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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0521200 |
| Transcript ID | LotjaGi3g1v0521200.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-dependent lipid-binding (CaLB domain) family protein; TAIR: AT2G20990.1 synaptotagmin A; Swiss-Prot: sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1; TrEMBL-Plants: tr|I1LJ17|I1LJ17_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93774469..93779926) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTTCTTCAGCACCATTTTAGGGTTTTTCGGATTCGGAGTTGGAATCTCCATTGGTCTTATCGCTGGCTATTTTCT CTTCATCTACTTCCAACCCACCGATGTTGAGGTAGGTCTTCATCAATTCAATTCTTCACGCATTCACCATTTTTCTGATT CTCTGTAACTGTTGTAAATTTGTAATTGTATCTTCATTTTTCTTCGATTGTTTCGGACAGGATCCGAAAATCAAGCCACT GGCGGAGCAAGACGCGGAGACGCTGCTACGAATGCTCCCTGAGATTCCGCTTTGGATTAAGAATCCAGATTTTGATCGAG TAAGCAAATACCCACCACGTATAACCACCGCATTTTCCGAAATTAGGATTTGGATACTGAATTATTGATTTTTTTTTTCT CTAGCTTGACTGGCTGAACAAGTTTGTGGAATATATGTGGCCTTATCTTGACAAGGTGTGTGGTTTTTATGTGATTTGAT TTTGACCCTTTTTCCAAATTGTCGTTGCTCCTTGTTTGATTTTTTTTTTTTCTGAATATATGTTATTTTTTGAACTCTTG TTTAGGCAATTTGTAAGACTGCCAAGAACATTGCAAAACCCATAATTGCTGAGCAGATTCCTAAATATAAAATTGATTCT GTTGAGTTTGAGACGCTCACTTTGGGATCCCTGCCGCCAACTTTTCAAGGTTAGTAGAGATCTATTCATTATTGTGTGAG GAAGGACCTTTTAGCTGTGTGCAGAGGGAGTTGGGGTATTATTGTCCAATGTTTTGTAATCTGGGTTAGCTACTTGCACT GAGTTTCTATTTTGGTGAAGGGATAGTAGTTATCAGTATTCGTTGTTTATAGATAGATGATGCTAGTGCTTATTAGTTAT TACTGCTAAATAAACAGCTGACTTAATGGTGTTAGAGAAAGATTAACTAGCATCCCCACAATAAGTACTGTTCAGTTCTC CCCTCAATGCTAGTTCTAGTAGCGTCTTCCTAAATCACAATGTGGAAACCCAAACACAAATTACAAATACACTCAAACGT ATGTTCGCTCCATAGCGATTAATTGTTGCCTCTCCGTTTAGTGCATGGCCTTTTTTGTCACGGGTTTTGTGAGTTTTCTC CTCTCTCAAGTTTGTATGAAACTGAGAGATTTATCATGGTTGTTGTACTTTCCTTGAACTTGGACGGAGAAGTTGGAAGA CGGTTTCTATTTAGAATTTGAAGAAAACTTGATGTGTTATACGATCCATTTTACATTAGAACCTCTTCTGGGTCTGGCTT GTTATTTGTGAGGCCGTTTTTGGAGTCTTAAAGACTAATACAATCTCTACACGTCTTCTCAAATTGGGCTAATTTTGATT GCTATTTTATAGGAGTTACCTGTTTGTTATATCATGAGTATTCTTGATACTTTTTGTTGACTACATATTCATAGGAATGA AAATTTATATGACTGATGAGAAGGAGCTAATTATGGAGCCTTCTGTAAAATGGGCGGGAAATCCTAATATCACTGTTGCT GTTAAGGCATTTGGGTTGAAAGCAACCGTTCAGGTAACCTATTTTTTTTTGCATGCACATGTTACTAGAGAGAGGATATA TAATTTCTGTTTTCTTTTCCTTTTCATGCTAAGAACTCTGTATATTTTCAGATCATGGATTTGCAAGTTTTCCTTTTGCC CCGCATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCTTGCTTTGCCAACATCAATGTCTCTCTCATGGAAAAGGTTTGTG ATTGTCGGGCGTATTACTCCTTCCCCCTAGCTTGGCATCCCACTTAATATGCAATATTGTAAATTGTATAATTTATGAAA