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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR21136
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 46 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.039s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0249659.1
n.a. PREDICTED: probable VAMP-like protein At1g33475-like [Cicer arietinum] gi|502136366|ref|XP_004502660.1| chr0 129415540 129416413 -
1 domain prediction
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Lj0g3v0321629.1
n.a. PREDICTED: vesicle-associated membrane protein 725-like [Glycine max] gi|356567876|ref|XP_003552141.1| chr0 167935440 167938913 -
1 domain prediction
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Lj1g3v3478250.1
n.a. Vesicle-associated membrane protein [Medicago truncatula] gi|357505361|ref|XP_003622969.1| chr1 40403964 40407058 -
1 domain prediction
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Lj2g3v3022900.1
n.a. PREDICTED: vesicle-associated membrane protein 711-like [Cicer arietinum] gi|502098408|ref|XP_004491228.1| chr2 39084748 39087773 +
1 domain prediction
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Lj3g3v1789090.1
n.a. PREDICTED: probable VAMP-like protein At1g33475-like [Cicer arietinum] gi|502136366|ref|XP_004502660.1| chr3 22790227 22790862 -
1 domain prediction
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Lj3g3v1953410.1
n.a. PREDICTED: probable VAMP-like protein At1g33475-like [Glycine max] gi|356517810|ref|XP_003527579.1| chr3 25107968 25109748 -
1 domain prediction
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Lj3g3v2576210.1
n.a. PREDICTED: 25.3 kDa vesicle transport protein-like isoform X1 [Cicer arietinum] gi|502156568|ref|XP_004510539.1| chr3 31614385 31619854 +
1 domain prediction
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Lj3g3v2990300.1
n.a. PREDICTED: vesicle-associated membrane protein 714-like [Cicer arietinum] gi|502145830|ref|XP_004506198.1| chr3 37014107 37017690 -
1 domain prediction
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Lj4g3v0667970.1
n.a. Vesicle-associated membrane protein [Medicago truncatula] gi|357475115|ref|XP_003607843.1| chr4 10817768 10821376 +
1 domain prediction
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Lj4g3v1881960.1
n.a. PREDICTED: vesicle-associated membrane protein 713-like [Cicer arietinum] gi|502151469|ref|XP_004508456.1| chr4 26763532 26765982 +
1 domain prediction
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Lj4g3v2336850.1
n.a. PREDICTED: vesicle-associated membrane protein 724-like [Cicer arietinum] gi|502085197|ref|XP_004487861.1| chr4 32373309 32373832 +
1 domain prediction
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Lj4g3v2336870.1
n.a. PREDICTED: vesicle-associated membrane protein 724-like [Cicer arietinum] gi|502085197|ref|XP_004487861.1| chr4 32375410 32377846 +
1 domain prediction
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Lj5g3v2237620.1
n.a. PREDICTED: vesicle-associated membrane protein 727-like [Glycine max] gi|356575504|ref|XP_003555880.1| chr5 32098508 32101962 +
1 domain prediction
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Lj6g3v0132830.1
n.a. vesicle-associated membrane protein 7B [Arabidopsis lyrata subsp]. lyrata] gi|297843284|ref|XP_002889523.1| chr6 1472697 1475069 -
1 domain prediction
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Lj6g3v1078510.1
n.a. fiber NTGP1-related protein [Gossypium barbadense] gi|35187452|gb|AAQ84317.1| chr6 12903509 12907613 +
1 domain prediction
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Lj6g3v1444530.1
n.a. PREDICTED: vesicle-associated membrane protein 724-like [Cicer arietinum] gi|502085197|ref|XP_004487861.1| chr6 16989308 16991458 -
1 domain prediction
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Lj6g3v1692680.1
n.a. Vesicle-associated membrane protein [Medicago truncatula] gi|357448351|ref|XP_003594451.1| chr6 18919415 18923325 -
1 domain prediction
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LotjaGi1g1v0050900.1
n.a. Vesicle-associated membrane protein; TAIR: AT5G11150.1 vesicle-associated membrane protein 713; Swiss-Prot: sp|Q9LFP1|VA713_ARATH Vesicle-associated membrane protein 713; TrEMBL-Plants: tr|I3S1N5|I3S1N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0050900 LjG1.1_chr1 7249054 7252617 -
1 domain prediction
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LotjaGi1g1v0050900.2
