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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0533000 |
| Transcript ID | LotjaGi3g1v0533000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rop guanine nucleotide exchange factor; TAIR: AT4G38430.1 rho guanyl-nucleotide exchange factor 1; Swiss-Prot: sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1; TrEMBL-Plants: tr|A0A0S3SE88|A0A0S3SE88_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0533000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94977029..94981049) extracted from Lotus japonicus Gifu genome v1.2.
AAACTAACCATTAATTGAGAAATTTTCATTCTAATTGATAAGAAAACTTTTGACATTCTCTCCTACACATATCCCGATGC ACAGTTACCCGCCGTTTGTTACTGTGTTCCCGCACGTTGATTTCCCTCCACCATCATCCCATATCAACGGCTTCTCCCTC AAACCTGGCCCACACACACCCAACCAAATCCCTCCACGTCACCATGCTCGGAAACGACGGTGTCGGGTTCTTAACGCTGC TCTAACGGAAAGACAAACCCTGCAAACGCCGTTTCTTTTTCTCTTTTGCCCCCATCAAATCATCACCACCACCACCACAC AGACACAGACACAGACAAAGAAAACGAATGTTGAGTGGAAGAGAAGAGAACGTTGTAGCGAGTTAACTAACTCAGTGAGT GACTCAGTGCTGCAATGTGTGTGAGATCTCTGTGAATTTTGCTGTTGCTACTACAATGGGGAGTGTTTCGTCTGAGGAAG GTTCTGACCGATGTGGGAGCTACAGCTTGAGCGCTGACGTCAGCGAATCCGAGAGCTGTAGCAGCTTCCGCCGTTTCGAC GCCGAGGGGGCTTCCAGCTCCGCCAACCTCTCTCCGCCTCCGCTTGCCGCCTCTCACTTCAACTTCCCGCCGCCGCAGGT GATGTTGCCGGTCATCGGTGGCAAGGATGTCGTCGTTTGGGATCACAAGCGTGACCTTGACTTGTCAGGTACTCTCTCAT AGCCTCATTGACTCTTCCTTCTCTTCCGTACAATTGCAGATTCCGAGATTCGCTCTTCAATTCACGCTGAGTGAGGAGCG AGAGTGTTGAATTTGAAGAATGAACAGTTTTTCTGTTTTGTTTTTGTTTTGATTTGTTTTTGCAGAAGTGGAGATGATGA AGGAGAGGTTCGCTAAGCTGCTTCTAGGGGAAGACATGTCTGGTGGGGGAAAAGGGGTCTGCACTGCGCTTGCTATCTCG AATGCAATCACCAACCTCTCTGGTTTGTTCTTTTCCTTGCTTAATTTGGAGTTAATCATCAAATTAGCACTTACTAAATG TAGATTTTATAAATCAATTTAGTAGTTACATCTAGCATTTTAAGAATTAACAGAATTCTCATGACTAATTTGTGAAGGTC AAAGAATTTGGTTACCCAAATGGAAATGCGATTTGGTTTAACTACTAATTAACTCTTTACTTGTTAATTTGGGGATGTTG TATAGTTTAATGACTAATTTAACTATTTACTTGTTAATTTGAGTGTAAAAGATGTTAATCTTTGTGTGGGTGGGATTTTA ATGGCAGCAACTGTGTTTGGCGAGCTATGGAGGTTGGAGCCACTGGCACCGCAGAAGAAAGCCATGTGGAGAAGGGAAAT GGAATGGCTTTTATGTGTAAGTGACTCAATTGTGGAGCTTGTGCCGTCGGTGCAGCAGTTTCCTGGGGGTGGAACCTATG AAGTGATGGCTACGCGTCCTCGTTCTGATTTGTACATCAATCTCCCGGCTTTGAAGAAGCTTGATGGGATGCTGCTTAGC ATGCTGGAGGGTTTTCATGATACTCAGTTTTGGTATGTTGATAGGGGGATTATATTGGGCGATTCCAAGGATTGTGATGA GTATGGTAGACCTTCGGTTCGGCAAGAGGAGAAATGGTGGCTTCCATCTCCTAAGCTTCCACCAAACGGCTTGTGCGAGG ATGATAGGAAGAAGTTGCAGCAGTGCAGGGATTGCACCAACCAGATACTGAAGGCTGCCATGGCAATCAATAGTTCTGTT CTTGCTGAAATGGAGATTCCTGGTGCCTATGTAGAATCGTTGCCAAAGGTAATGCTTTGTCGTGCAAACAGGAAATAAAA TTAGTTCATTGCCATATTTCTGTATGCACTGGGTTCTTAATTTTGGTTTGGTCAATAACTTCTAATATATGAATGTCATG