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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0507700 |
| Transcript ID | LotjaGi3g1v0507700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Guanine nucleotide-binding protein beta subunit-like protein; TAIR: AT4G34460.1 GTP binding protein beta 1; Swiss-Prot: sp|P93397|GBB1_TOBAC Guanine nucleotide-binding protein subunit beta-1; TrEMBL-Plants: tr|I1LJE1|I1LJE1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0507700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92473057..92475872) extracted from Lotus japonicus Gifu genome v1.2.
AATTCACTGTCACTGAGCTGAAATGTCTGTTACGGAGCTCAAGGAGTGTCACTCAGCTACCACCGACACTGTCAACAATC TCAGGGACCGGTTGAAGCAGAAACGCCTTTCTTTGCTTGATACTGATAGTAAAGTTTTCAATTTTTTTTTCTTTTCAGAA AATGCTATTTTTGTGATTGAAGTTTAAGTCTTGTTCATGTAGTTGGTTTTAGATCTAGTTGAGCTCACTGTTTGATGGGA ATTTTTCAGTTTCTGGGTATGCTCGGTCTCAGGGTAGAACTCCTGTGAGCTTTGGACCCACGGATCTAGTTTGCTGTAGA ACTTTACAGGGTCATACTGGAAAGGTACTCTTTCTTATCTTTACCCCCTTTCATTTGTAAAATGCAATGTGGAGCTTGTT ACAATTTCACTGATCACTTATCTATTAGTAAGTAGTCAAAAGATTATGGAAACCACTATATAACTTATGAAACCATTCCT AGGTGTTGTGTTTCCAATTCTAAATGATAGCTGCAATAGTGTTATTGATATTGGTGATTGGTCCATATGAAATCTAGTTG ATGTGAATGTTGAAATTGGACATTTTTTTGTGAGATAGGCTTACTAGTTGCTACCTGGTTGAATGCAAATCAAAGAGCAT TTATTGGAGTTTATTTAGTGCATTTTTTAGTAGATAAGCTCCAATAAGCTCTAATAAGCCCCTATCCAAACGGGCTCCAT ATTGTTATCATATACAGCAGTCGTGCTTTTGATTTACTTTGTGATATGGACAGTCTTCGTTGTGTGACTTGTAGGTTTCT AACCATCAAATTTGCAGATTTAGGTTAACTTGATAGTCATTCCAACTATGCAGGTGTATTCATTGGATTGGACTTCTGAG AGGAATCAGATTGTTAGTGCGTCCCAGGATGGCCGGTTAATAGTGTGGAATGCTCTAACAAGGCAGAAAATTCATGCCAT AAAGCTGCCTTGTGCATGGGTCATGAGCTGTGCTTTCTCGCCAACTGGTCAGTCTGTTGCGTGCGGTGGTCTTGACAGTG TGTGCTCTATTTTCAATCTTAGTTCCCCCACTGATAAGGATGGAAATGTACCTGTTACCCGGATGCTTAGCGGACATAAA GGTTATGTTTCCTCTTGTCAGTATGTTCCAGATGAAGCCGCTCACTTAATCACTGGTTCTGGTGACCAGACATGTGTTTT ATGGGATGTTACCACTGGTCTTAAAACATCTGTCTTTGGAGGTGAATTTCAGTCTGGCCATGCTGCAGATGTTCTTAGGT ATTAATTGATTGCTGAATTATTTTGAGCCAATATGTTGTTTGAGCAAATTACCATCCCCTCTTCTGTAGTATTTTGTGTT TGCCTAGGTCCACTCTATTATGAAAACCTACCAAAAAAAAAAAAAGAGGAAGCAAACTCCTGCATCTAAACGAAAAACAT TACAGCTAACTCTAAAATGCTGTCAGGTCTAGAGGAACTGTTAGATGTTCTGTGATCAAACTAAAATATGATTGCTCAGC CTTACAGTTGAGAAATAGGCAAGAGCACATTCATTTGGTGGTGCAAGTCAATTGAGTATATGTCTTAGTTTTGAAGCCAT TCGATTAAAGATTCATCTACGGTGAATCAAGATGCTCTTATCTTTTCTCAATACACAGGCATGAAAAAGGGTAGAAACTA