n.a. Vesicle-associated membrane protein; TAIR: AT4G32150.1 vesicle-associated membrane protein 711; Swiss-Prot: sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711; TrEMBL-Plants: tr|I3S1N5|I3S1N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0050900 LjG1.1_chr1 7251399 7252404 -
1 domain prediction
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LotjaGi1g1v0585300.1
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|A0A067J992|A0A067J992_JATCU Uncharacterized protein; Found in the gene: LotjaGi1g1v0585300 LjG1.1_chr1 112465849 112468570 -
1 domain prediction
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LotjaGi1g1v0585300.2
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|W9S386|W9S386_9ROSA Putative vesicle-associated membrane protein 726; Found in the gene: LotjaGi1g1v0585300 LjG1.1_chr1 112466191 112468312 -
1 domain prediction
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LotjaGi1g1v0585500.1
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|A0A151RCJ5|A0A151RCJ5_CAJCA Putative vesicle-associated membrane protein 726 family; Found in the gene: LotjaGi1g1v0585500 LjG1.1_chr1 112495895 112499545 -
1 domain prediction
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LotjaGi3g1v0232700.1
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|I3SKD7|I3SKD7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0232700 LjG1.1_chr3 36710036 36716702 -
1 domain prediction
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LotjaGi3g1v0475300.1
n.a. Vesicle-associated membrane protein, putative; TAIR: AT5G22360.1 vesicle-associated membrane protein 714; Swiss-Prot: sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714; TrEMBL-Plants: tr|V7AFW3|V7AFW3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0475300 LjG1.1_chr3 89204846 89208590 -
1 domain prediction
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LotjaGi3g1v0475300.2
n.a. Vesicle-associated membrane protein, putative; TAIR: AT5G22360.1 vesicle-associated membrane protein 714; Swiss-Prot: sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714; TrEMBL-Plants: tr|B7FI29|B7FI29_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi3g1v0475300 LjG1.1_chr3 89205202 89205611 -
1 domain prediction
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LotjaGi3g1v0475300.3
n.a. Vesicle-associated membrane protein, putative; TAIR: AT5G22360.1 vesicle-associated membrane protein 714; Swiss-Prot: sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714; TrEMBL-Plants: tr|B7FI29|B7FI29_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi3g1v0475300 LjG1.1_chr3 89205202 89206444 -
1 domain prediction
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LotjaGi3g1v0475300.4
n.a. Vesicle-associated membrane protein, putative; TAIR: AT5G22360.1 vesicle-associated membrane protein 714; Swiss-Prot: sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714; TrEMBL-Plants: tr|V7AFW3|V7AFW3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0475300 LjG1.1_chr3 89205202 89208313 -
1 domain prediction
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LotjaGi4g1v0085100.1
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|B7FGH4|B7FGH4_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi4g1v0085100 LjG1.1_chr4 11216901 11221671 +
1 domain prediction
 –
LotjaGi4g1v0085100.2
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|B7FGH4|B7FGH4_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi4g1v0085100 LjG1.1_chr4 11217131 11218096 +
1 domain prediction
 –
LotjaGi4g1v0085100.3
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|B7FGH4|B7FGH4_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi4g1v0085100 LjG1.1_chr4 11217131 11221051 +
1 domain prediction
 –
LotjaGi4g1v0085100.4
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|B7FGH4|B7FGH4_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi4g1v0085100 LjG1.1_chr4 11217137 11220436 +
1 domain prediction
 –
LotjaGi4g1v0085100.5
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|B7FGH4|B7FGH4_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi4g1v0085100 LjG1.1_chr4 11217137 11220939 +
1 domain prediction
 –
LotjaGi4g1v0275600.1
n.a. Vesicle-associated membrane protein, putative; TAIR: AT4G32150.1 vesicle-associated membrane protein 711; Swiss-Prot: sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711; TrEMBL-Plants: tr|I3T6Y7|I3T6Y7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0275600 LjG1.1_chr4 64604591 64607566 +