CTAAAAGTGGTAGACAGACATCAACTCTAATGCATCTTTGAGTTGCACAAACCTTTAATTTTGTGAGATATTTATGTATA GAAGTGCTGACTACTGACTCGTGGACTTGACACCCCCTGCCTCTGTTTTATCTTTGGTTCAAAAAAATAGATTGAACTAG AATTCTGTTATGGCTTGATATTTGGTAGAATTTCTTGAAAATGGGCTAAAATTTGCTGAAAACTGAAATGCCTTGTTCAT TTGTACAACTACAAATGCAGAATGGGAAAGCTTGTCTAGGGGATATAATCTATCGGTACATAAGTGCTGACCAGTTCTCA TCAGAATGTCTCCTTGATTGCCTGGATCTTTCATCAGAGCACCACACTCTGGACATAGTTAATAGAATTGAGGCTGCTGT GAATGTATGGAGACTGAAGGACCATAAGAAACATCTAAGTTCTGTGAAAGCCAGACGGTCTTGGAGTGGGAAGGTTAAGG GCCTTGTTGCTGATGGGGAAAAGCACCATTTTCTTTCCCAAAGGGCAGAGACACTTCTACAAAGCTTGAAACACCGATTT CCAGGACTCCCTCAAACAGCACTAGATATGGCCAAGATACAATACAATAAGGTGTGTGTTTTTCTTGATCTTTCAGATCT TTAGTTTGAATTGAACTCCCCACTTGTTCTGTTGGACTATTAAGTTTGGTGTCACTGCTTGTAATAAAAGTTGAAGTAAA TTAGCTAATAGTTTGTGTCAAGGCAATATGGGATATCTTAGGTGAATCAGATTGGGGCAATTCTTTTGTTAGTTGCAGTT AGCACTCAATTTTTGGCCAAAAATAAATCCTGGCAATGGTATAACTATAAAGAACTAATAGTTTCATTCCACCTGTAATT AGTAAAAGAATATAAAGAATTTCCTTACAAATAGATCAGTTGTGATTCCTCAGTTTAATGGTCATTATTGATGATTGGTT GTGGCATGTCAATGAGATCAATTACAGTCTATAGCTTCTGTCTCTAGATGTTACCGACTCTGGGCTTTATAAGTGGTTTA TGATTAATAAACAGTTACTGAGGTTTGCCACTGGGAGAAGGGGGCTTAGAATCAACTGAATAAACTTCATAGAATTTTCT TTTTCTTGCAGGATGTAGGGCAGGCTATTCTTGAAAGTTATTCAAGGGTGATGGAGAGCTTGGCCTTCAACATAATGGCC AGGATTGATGATGTCCTTTATGCAGATGATACTGTAAAACGATGTGCAGCTGCAGATTCTATCCCTCTGTTCAGCAGGGG CGGTTTTGGGGGTCTTCCCATGCAGAAGCGAATGTCTCCTAGCCCCTTCTCAATTCAACACAGCCCATATGCCTCTCCAT TTGCAACCCCATCATTCTGCTCCTCCTCTCCTGTTTCCGGGAGCCCTTGCAGTCCGCGGAGGACACGTGCTGTGAAGAAG AATGCTCAGGCAACGGAATCAAAGACCGAAAAGTTGGCAGCTGCTGATTTTGAGAGGGTATGGTCATATACGGGAAACCT GAGTGCAAGAAGAGCAACTGGTGATGCTCCAGAAAGGGACTGAATTATGCATCCTGAGCTAGTCATCAATCATCTTTAGA TGTCTTCTAAATGCGGATCAGGCTAAAGCCTCTGGTCCTGTTCCCTGTATATGCGGGTCTAATTTTTGTATATTCGTAGG TAGCACGAGTAGGATTATGTTGAAAGATTATTAGCATGTTTGGATCAGTTTTTTTTCCTTCAGAATCAATTTTGGAATCC AGAAGCTACTCACATAAGCTTCTCTCCAAAAGAGATTTTGGCTTTAGAATCAATTGTAGAATAATTCCAAACATGCATTA TGCCAATGGATCATCAGTTAAAAACGTTTCCTCACTAGTATAAAAGTCCACTTTTCTATAGGTCAGTCCTGTTGCTAAGA TGGTCTGCTATAAATGCTAAATAGAGTTCTAGACTATATAACCCATACATGATTCAGCAATAGTCATGTGCCCTTCCTTT ACTTCACTGCCATGACAGTCATTAATATTGTCCGGTTGAAACAGGTATAACAATGAATCCCATGTCCCAGAATGTACTGT TTTAATCGGAAAACAATAATG
CDS sequence (LotjaGi3g1v0533000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGTGTTTCGTCTGAGGAAGGTTCTGACCGATGTGGGAGCTACAGCTTGAGCGCTGACGTCAGCGAATCCGAGAG CTGTAGCAGCTTCCGCCGTTTCGACGCCGAGGGGGCTTCCAGCTCCGCCAACCTCTCTCCGCCTCCGCTTGCCGCCTCTC ACTTCAACTTCCCGCCGCCGCAGGTGATGTTGCCGGTCATCGGTGGCAAGGATGTCGTCGTTTGGGATCACAAGCGTGAC CTTGACTTGTCAGAAGTGGAGATGATGAAGGAGAGGTTCGCTAAGCTGCTTCTAGGGGAAGACATGTCTGGTGGGGGAAA