TAATATTTTTTCTTCCCTTATGTTCTTCCTATACATATTGAGTAATTATTAGGACAGGTTTTATTCTGATTATCATTAAT TATGATTCATGTATATTATCTATAAATATTAGACCTCGTAATTTTCATATGATAGGTGAATAAAATTCTGATCACTCAGC TGTTAAGATGATATCATATTCATAACATATCTTTGATATGACATTAGACCCAAAATTGTGCCTTCAATGCGGACCCATAG CTAGCAGCCTTCGTTGGAATTAAAGTTGATAGAAGACTGGATGATAGGAAATTCAATCCTTAATGGGAAGTAGAATAAGC CTTTCATTCTGACCTAAAAAACACATCGCACTTATATTTCAAATGGTACTTCGACCATAAGGTCTTGAAACTTGGAGTGT TTAGGATTAAAAAAAACTCATGAGATTCATTGGTGTTTAGACACTTAAAAGCCGAAAGGTGGCTTCCAAAATATTTCGAG AGGCTGTTGAAGATCAATCTCTGAGTTGTTGTCAACAAGAAAATCATCTTATGATTTCCTCCCTTGTTAATAGTTTAACA ACTTCAAATATAATTGCGATTGTGCATTTTTTTTTGGGCAGACTGCTTTCATATATAATTGATTTGTGATTTGTGATTGT TGGCATATTTTAGTCGATCTCCTGATGATGATATATGAAGTGAATAATGCCATTGTAAGATAACTCTGATGATGCTGAAC TTCGAGCCTTTTTTACCCCTTAATCGTAATTAATTTGTTACTTTCTCTTTTATTTTGAATGTATGAGGAAACGTTGGTAC TGTATGGCCAATATTGATTTCCACTTGTAATCATATTAGGTATAATACTTATATTCTCTCTCTATCTCTTTGTTTTTGGT GTTTATTATTGTGCAGCCACATGTTGACTTTGGACTAAAGCTTGTAGGGGCTGATCTTATGTCTATTCCTGGCGCCTACA GGATTGTTCAGGTAAAAAACCTATCTTTTTTATTGTTTTGTTTGCCTTCCTATCCTAATTTTTTGAGGCATAAAATTGCT GACTTTCATCTTCCACTCATTTTAAAGGGGGAGTGGTCACTTTCCTGCATAATAAATAATTTCCCGCTGTAGAAATTGTC CACTGTTTTCGCAGGAGGATCTTATTTTGAAATATATAATATCTTAGTGAAGACGTTGATTTTTGTATGCACTGTTTTAT GTATATCTTGTATCAAGCTGGTTTCTGTATGTGCATGAAAGATAGAAATTCGATTGCCCAAGAAATAAGAACTGTTGTGT TTGTAATGATATGAACATGAAGAAATAAGAAATGTAATGTAGAAGTCTGAGGTTGAATGTTTTGTTGGCTTGTTAAGTGT TTCTTTCCAGGTCATTGAGAGTAAAGTTGTTGTGTCTTATAGAAGATGGCCAGTAGTGTCAGCTAGTTGTTACCCTTTTT GCCAGAAGCCATCTTTAGTTTGATCTGGACATTTTCTTCTCTTGTAAAGTTGAAATCTCATATTCAGGCTCTTGCTGTTT ATACAAACAAAATTTGATTGGGTGTGTCTATTGAATTGAAACTTGAAAGATTTTGATGGCTATTTTCAATGCCTTCCATT CTTTCGTCTGTACCATCTTTTTATGAAATTCTATCATTTGGAAAACTGGTGATTACATTATGTTGCCCGTATATGGCATT CTCAGTCTGGAAGGTGTATTTCTGGTTTATGGTATTATAGTAGCAAAACATTACCTTTTGTAACATATCTATATTTATGT TATTGTCATTAACTAGTGAATGTTTTGTTGAAGGTTTTATGGCTATGATACTAATTTATAGAGTGTTGTTTTCAGGACCT CATCAAAGATCAGGTTGCAAACATGTATCTATGGCCCAAAACCCTGGAAGTTCAAGTATTGGATCCAGTAAAGTATGTTT CTTCTTTACTCTAAAGTATATTTTCATAATATAATGGTATATTACCTTTTAACTCATTTCTGTTTTTTCTTGTGAATGTT ATTGGGAATCTTAGAGCTATGAGGAGGCCTGTTGGAATTTTACATGTAAAGGTTGTGCAAGCGATGAAGTTAAAGAAGAA AGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTGAAGCTTACTGAGGATAAGTTGCCATCGAAAAAGACTACTGTAA AGCACAAGAACTTAAATCCAGAATGGAATGAAGAATTTAATATGGTAGTCAAAGATCCAGAGTCCCAGGTTTTACAGATT AATGTTTATGACTGGGAGCAGGTAAACTTCTTGAGCTGAAAGCTTTATCCTATAGTTTTTTCTTTTCGATATATGAACTG