GGAATGGCATTATACCAAAAGACATTAGTGAGATATCTCAGTTAAAGAATGTGTTAGGCATTGTAGCATATTGGATTTAG TTTCAGTTTCAGCATCTTTATGGATACAATGGAGTTATGTGCTGGTTTTGATAATAGAGAAGATGTCTGGTATAGTTGTA GTCTTGTAGATGCAAAATACAAAGGGATATTAACTTACTCTTGTTGCTGTTAATCTGTTGAATAAACTAGTCTGCAAAAG AATGGCTACTCCAGCTTCAAAATGCAAAGCATCTGCATAAATTAATTTTTTTACTTCTACATGCATATTGATAAAGTTAT GAGTCTTGTTGGTGATCAATTTCTGCATAAGTAACATGTTTTATTTCCATATAAATTTGTCAGTACTGAAGCCTTTCTTT GAAATATCTTATACTTTGTCATCTCAGCATCTCCATTAATGGGTCCAACTCAAGAATGTTTGCATCTGGTTCTTGTGATG CAACTGCTCGATTGTGGGATACTCGCGTGGCAAGTCGAGCGGTGCGGACATTTCATGGGCATGAGGGAGATGTTAATGCC ATCAAGTTCTTCCCAGATGGAAATAGATTTGGAACTGGCTCAGAAGATGGAACTTGCAGATTGTTTGACATTAGGACTGG ACACCAACTTCAAGTGTATTATCAGCAACACGGTGACGACATCCCACCTGTGACCTCAATTGCATTCTCCATATCAGGAA GACTTCTTTTTGCTGGATATGCAAATGGAGATTGCTATGTTTGGGACACTTTATTGGCAAAGGTACTTGGGTGCTTTAGT GATACATATGACTGCTGAAGATTGCTTTCGTTCTGGTCACACCTTGACTAAAGCTGGCTAGCTTTCTAAAAGAACATTTG CTTGCTTACTTTTTTTTTTGCAGGTGGTCTTGAATATAGGATCTCTCCAAGACTCTCATGAGGGCAGGATCAGCTGTTTA GGTTTGTCAGCTGATGGAAGCGCCTTGTGTACAGGAGGTTGGGACACAAACCTGAAGGTGAGCATGCATTTTGGCCTTAT TGAATAATTTTGGGTTATCTGATACACAATAGGGTGCTGTCTTATTTTATTGCTGACTAGATTATAGAATGAAAAACACT AAAGCAACTGAACTGA
CDS sequence (LotjaGi3g1v0507700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTTACGGAGCTCAAGGAGTGTCACTCAGCTACCACCGACACTGTCAACAATCTCAGGGACCGGTTGAAGCAGAA ACGCCTTTCTTTGCTTGATACTGATATTTCTGGGTATGCTCGGTCTCAGGGTAGAACTCCTGTGAGCTTTGGACCCACGG ATCTAGTTTGCTGTAGAACTTTACAGGGTCATACTGGAAAGGTGTATTCATTGGATTGGACTTCTGAGAGGAATCAGATT GTTAGTGCGTCCCAGGATGGCCGGTTAATAGTGTGGAATGCTCTAACAAGGCAGAAAATTCATGCCATAAAGCTGCCTTG TGCATGGGTCATGAGCTGTGCTTTCTCGCCAACTGGTCAGTCTGTTGCGTGCGGTGGTCTTGACAGTGTGTGCTCTATTT TCAATCTTAGTTCCCCCACTGATAAGGATGGAAATGTACCTGTTACCCGGATGCTTAGCGGACATAAAGGTTATGTTTCC TCTTGTCAGTATGTTCCAGATGAAGCCGCTCACTTAATCACTGGTTCTGGTGACCAGACATGTGTTTTATGGGATGTTAC CACTGGTCTTAAAACATCTGTCTTTGGAGGTGAATTTCAGTCTGGCCATGCTGCAGATGTTCTTAGCATCTCCATTAATG GGTCCAACTCAAGAATGTTTGCATCTGGTTCTTGTGATGCAACTGCTCGATTGTGGGATACTCGCGTGGCAAGTCGAGCG GTGCGGACATTTCATGGGCATGAGGGAGATGTTAATGCCATCAAGTTCTTCCCAGATGGAAATAGATTTGGAACTGGCTC AGAAGATGGAACTTGCAGATTGTTTGACATTAGGACTGGACACCAACTTCAAGTGTATTATCAGCAACACGGTGACGACA TCCCACCTGTGACCTCAATTGCATTCTCCATATCAGGAAGACTTCTTTTTGCTGGATATGCAAATGGAGATTGCTATGTT TGGGACACTTTATTGGCAAAGGTGGTCTTGAATATAGGATCTCTCCAAGACTCTCATGAGGGCAGGATCAGCTGTTTAGG TTTGTCAGCTGATGGAAGCGCCTTGTGTACAGGAGGTTGGGACACAAACCTGAAGATTATAGAATGA
