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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0521200 |
| Transcript ID | LotjaGi3g1v0521200.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Synaptotagmin-1; TAIR: AT2G20990.1 synaptotagmin A; Swiss-Prot: sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1; TrEMBL-Plants: tr|K7LST9|K7LST9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93774903..93779926) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGCCTTATCTTGACAAGGTGTGTGGTTTTTATGTGATTTGATTTTGACCCTTTTTCCAAATTGTCGTTGCTCCTTG TTTGATTTTTTTTTTTTCTGAATATATGTTATTTTTTGAACTCTTGTTTAGGCAATTTGTAAGACTGCCAAGAACATTGC AAAACCCATAATTGCTGAGCAGATTCCTAAATATAAAATTGATTCTGTTGAGTTTGAGACGCTCACTTTGGGATCCCTGC CGCCAACTTTTCAAGGTTAGTAGAGATCTATTCATTATTGTGTGAGGAAGGACCTTTTAGCTGTGTGCAGAGGGAGTTGG GGTATTATTGTCCAATGTTTTGTAATCTGGGTTAGCTACTTGCACTGAGTTTCTATTTTGGTGAAGGGATAGTAGTTATC AGTATTCGTTGTTTATAGATAGATGATGCTAGTGCTTATTAGTTATTACTGCTAAATAAACAGCTGACTTAATGGTGTTA GAGAAAGATTAACTAGCATCCCCACAATAAGTACTGTTCAGTTCTCCCCTCAATGCTAGTTCTAGTAGCGTCTTCCTAAA TCACAATGTGGAAACCCAAACACAAATTACAAATACACTCAAACGTATGTTCGCTCCATAGCGATTAATTGTTGCCTCTC CGTTTAGTGCATGGCCTTTTTTGTCACGGGTTTTGTGAGTTTTCTCCTCTCTCAAGTTTGTATGAAACTGAGAGATTTAT CATGGTTGTTGTACTTTCCTTGAACTTGGACGGAGAAGTTGGAAGACGGTTTCTATTTAGAATTTGAAGAAAACTTGATG TGTTATACGATCCATTTTACATTAGAACCTCTTCTGGGTCTGGCTTGTTATTTGTGAGGCCGTTTTTGGAGTCTTAAAGA CTAATACAATCTCTACACGTCTTCTCAAATTGGGCTAATTTTGATTGCTATTTTATAGGAGTTACCTGTTTGTTATATCA TGAGTATTCTTGATACTTTTTGTTGACTACATATTCATAGGAATGAAAATTTATATGACTGATGAGAAGGAGCTAATTAT GGAGCCTTCTGTAAAATGGGCGGGAAATCCTAATATCACTGTTGCTGTTAAGGCATTTGGGTTGAAAGCAACCGTTCAGG TAACCTATTTTTTTTTGCATGCACATGTTACTAGAGAGAGGATATATAATTTCTGTTTTCTTTTCCTTTTCATGCTAAGA ACTCTGTATATTTTCAGATCATGGATTTGCAAGTTTTCCTTTTGCCCCGCATTACTTTGAAGCCTTTGGTTCCTAGCTTT CCTTGCTTTGCCAACATCAATGTCTCTCTCATGGAAAAGGTTTGTGATTGTCGGGCGTATTACTCCTTCCCCCTAGCTTG GCATCCCACTTAATATGCAATATTGTAAATTGTATAATTTATGAAATAATATTTTTTCTTCCCTTATGTTCTTCCTATAC ATATTGAGTAATTATTAGGACAGGTTTTATTCTGATTATCATTAATTATGATTCATGTATATTATCTATAAATATTAGAC CTCGTAATTTTCATATGATAGGTGAATAAAATTCTGATCACTCAGCTGTTAAGATGATATCATATTCATAACATATCTTT GATATGACATTAGACCCAAAATTGTGCCTTCAATGCGGACCCATAGCTAGCAGCCTTCGTTGGAATTAAAGTTGATAGAA