AACATTGTTTTTTTATCTTTTCTTAGGTTGGGAAGCATGACAAGATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCC CCTGAAGAGCCTAAACGTGTTACTCTTGACCTCCGAAAAACTTTGGATCCCAATGATGTTCAAAATGAGAAGTCACGAGG GCAGATTGTTGTGGAATTGACTTATAAACCTTTCAAGGAGGAGGAGCTGGGCAGGGGATTTGATGAGACACAGACAGTGC CGAAAGCACCAGAAGGTACTCCAGCTGGTGGAGGTCAGCTTGTAATAATAGTCCATGAAGCACAAGATGTTGAAGGGAAG TACCACACTAATCCACATGTCCGTCTTATTTACAGAGGAGATGAGAAAAAGTCTAAGGTACATGATCCCCAGAAATACTT ACGTTCTACTTTTTATTCTTTCTAGAATATATGGAATGAATAAAATTGCAGGTTTCTTAATCTTTCCCCCCTGAAAAACT AGGGGAAAACCTCTTGACTCCACTAATGTCATTTGATCCATGTGGTTGAATTTGGTTTTTGTTGCTGTATTAATCTTCCA AAAAAACACATTGGGATGTAGATGTAGATGCAGATGTTGGGAGACAATTATGGATTGGGGTGTTAGTCGTGTAAGTATAC ATTGACTTGTTTTTTTACAGAATGGTAATGATTCTTTGGTTACTATTACAGCGCATAAAAAAGAACAGGGATCCAAGATG GGAAGAGGAGTTCAAATTTATGGCGGAGGAGCCTCCCACCAATGACAGATTACATGTGGAGGTTGTCAGCACTTCATCAC GAAACCTGCTCCATCAGAAGGTACATAATTCATGACAACTTTACCATTCTTATTATTAATATGATTATACTTCATAGAAA CAAAAACCTAAAACCTTTTCAGAGTTTGTTTCATGTCATCTACAACAGTAAAAGTTAGATCAGGAATCCTCAAATTATTG AAAAGAGTTAAAGTTACTTATGGAATGTGCACAAATATTTTATGATTCAAAATCCAAATGTAAAATAGTAGGCTCTATCA TACACCAGCCCTTTAACTCTGGTTAATATCATGAGCAATTGACACTTATTCTTCAAATTAAAGCAATTTGCCCACAACAT GCTATGATTGAGTTTTATTGTTTTTTGCTGTTCCTTTCGGCATTAGGAATCATTGGGTTATGTCGACATCAATCTTGGGG ATGTTGTTTCTAACAAAAGGATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCATTCAGATAGAGTTGCAG TGGAGAACTTCTTCATAG
CDS sequence (LotjaGi3g1v0521200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCTTCAGCACCATTTTAGGGTTTTTCGGATTCGGAGTTGGAATCTCCATTGGTCTTATCGCTGGCTATTTTCT CTTCATCTACTTCCAACCCACCGATGTTGAGGATCCGAAAATCAAGCCACTGGCGGAGCAAGACGCGGAGACGCTGCTAC GAATGCTCCCTGAGATTCCGCTTTGGATTAAGAATCCAGATTTTGATCGACTTGACTGGCTGAACAAGTTTGTGGAATAT ATGTGGCCTTATCTTGACAAGGCAATTTGTAAGACTGCCAAGAACATTGCAAAACCCATAATTGCTGAGCAGATTCCTAA ATATAAAATTGATTCTGTTGAGTTTGAGACGCTCACTTTGGGATCCCTGCCGCCAACTTTTCAAGGAATGAAAATTTATA TGACTGATGAGAAGGAGCTAATTATGGAGCCTTCTGTAAAATGGGCGGGAAATCCTAATATCACTGTTGCTGTTAAGGCA TTTGGGTTGAAAGCAACCGTTCAGATCATGGATTTGCAAGTTTTCCTTTTGCCCCGCATTACTTTGAAGCCTTTGGTTCC TAGCTTTCCTTGCTTTGCCAACATCAATGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGACTAAAGCTTGTAGGGG CTGATCTTATGTCTATTCCTGGCGCCTACAGGATTGTTCAGGCTCTTGCTGACCTCATCAAAGATCAGGTTGCAAACATG TATCTATGGCCCAAAACCCTGGAAGTTCAAGTATTGGATCCAGTAAAAGCTATGAGGAGGCCTGTTGGAATTTTACATGT AAAGGTTGTGCAAGCGATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTGAAGCTTACTG AGGATAAGTTGCCATCGAAAAAGACTACTGTAAAGCACAAGAACTTAAATCCAGAATGGAATGAAGAATTTAATATGGTA