AGGGGTCTGCACTGCGCTTGCTATCTCGAATGCAATCACCAACCTCTCTGCAACTGTGTTTGGCGAGCTATGGAGGTTGG AGCCACTGGCACCGCAGAAGAAAGCCATGTGGAGAAGGGAAATGGAATGGCTTTTATGTGTAAGTGACTCAATTGTGGAG CTTGTGCCGTCGGTGCAGCAGTTTCCTGGGGGTGGAACCTATGAAGTGATGGCTACGCGTCCTCGTTCTGATTTGTACAT CAATCTCCCGGCTTTGAAGAAGCTTGATGGGATGCTGCTTAGCATGCTGGAGGGTTTTCATGATACTCAGTTTTGGTATG TTGATAGGGGGATTATATTGGGCGATTCCAAGGATTGTGATGAGTATGGTAGACCTTCGGTTCGGCAAGAGGAGAAATGG TGGCTTCCATCTCCTAAGCTTCCACCAAACGGCTTGTGCGAGGATGATAGGAAGAAGTTGCAGCAGTGCAGGGATTGCAC CAACCAGATACTGAAGGCTGCCATGGCAATCAATAGTTCTGTTCTTGCTGAAATGGAGATTCCTGGTGCCTATGTAGAAT CGTTGCCAAAGAATGGGAAAGCTTGTCTAGGGGATATAATCTATCGGTACATAAGTGCTGACCAGTTCTCATCAGAATGT CTCCTTGATTGCCTGGATCTTTCATCAGAGCACCACACTCTGGACATAGTTAATAGAATTGAGGCTGCTGTGAATGTATG GAGACTGAAGGACCATAAGAAACATCTAAGTTCTGTGAAAGCCAGACGGTCTTGGAGTGGGAAGGTTAAGGGCCTTGTTG CTGATGGGGAAAAGCACCATTTTCTTTCCCAAAGGGCAGAGACACTTCTACAAAGCTTGAAACACCGATTTCCAGGACTC CCTCAAACAGCACTAGATATGGCCAAGATACAATACAATAAGGATGTAGGGCAGGCTATTCTTGAAAGTTATTCAAGGGT GATGGAGAGCTTGGCCTTCAACATAATGGCCAGGATTGATGATGTCCTTTATGCAGATGATACTGTAAAACGATGTGCAG CTGCAGATTCTATCCCTCTGTTCAGCAGGGGCGGTTTTGGGGGTCTTCCCATGCAGAAGCGAATGTCTCCTAGCCCCTTC TCAATTCAACACAGCCCATATGCCTCTCCATTTGCAACCCCATCATTCTGCTCCTCCTCTCCTGTTTCCGGGAGCCCTTG CAGTCCGCGGAGGACACGTGCTGTGAAGAAGAATGCTCAGGCAACGGAATCAAAGACCGAAAAGTTGGCAGCTGCTGATT TTGAGAGGGTATGGTCATATACGGGAAACCTGAGTGCAAGAAGAGCAACTGGTGATGCTCCAGAAAGGGACTGA
Protein sequence (LotjaGi3g1v0533000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVSSEEGSDRCGSYSLSADVSESESCSSFRRFDAEGASSSANLSPPPLAASHFNFPPPQVMLPVIGGKDVVVWDHKRD LDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMEWLLCVSDSIVE LVPSVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLLSMLEGFHDTQFWYVDRGIILGDSKDCDEYGRPSVRQEEKW WLPSPKLPPNGLCEDDRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPGAYVESLPKNGKACLGDIIYRYISADQFSSEC LLDCLDLSSEHHTLDIVNRIEAAVNVWRLKDHKKHLSSVKARRSWSGKVKGLVADGEKHHFLSQRAETLLQSLKHRFPGL PQTALDMAKIQYNKDVGQAILESYSRVMESLAFNIMARIDDVLYADDTVKRCAAADSIPLFSRGGFGGLPMQKRMSPSPF SIQHSPYASPFATPSFCSSSPVSGSPCSPRRTRAVKKNAQATESKTEKLAAADFERVWSYTGNLSARRATGDAPERD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 557 | 557 | 1.9E-300 | – | |
| PANTHER | 1 | 557 | 557 | 1.9E-300 | ||
| Gene3D | 76 | 324 | 249 | 2.1E-109 | – | |
| ProSiteProfiles | 76 | 456 | 381 | 115.597 | ||
| Pfam | 84 | 450 | 367 | 7.0E-182 | ||
| Gene3D | 372 | 455 | 84 | 2.8E-20 | – | |
| MobiDBLite | 502 | 527 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi3g1v0533000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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