GACTGGATGATAGGAAATTCAATCCTTAATGGGAAGTAGAATAAGCCTTTCATTCTGACCTAAAAAACACATCGCACTTA TATTTCAAATGGTACTTCGACCATAAGGTCTTGAAACTTGGAGTGTTTAGGATTAAAAAAAACTCATGAGATTCATTGGT GTTTAGACACTTAAAAGCCGAAAGGTGGCTTCCAAAATATTTCGAGAGGCTGTTGAAGATCAATCTCTGAGTTGTTGTCA ACAAGAAAATCATCTTATGATTTCCTCCCTTGTTAATAGTTTAACAACTTCAAATATAATTGCGATTGTGCATTTTTTTT TGGGCAGACTGCTTTCATATATAATTGATTTGTGATTTGTGATTGTTGGCATATTTTAGTCGATCTCCTGATGATGATAT ATGAAGTGAATAATGCCATTGTAAGATAACTCTGATGATGCTGAACTTCGAGCCTTTTTTACCCCTTAATCGTAATTAAT TTGTTACTTTCTCTTTTATTTTGAATGTATGAGGAAACGTTGGTACTGTATGGCCAATATTGATTTCCACTTGTAATCAT ATTAGGTATAATACTTATATTCTCTCTCTATCTCTTTGTTTTTGGTGTTTATTATTGTGCAGCCACATGTTGACTTTGGA CTAAAGCTTGTAGGGGCTGATCTTATGTCTATTCCTGGCGCCTACAGGATTGTTCAGGTAAAAAACCTATCTTTTTTATT GTTTTGTTTGCCTTCCTATCCTAATTTTTTGAGGCATAAAATTGCTGACTTTCATCTTCCACTCATTTTAAAGGGGGAGT GGTCACTTTCCTGCATAATAAATAATTTCCCGCTGTAGAAATTGTCCACTGTTTTCGCAGGAGGATCTTATTTTGAAATA TATAATATCTTAGTGAAGACGTTGATTTTTGTATGCACTGTTTTATGTATATCTTGTATCAAGCTGGTTTCTGTATGTGC ATGAAAGATAGAAATTCGATTGCCCAAGAAATAAGAACTGTTGTGTTTGTAATGATATGAACATGAAGAAATAAGAAATG TAATGTAGAAGTCTGAGGTTGAATGTTTTGTTGGCTTGTTAAGTGTTTCTTTCCAGGTCATTGAGAGTAAAGTTGTTGTG TCTTATAGAAGATGGCCAGTAGTGTCAGCTAGTTGTTACCCTTTTTGCCAGAAGCCATCTTTAGTTTGATCTGGACATTT TCTTCTCTTGTAAAGTTGAAATCTCATATTCAGGCTCTTGCTGTTTATACAAACAAAATTTGATTGGGTGTGTCTATTGA ATTGAAACTTGAAAGATTTTGATGGCTATTTTCAATGCCTTCCATTCTTTCGTCTGTACCATCTTTTTATGAAATTCTAT CATTTGGAAAACTGGTGATTACATTATGTTGCCCGTATATGGCATTCTCAGTCTGGAAGGTGTATTTCTGGTTTATGGTA TTATAGTAGCAAAACATTACCTTTTGTAACATATCTATATTTATGTTATTGTCATTAACTAGTGAATGTTTTGTTGAAGG TTTTATGGCTATGATACTAATTTATAGAGTGTTGTTTTCAGGACCTCATCAAAGATCAGGTTGCAAACATGTATCTATGG CCCAAAACCCTGGAAGTTCAAGTATTGGATCCAGTAAAGTATGTTTCTTCTTTACTCTAAAGTATATTTTCATAATATAA TGGTATATTACCTTTTAACTCATTTCTGTTTTTTCTTGTGAATGTTATTGGGAATCTTAGAGCTATGAGGAGGCCTGTTG GAATTTTACATGTAAAGGTTGTGCAAGCGATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAG CTGAAGCTTACTGAGGATAAGTTGCCATCGAAAAAGACTACTGTAAAGCACAAGAACTTAAATCCAGAATGGAATGAAGA ATTTAATATGGTAGTCAAAGATCCAGAGTCCCAGGTTTTACAGATTAATGTTTATGACTGGGAGCAGGTAAACTTCTTGA GCTGAAAGCTTTATCCTATAGTTTTTTCTTTTCGATATATGAACTGAACATTGTTTTTTTATCTTTTCTTAGGTTGGGAA GCATGACAAGATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTGTTACTCTTGACCTCC GAAAAACTTTGGATCCCAATGATGTTCAAAATGAGAAGTCACGAGGGCAGATTGTTGTGGAATTGACTTATAAACCTTTC AAGGAGGAGGAGCTGGGCAGGGGATTTGATGAGACACAGACAGTGCCGAAAGCACCAGAAGGTACTCCAGCTGGTGGAGG TCAGCTTGTAATAATAGTCCATGAAGCACAAGATGTTGAAGGGAAGTACCACACTAATCCACATGTCCGTCTTATTTACA GAGGAGATGAGAAAAAGTCTAAGGTACATGATCCCCAGAAATACTTACGTTCTACTTTTTATTCTTTCTAGAATATATGG AATGAATAAAATTGCAGGTTTCTTAATCTTTCCCCCCTGAAAAACTAGGGGAAAACCTCTTGACTCCACTAATGTCATTT GATCCATGTGGTTGAATTTGGTTTTTGTTGCTGTATTAATCTTCCAAAAAAACACATTGGGATGTAGATGTAGATGCAGA TGTTGGGAGACAATTATGGATTGGGGTGTTAGTCGTGTAAGTATACATTGACTTGTTTTTTTACAGAATGGTAATGATTC TTTGGTTACTATTACAGCGCATAAAAAAGAACAGGGATCCAAGATGGGAAGAGGAGTTCAAATTTATGGCGGAGGAGCCT CCCACCAATGACAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCATCAGAAGGTACATAATTCATG ACAACTTTACCATTCTTATTATTAATATGATTATACTTCATAGAAACAAAAACCTAAAACCTTTTCAGAGTTTGTTTCAT GTCATCTACAACAGTAAAAGTTAGATCAGGAATCCTCAAATTATTGAAAAGAGTTAAAGTTACTTATGGAATGTGCACAA ATATTTTATGATTCAAAATCCAAATGTAAAATAGTAGGCTCTATCATACACCAGCCCTTTAACTCTGGTTAATATCATGA GCAATTGACACTTATTCTTCAAATTAAAGCAATTTGCCCACAACATGCTATGATTGAGTTTTATTGTTTTTTGCTGTTCC TTTCGGCATTAGGAATCATTGGGTTATGTCGACATCAATCTTGGGGATGTTGTTTCTAACAAAAGGATCAATGAGAAGTA CCATCTTATAGACTCCAAGAATGGTCGCATTCAGATAGAGTTGCAGTGGAGAACTTCTTCATAG
CDS sequence (LotjaGi3g1v0521200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCCTTATCTTGACAAGGCAATTTGTAAGACTGCCAAGAACATTGCAAAACCCATAATTGCTGAGCAGATTCCTAA ATATAAAATTGATTCTGTTGAGTTTGAGACGCTCACTTTGGGATCCCTGCCGCCAACTTTTCAAGGAATGAAAATTTATA TGACTGATGAGAAGGAGCTAATTATGGAGCCTTCTGTAAAATGGGCGGGAAATCCTAATATCACTGTTGCTGTTAAGGCA TTTGGGTTGAAAGCAACCGTTCAGATCATGGATTTGCAAGTTTTCCTTTTGCCCCGCATTACTTTGAAGCCTTTGGTTCC TAGCTTTCCTTGCTTTGCCAACATCAATGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGACTAAAGCTTGTAGGGG CTGATCTTATGTCTATTCCTGGCGCCTACAGGATTGTTCAGGACCTCATCAAAGATCAGGTTGCAAACATGTATCTATGG CCCAAAACCCTGGAAGTTCAAGTATTGGATCCAGTAAAAGCTATGAGGAGGCCTGTTGGAATTTTACATGTAAAGGTTGT GCAAGCGATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTGAAGCTTACTGAGGATAAGT TGCCATCGAAAAAGACTACTGTAAAGCACAAGAACTTAAATCCAGAATGGAATGAAGAATTTAATATGGTAGTCAAAGAT CCAGAGTCCCAGGTTTTACAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCATGACAAGATGGGTATGAATGTGAT CCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTGTTACTCTTGACCTCCGAAAAACTTTGGATCCCAATGATGTTC AAAATGAGAAGTCACGAGGGCAGATTGTTGTGGAATTGACTTATAAACCTTTCAAGGAGGAGGAGCTGGGCAGGGGATTT GATGAGACACAGACAGTGCCGAAAGCACCAGAAGGTACTCCAGCTGGTGGAGGTCAGCTTGTAATAATAGTCCATGAAGC ACAAGATGTTGAAGGGAAGTACCACACTAATCCACATGTCCGTCTTATTTACAGAGGAGATGAGAAAAAGTCTAAGCGCA TAAAAAAGAACAGGGATCCAAGATGGGAAGAGGAGTTCAAATTTATGGCGGAGGAGCCTCCCACCAATGACAGATTACAT GTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCATCAGAAGGAATCATTGGGTTATGTCGACATCAATCTTGGGGA TGTTGTTTCTAACAAAAGGATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCATTCAGATAGAGTTGCAGT GGAGAACTTCTTCATAG
Protein sequence (LotjaGi3g1v0521200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKIYMTDEKELIMEPSVKWAGNPNITVAVKA FGLKATVQIMDLQVFLLPRITLKPLVPSFPCFANINVSLMEKPHVDFGLKLVGADLMSIPGAYRIVQDLIKDQVANMYLW PKTLEVQVLDPVKAMRRPVGILHVKVVQAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNMVVKD PESQVLQINVYDWEQVGKHDKMGMNVIPLKEVSPEEPKRVTLDLRKTLDPNDVQNEKSRGQIVVELTYKPFKEEELGRGF DETQTVPKAPEGTPAGGGQLVIIVHEAQDVEGKYHTNPHVRLIYRGDEKKSKRIKKNRDPRWEEEFKFMAEEPPTNDRLH VEVVSTSSRNLLHQKESLGYVDINLGDVVSNKRINEKYHLIDSKNGRIQIELQWRTSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 457 | 457 | 1.9E-285 | – | |
| ProSiteProfiles | 1 | 169 | 169 | 22.841 | ||
| Pfam | 1 | 167 | 167 | 1.0E-11 | ||
| PANTHER | 1 | 457 | 457 | 1.9E-285 | – | |
| Gene3D | 176 | 326 | 151 | 4.2E-35 | ||
| SUPERFAMILY | 177 | 313 | 137 | 3.72E-32 | – | |
| Pfam | 180 | 281 | 102 | 4.3E-24 | ||
| SMART | 181 | 281 | 101 | 1.5E-21 | ||
| CDD | 182 | 284 | 103 | 1.71473E-26 | – | |
| ProSiteProfiles | 182 | 266 | 85 | 16.924 | ||
| PRINTS | 197 | 209 | 13 | 1.6E-7 | ||
| PRINTS | 224 | 237 | 14 | 1.6E-7 | ||
| PRINTS | 246 | 254 | 9 | 1.6E-7 | ||
| SUPERFAMILY | 337 | 455 | 119 | 2.68E-18 | – | |
| Pfam | 338 | 440 | 103 | 8.6E-13 | ||
| Gene3D | 338 | 457 | 120 | 2.3E-22 | ||
| SMART | 339 | 437 | 99 | 9.0E-10 | ||
| ProSiteProfiles | 339 | 422 | 84 | 9.45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi3g1v0521200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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