Transcript — View — Lotus Base

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LotjaGi3g1v0521200.6

Overview

Field	Value
Gene ID	LotjaGi3g1v0521200
Transcript ID	LotjaGi3g1v0521200.6
Related isoforms 5	LotjaGi3g1v0521200.1 LotjaGi3g1v0521200.2 LotjaGi3g1v0521200.3 LotjaGi3g1v0521200.4 LotjaGi3g1v0521200.5
Lotus japonicus genome version	Gifu v1.2
Description	Calcium lipid binding protein, putative; TAIR: AT1G20080.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp\|B6ETT4\|SYT2_ARATH Synaptotagmin-2; TrEMBL-Plants: tr\|I1LPS0\|I1LPS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:93778673..93779926) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTGTTACTCTTGACCTCCGAAAAACTTT GGATCCCAATGATGTTCAAAATGAGAAGTCACGAGGGCAGATTGTTGTGGAATTGACTTATAAACCTTTCAAGGAGGAGG AGCTGGGCAGGGGATTTGATGAGACACAGACAGTGCCGAAAGCACCAGAAGGTACTCCAGCTGGTGGAGGTCAGCTTGTA ATAATAGTCCATGAAGCACAAGATGTTGAAGGGAAGTACCACACTAATCCACATGTCCGTCTTATTTACAGAGGAGATGA GAAAAAGTCTAAGGTACATGATCCCCAGAAATACTTACGTTCTACTTTTTATTCTTTCTAGAATATATGGAATGAATAAA ATTGCAGGTTTCTTAATCTTTCCCCCCTGAAAAACTAGGGGAAAACCTCTTGACTCCACTAATGTCATTTGATCCATGTG GTTGAATTTGGTTTTTGTTGCTGTATTAATCTTCCAAAAAAACACATTGGGATGTAGATGTAGATGCAGATGTTGGGAGA CAATTATGGATTGGGGTGTTAGTCGTGTAAGTATACATTGACTTGTTTTTTTACAGAATGGTAATGATTCTTTGGTTACT ATTACAGCGCATAAAAAAGAACAGGGATCCAAGATGGGAAGAGGAGTTCAAATTTATGGCGGAGGAGCCTCCCACCAATG ACAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCATCAGAAGGTACATAATTCATGACAACTTTAC CATTCTTATTATTAATATGATTATACTTCATAGAAACAAAAACCTAAAACCTTTTCAGAGTTTGTTTCATGTCATCTACA ACAGTAAAAGTTAGATCAGGAATCCTCAAATTATTGAAAAGAGTTAAAGTTACTTATGGAATGTGCACAAATATTTTATG ATTCAAAATCCAAATGTAAAATAGTAGGCTCTATCATACACCAGCCCTTTAACTCTGGTTAATATCATGAGCAATTGACA CTTATTCTTCAAATTAAAGCAATTTGCCCACAACATGCTATGATTGAGTTTTATTGTTTTTTGCTGTTCCTTTCGGCATT AGGAATCATTGGGTTATGTCGACATCAATCTTGGGGATGTTGTTTCTAACAAAAGGATCAATGAGAAGTACCATCTTATA GACTCCAAGAATGGTCGCATTCAGATAGAGTTGCAGTGGAGAACTTCTTCATAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0521200.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTGTTACTCTTGACCTCCGAAAAACTTT GGATCCCAATGATGTTCAAAATGAGAAGTCACGAGGGCAGATTGTTGTGGAATTGACTTATAAACCTTTCAAGGAGGAGG AGCTGGGCAGGGGATTTGATGAGACACAGACAGTGCCGAAAGCACCAGAAGGTACTCCAGCTGGTGGAGGTCAGCTTGTA ATAATAGTCCATGAAGCACAAGATGTTGAAGGGAAGTACCACACTAATCCACATGTCCGTCTTATTTACAGAGGAGATGA GAAAAAGTCTAAGCGCATAAAAAAGAACAGGGATCCAAGATGGGAAGAGGAGTTCAAATTTATGGCGGAGGAGCCTCCCA CCAATGACAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCATCAGAAGGAATCATTGGGTTATGTC GACATCAATCTTGGGGATGTTGTTTCTAACAAAAGGATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCAT TCAGATAGAGTTGCAGTGGAGAACTTCTTCATAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0521200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGMNVIPLKEVSPEEPKRVTLDLRKTLDPNDVQNEKSRGQIVVELTYKPFKEEELGRGFDETQTVPKAPEGTPAGGGQLV IIVHEAQDVEGKYHTNPHVRLIYRGDEKKSKRIKKNRDPRWEEEFKFMAEEPPTNDRLHVEVVSTSSRNLLHQKESLGYV DINLGDVVSNKRINEKYHLIDSKNGRIQIELQWRTSS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10774:SF175 View details on PTHR10774:SF175 Search for proteins/transripts with this domain View external data on PTHR10774:SF175	1	196	196	4.2E-112	–
PANTHER	PTHR10774 View details on PTHR10774 Search for proteins/transripts with this domain View external data on PTHR10774	1	196	196	4.2E-112	–
SUPERFAMILY	SSF49562 View details on SSF49562 Search for proteins/transripts with this domain View external data on SSF49562	76	194	119	3.87E-19	–
Pfam	PF00168 View details on PF00168 Search for proteins/transripts with this domain View external data on PF00168	77	179	103	1.5E-13	IPR000008 Show description in modal box View details on IPR000008 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:2.60.40.150 View details on G3DSA:2.60.40.150 Search for proteins/transripts with this domain View external data on G3DSA:2.60.40.150	77	196	120	3.5E-23	IPR035892 Show description in modal box View details on IPR035892 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50004 View details on PS50004 Search for proteins/transripts with this domain View external data on PS50004	78	161	84	9.45	IPR000008 Show description in modal box View details on IPR000008 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00239 View details on SM00239 Search for proteins/transripts with this domain View external data on SM00239	78	176	99	9.0E-10	IPR000008 Show description in modal box View details on IPR000008 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0521200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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