1 domain prediction
 –
LotjaGi4g1v0275600.2
n.a. Vesicle-associated membrane protein; TAIR: AT5G11150.1 vesicle-associated membrane protein 713; Swiss-Prot: sp|Q9LFP1|VA713_ARATH Vesicle-associated membrane protein 713; TrEMBL-Plants: tr|I3T6Y7|I3T6Y7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0275600 LjG1.1_chr4 64604608 64609746 +
1 domain prediction
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LotjaGi4g1v0342200.1
n.a. Vesicle-associated membrane protein; TAIR: AT4G15780.1 vesicle-associated membrane protein 724; Swiss-Prot: sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724; TrEMBL-Plants: tr|A0A151STH9|A0A151STH9_CAJCA Vesicle-associated membrane protein 724 family; Found in the gene: LotjaGi4g1v0342200 LjG1.1_chr4 72186561 72190206 +
1 domain prediction
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LotjaGi4g1v0342200.2
n.a. Vesicle-associated membrane protein; TAIR: AT4G15780.1 vesicle-associated membrane protein 724; Swiss-Prot: sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724; TrEMBL-Plants: tr|I3SDA5|I3SDA5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0342200 LjG1.1_chr4 72186765 72189639 +
1 domain prediction
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LotjaGi5g1v0343800.1
n.a. Vesicle-associated membrane protein, putative; TAIR: AT3G54300.1 vesicle-associated membrane protein 727; Swiss-Prot: sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727; TrEMBL-Plants: tr|I1LF04|I1LF04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0343800 LjG1.1_chr5 66088108 66092744 +
1 domain prediction
 –
LotjaGi5g1v0343800.2
n.a. Vesicle-associated membrane protein, putative; TAIR: AT3G54300.1 vesicle-associated membrane protein 727; Swiss-Prot: sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727; TrEMBL-Plants: tr|I1LF04|I1LF04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0343800 LjG1.1_chr5 66088753 66091796 +
1 domain prediction
 –
LotjaGi5g1v0343800.3
n.a. Vesicle-associated membrane protein, putative; TAIR: AT3G54300.1 vesicle-associated membrane protein 727; Swiss-Prot: sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727; TrEMBL-Plants: tr|A0A1J7GS43|A0A1J7GS43_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0343800 LjG1.1_chr5 66088753 66091898 +
1 domain prediction
 –
LotjaGi6g1v0014900.1
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|I1NEG8|I1NEG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0014900 LjG1.1_chr6 2686012 2688811 -
1 domain prediction
 –
LotjaGi6g1v0014900.2
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|I1NEG8|I1NEG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0014900 LjG1.1_chr6 2686325 2688841 -
1 domain prediction
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LotjaGi6g1v0248900.1
n.a. Vesicle-associated membrane protein, putative; TAIR: AT4G15780.1 vesicle-associated membrane protein 724; Swiss-Prot: sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724; TrEMBL-Plants: tr|I3SDA5|I3SDA5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0248900 LjG1.1_chr6 56111748 56114879 -
1 domain prediction
 –
LotjaGi6g1v0248900.2
n.a. Vesicle-associated membrane protein; TAIR: AT4G15780.1 vesicle-associated membrane protein 724; Swiss-Prot: sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724; TrEMBL-Plants: tr|I3SDA5|I3SDA5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0248900 LjG1.1_chr6 56112399 56114428 -
1 domain prediction
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LotjaGi6g1v0276400.1
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|I3S869|I3S869_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0276400 LjG1.1_chr6 59342431 59347307 -
1 domain prediction
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LotjaGi6g1v0276400.2
n.a. Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|I3S869|I3S869_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0276400 LjG1.1_chr6 59343455 59347015 -
1 domain prediction
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LotjaGi6g1v0276400.3
n.a. Vesicle-associated membrane protein, putative; TAIR: AT2G33120.2 synaptobrevin-related protein 1; Swiss-Prot: sp|P47192|VA722_ARATH Vesicle-associated membrane protein 722; TrEMBL-Plants: tr|I3S869|I3S869_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0276400 LjG1.1_chr6 59343946 59347021 -
1 domain prediction
 –