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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0521200 |
Transcript ID | LotjaGi3g1v0521200.6 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Calcium lipid binding protein, putative; TAIR: AT1G20080.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|B6ETT4|SYT2_ARATH Synaptotagmin-2; TrEMBL-Plants: tr|I1LPS0|I1LPS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93778673..93779926) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTGTTACTCTTGACCTCCGAAAAACTTT GGATCCCAATGATGTTCAAAATGAGAAGTCACGAGGGCAGATTGTTGTGGAATTGACTTATAAACCTTTCAAGGAGGAGG AGCTGGGCAGGGGATTTGATGAGACACAGACAGTGCCGAAAGCACCAGAAGGTACTCCAGCTGGTGGAGGTCAGCTTGTA ATAATAGTCCATGAAGCACAAGATGTTGAAGGGAAGTACCACACTAATCCACATGTCCGTCTTATTTACAGAGGAGATGA GAAAAAGTCTAAGGTACATGATCCCCAGAAATACTTACGTTCTACTTTTTATTCTTTCTAGAATATATGGAATGAATAAA ATTGCAGGTTTCTTAATCTTTCCCCCCTGAAAAACTAGGGGAAAACCTCTTGACTCCACTAATGTCATTTGATCCATGTG GTTGAATTTGGTTTTTGTTGCTGTATTAATCTTCCAAAAAAACACATTGGGATGTAGATGTAGATGCAGATGTTGGGAGA CAATTATGGATTGGGGTGTTAGTCGTGTAAGTATACATTGACTTGTTTTTTTACAGAATGGTAATGATTCTTTGGTTACT ATTACAGCGCATAAAAAAGAACAGGGATCCAAGATGGGAAGAGGAGTTCAAATTTATGGCGGAGGAGCCTCCCACCAATG ACAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCATCAGAAGGTACATAATTCATGACAACTTTAC CATTCTTATTATTAATATGATTATACTTCATAGAAACAAAAACCTAAAACCTTTTCAGAGTTTGTTTCATGTCATCTACA ACAGTAAAAGTTAGATCAGGAATCCTCAAATTATTGAAAAGAGTTAAAGTTACTTATGGAATGTGCACAAATATTTTATG ATTCAAAATCCAAATGTAAAATAGTAGGCTCTATCATACACCAGCCCTTTAACTCTGGTTAATATCATGAGCAATTGACA CTTATTCTTCAAATTAAAGCAATTTGCCCACAACATGCTATGATTGAGTTTTATTGTTTTTTGCTGTTCCTTTCGGCATT AGGAATCATTGGGTTATGTCGACATCAATCTTGGGGATGTTGTTTCTAACAAAAGGATCAATGAGAAGTACCATCTTATA GACTCCAAGAATGGTCGCATTCAGATAGAGTTGCAGTGGAGAACTTCTTCATAG
CDS sequence (LotjaGi3g1v0521200.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTGTTACTCTTGACCTCCGAAAAACTTT GGATCCCAATGATGTTCAAAATGAGAAGTCACGAGGGCAGATTGTTGTGGAATTGACTTATAAACCTTTCAAGGAGGAGG AGCTGGGCAGGGGATTTGATGAGACACAGACAGTGCCGAAAGCACCAGAAGGTACTCCAGCTGGTGGAGGTCAGCTTGTA ATAATAGTCCATGAAGCACAAGATGTTGAAGGGAAGTACCACACTAATCCACATGTCCGTCTTATTTACAGAGGAGATGA GAAAAAGTCTAAGCGCATAAAAAAGAACAGGGATCCAAGATGGGAAGAGGAGTTCAAATTTATGGCGGAGGAGCCTCCCA CCAATGACAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCATCAGAAGGAATCATTGGGTTATGTC GACATCAATCTTGGGGATGTTGTTTCTAACAAAAGGATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCAT TCAGATAGAGTTGCAGTGGAGAACTTCTTCATAG
Protein sequence (LotjaGi3g1v0521200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGMNVIPLKEVSPEEPKRVTLDLRKTLDPNDVQNEKSRGQIVVELTYKPFKEEELGRGFDETQTVPKAPEGTPAGGGQLV IIVHEAQDVEGKYHTNPHVRLIYRGDEKKSKRIKKNRDPRWEEEFKFMAEEPPTNDRLHVEVVSTSSRNLLHQKESLGYV DINLGDVVSNKRINEKYHLIDSKNGRIQIELQWRTSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 196 | 196 | 4.2E-112 | – | |
PANTHER | 1 | 196 | 196 | 4.2E-112 | – | |
SUPERFAMILY | 76 | 194 | 119 | 3.87E-19 | – | |
Pfam | 77 | 179 | 103 | 1.5E-13 | ||
Gene3D | 77 | 196 | 120 | 3.5E-23 | ||
ProSiteProfiles | 78 | 161 | 84 | 9.45 | ||
SMART | 78 | 176 | 99 | 9.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0521200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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