GTCAAAGATCCAGAGTCCCAGGTTTTACAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCATGACAAGATGGGTAT GAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTGTTACTCTTGACCTCCGAAAAACTTTGGATCCCA ATGATGTTCAAAATGAGAAGTCACGAGGGCAGATTGTTGTGGAATTGACTTATAAACCTTTCAAGGAGGAGGAGCTGGGC AGGGGATTTGATGAGACACAGACAGTGCCGAAAGCACCAGAAGGTACTCCAGCTGGTGGAGGTCAGCTTGTAATAATAGT CCATGAAGCACAAGATGTTGAAGGGAAGTACCACACTAATCCACATGTCCGTCTTATTTACAGAGGAGATGAGAAAAAGT CTAAGCGCATAAAAAAGAACAGGGATCCAAGATGGGAAGAGGAGTTCAAATTTATGGCGGAGGAGCCTCCCACCAATGAC AGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCATCAGAAGAAACAAAAACCTAAAACCTTTTCAGA GTTTGTTTCATGTCATCTACAACAGTAA
Protein sequence (LotjaGi3g1v0521200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFFSTILGFFGFGVGISIGLIAGYFLFIYFQPTDVEDPKIKPLAEQDAETLLRMLPEIPLWIKNPDFDRLDWLNKFVEY MWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKIYMTDEKELIMEPSVKWAGNPNITVAVKA FGLKATVQIMDLQVFLLPRITLKPLVPSFPCFANINVSLMEKPHVDFGLKLVGADLMSIPGAYRIVQALADLIKDQVANM YLWPKTLEVQVLDPVKAMRRPVGILHVKVVQAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNMV VKDPESQVLQINVYDWEQVGKHDKMGMNVIPLKEVSPEEPKRVTLDLRKTLDPNDVQNEKSRGQIVVELTYKPFKEEELG RGFDETQTVPKAPEGTPAGGGQLVIIVHEAQDVEGKYHTNPHVRLIYRGDEKKSKRIKKNRDPRWEEEFKFMAEEPPTND RLHVEVVSTSSRNLLHQKKQKPKTFSEFVSCHLQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 500 | 500 | 0.0 | – | |
| PANTHER | 1 | 500 | 500 | 0.0 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 31 | 25 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 32 | 515 | 484 | - | – | |
| ProSiteProfiles | 67 | 252 | 186 | 25.45 | ||
| Pfam | 67 | 249 | 183 | 7.4E-16 | ||
| Gene3D | 259 | 409 | 151 | 5.2E-35 | ||
| SUPERFAMILY | 260 | 396 | 137 | 4.61E-32 | – | |
| Pfam | 263 | 364 | 102 | 5.3E-24 | ||
| SMART | 264 | 364 | 101 | 1.5E-21 | ||
| ProSiteProfiles | 265 | 349 | 85 | 16.924 | ||
| CDD | 265 | 367 | 103 | 1.49629E-26 | – | |
| PRINTS | 280 | 292 | 13 | 2.2E-7 | ||
| PRINTS | 307 | 320 | 14 | 2.2E-7 | ||
| PRINTS | 329 | 337 | 9 | 2.2E-7 | ||
| Pfam | 421 | 491 | 71 | 3.4E-9 | ||
| Gene3D | 421 | 497 | 77 | 7.4E-12 | ||
| SUPERFAMILY | 421 | 489 | 69 | 3.87E-12 | – | |
| SMART | 422 | 514 | 93 | 0.012 | ||
| ProSiteProfiles | 422 | 499 | 78 | 8.518 | ||
| CDD | 423 | 486 | 64 | 2.1066E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi3g1v0521200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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