCAGCAAATGGAATTTTTCTCTAGTAATCCTAGTGTTGATGCCCTAAATCGTGTGAGGGGTGAAATACGCACTATCA TGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTCGTTGATAAGACAGCAACAATGCAAGAC AATTCATTTCACTTTAGGAAACAGTCAAAGCGCCTTCGAAGAGCGCTATGGATGAAAAATTTCAAGCTCCTCGCATTATT GACATGCTTGATTGTTCTCATTCTTTACTTCATAATCGCTGCTTGTTGCGGAGGCATCACTCTACCATCCTGCAGATCCT AA 

Protein sequence (LotjaGi3g1v0475300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRFMKNYGRVANYSPAYAMNDEFSRVLHQQMEFFSSNPSVDALNRVRGEIRTIMVDNIEKILERGDRIELLVDKTATMQD NSFHFRKQSKRLRRALWMKNFKLLALLTCLIVLILYFIIAACCGGITLPSCRS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 102 102 -
Gene3D 1 39 39 3.8E-6
PANTHER 2 132 131 3.3E-50
PANTHER 2 132 131 3.3E-50
ProSiteProfiles 39 99 61 15.72
Gene3D 40 122 83 2.8E-23
SUPERFAMILY 40 101 62 9.42E-18
CDD 41 97 57 6.46326E-23
PRINTS 44 63 20 4.2E-10
Pfam 46 124 79 1.0E-27
ProSitePatterns 57 76 20 -
PRINTS 64 83 20 4.2E-10
PRINTS 100 119 20 4.2E-10
TMHMM 103 128 26 -
Phobius 103 128 26 -
Phobius 129 133 5 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0475300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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