Protein sequence (LotjaGi3g1v0507700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVTELKECHSATTDTVNNLRDRLKQKRLSLLDTDISGYARSQGRTPVSFGPTDLVCCRTLQGHTGKVYSLDWTSERNQI VSASQDGRLIVWNALTRQKIHAIKLPCAWVMSCAFSPTGQSVACGGLDSVCSIFNLSSPTDKDGNVPVTRMLSGHKGYVS SCQYVPDEAAHLITGSGDQTCVLWDVTTGLKTSVFGGEFQSGHAADVLSISINGSNSRMFASGSCDATARLWDTRVASRA VRTFHGHEGDVNAIKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYYQQHGDDIPPVTSIAFSISGRLLFAGYANGDCYV WDTLLAKVVLNIGSLQDSHEGRISCLGLSADGSALCTGGWDTNLKIIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 368 | 368 | 4.8E-132 | – | |
| PANTHER | 2 | 366 | 365 | 3.8E-154 | ||
| PANTHER | 2 | 366 | 365 | 3.8E-154 | – | |
| Gene3D | 9 | 367 | 359 | 6.2E-99 | ||
| SUPERFAMILY | 54 | 366 | 313 | 2.08E-69 | ||
| SMART | 54 | 93 | 40 | 3.1E-9 | ||
| Pfam | 57 | 93 | 37 | 9.5E-5 | ||
| CDD | 57 | 366 | 310 | 1.05347E-74 | – | |
| PRINTS | 61 | 77 | 17 | 3.0E-27 | ||
| ProSiteProfiles | 61 | 368 | 308 | 46.508 | ||
| ProSiteProfiles | 61 | 102 | 42 | 14.385 | ||
| PRINTS | 80 | 94 | 15 | 3.0E-27 | ||
| PRINTS | 80 | 94 | 15 | 2.1E-7 | ||
| ProSitePatterns | 80 | 94 | 15 | - | ||
| SMART | 96 | 135 | 40 | 3.7E-4 | ||
| PRINTS | 99 | 114 | 16 | 3.0E-27 | ||
| Pfam | 109 | 135 | 27 | 0.23 | ||
| PRINTS | 117 | 134 | 18 | 3.0E-27 | ||
| SMART | 145 | 185 | 41 | 1.3E-6 | ||
| Pfam | 150 | 185 | 36 | 7.2E-4 | ||
| ProSiteProfiles | 152 | 194 | 43 | 12.413 | ||
| ProSitePatterns | 172 | 186 | 15 | - | ||
| PRINTS | 172 | 186 | 15 | 2.1E-7 | ||
| SMART | 192 | 233 | 42 | 3.1E-5 | ||
| ProSiteProfiles | 200 | 242 | 43 | 11.478 | ||
| Pfam | 201 | 233 | 33 | 0.019 | ||
| PRINTS | 220 | 234 | 15 | 2.1E-7 | ||
| SMART | 237 | 276 | 40 | 4.7E-10 | ||
| Pfam | 241 | 276 | 36 | 6.5E-7 | ||
| ProSiteProfiles | 244 | 285 | 42 | 13.884 | ||
| SMART | 279 | 322 | 44 | 0.0059 | ||
| Pfam | 287 | 322 | 36 | 0.0012 | ||
| ProSitePatterns | 309 | 323 | 15 | - | ||
| SMART | 328 | 368 | 41 | 0.43 | ||
| ProSiteProfiles | 336 | 368 | 33 | 8.904 | ||
| Pfam | 338 | 366 | 29 | 0.26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi3g1v0507700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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