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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0548700 |
| Transcript ID | LotjaGi3g1v0548700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methionine-tRNA ligase, putative; TAIR: AT3G59980.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase; TrEMBL-Plants: tr|I3SGE2|I3SGE2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0548700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96528309..96533130) extracted from Lotus japonicus Gifu genome v1.2.
GCTTTCCAAATTATTAAAAAAAAATATTTTTATTCCAAGTGTGAGAAAAAAACAACCTTATTTTTCTCATAAATTACATT TCCTCTTCATACACAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCATCTCATCTCATCTCATCACACAATACTCAT TAAAAATGGCAAATGCTTTGAAGGGCAATGTGATGCTCTCATCCCTTGTCTCCTTACGAAGAACCACAACAACCCATTGC TCCCTTCTTCCCAAAGCCACCCGTTTCGGTTCCAAGTTCCCTTTTTTCTCACTCTCATCATCTTCATCCGCAAAAACTCC ATCTGGGTTTCCTTCATTCTGCACACTTTCTTCTTCCTCCACAGAGGAGGCAGTGACGGAGGTCACACCAGCTGGCGGCA ATGGTGAAACCGAGAAGAGTGTCAGTGTTAAGGATTCGGCGGCGCTGCTTGACATAAGGGTTGGTCAAATTCTGAGAGCA TGGAAACACGAAGAGGCTGATTCTCTTTATGTGGAAGAGGTTGATATTGGTGAGCCTGAACCCAGAATCATATGCAGTGG CCTTGTCAACTACATCCCTCTTGAACATCTTCAGGTTAATTCAGATTTTAATTCATTTTCAAATTTCAATATGTGAGTGA GTTTCTTCATTTTCAACTATGCATTGGTAATGAAATATGGATTTTGGTGATAGAGGATTATTTCATTGGAAATGTTTCAA CTTGGATTCCATATGTAGTAATTGTTGTGATTCACTGTATTGTATTGTTGTTCAATATGGTCTTTCTGATAAATTATAAT GGTGATTACTAAGGTGTTATGCTTTGGCTATTTGGTGTCTATTCGCTAAGTGATATCTTATCTTTGTGCATTGAAGTGGT TATTTTGAATCACTGTATAACATTTTAAGGTGCCACCCATCATAGAGGAATTAGTTCATGTTATTCTCTCTTGATACATT TGTCTATAGTTTAATATTCAAACTTATATTCATTTGGATAGTTCTTAGTGTTAGCCGTGGATGAAATGTATCATCACTTT TATGACTGCACCTTTTCGTACCTAAGCTTCAATTTCTGAATTTAAAACTCACAATCAACATGCTATTTACTAGAAATGCA CTCTCTTTATCTTCTACTTTTACTACAAGTATACCCCAACACTGCATCAAATCAAATTAGTTTTGACATCGTTTGATTAC AAACAGCCTTTTTAATTTTTATATACTAATTTCATCATTTTTAGTACAGAACACATAGTAAGGATAAAACTTAGCCCATC AGGATTGGTGAAGAAGGCGAATTAATTGATTTAATTTATGGGAATTAGAAAGTAACTTAACAGGAGATGAGAGTATGGAT AGTCATTGTGGTCAAGTTAATTAGCTTCTATAATGTCAATTGTTATTCAAGGAGAACGAAATTAGGTAGAGCTAAGTATT AAAGAGATAGATGTGATATGAACGAAAACTGAAAGACAATTCATGACCGAGAGGAGTTAGAAATACAATGGATATGATGA GAGTGGTGAGATTCTGCTGACATGGCGTCCAACCGCTACTGCGGTTTTCTTGATCTATCTGATTGGTCAAGGAATTAGTT ATTGACTTTCTCCGACCCTTACTGTCCAACCTGAGAAGGGGGATATGACTTGGAAGCTGGCTTTTCTTGTCAGCCCAATG AACAGACAAACAGGTATCAAAAAAAGAAGGCTTAAATACTCTAGGGGTCCCTGAAATTGTACCCCGTATCAAAATAAGTC CCTGAAATTTTTTTTTCCGATTCCGGATCCCTGGAATTGTTTTTTTAATCAGAATAAGTCCCTACGCCGGAGAAGACGGT GGTTGACGACGGCGGTCATGGCGGCGCTACGACCAGGGTGTTGGGCCGGCTTCGTCTCGTCCTCAGGAACTCAGTGGTGG TGGTCTCGTGGGCTGGGTCGTCACAGTTGAAGAGAAAAGGCCAGTCGCAAGTTGATTTCTTCTCGCCGGAATTTATGGAG CTTCTCGGTTTCTTCGTTTTAGCTTTGTTTCTTGCGATTTCTTCGCCCATATCAGATATATGAAGGTCTAGGAGTGTTTT AAACATGTTATTTCATGGTTTGTGGAAACAATGAGGAGGCAACCACTGTCTTCTCCGGCGTAGGGACTTATTTTGATCAA ACAAATTTTTCTAGGGACCCGGAATCGGAAAAAAAAATTTCAGGGACTTATTTTGATACGGGGTACAATTTCAGGGACCT ACAGAGTATTTAAGCCAAAAAAGAAAGAAGAACTCATCTTTCTTTTATCACTTAGGAGCAGCCCGGCAGGATAGGAAGGC AAGTCTGTAACGGTATCTATAAAATACCGTCTCAATTCATATGGTTGTAGCACAAGGTTAGAATTCTAGCTCTTCTAGGG TGGTATCTCACAGGAGATGATTGAATCAAAATAATTCCCTTTCAAGTTCTACTTTTGACATGGGAACTCCTCCGTCTATG ATTCAACTTTTATATGGATATTCTGCCTTATGGTTGATTCTTTAATGTATGCTTACAGGGTCTATATAATTTTTGCAATG TTAATAAGAATAAAATAGAAAGAACTGATAAAGCATGTGTTTAAGGCCAACCTTATGGGTGCTACAGACTCATTTGCGCG TTTGAAATTGTTTTGCAAAAGAAAATTATAAGATGATTGTGTCTTGTTCCAGGTGAATTTGTCATGTGGAATTTATAAAT GTCGGGGACATAAACAAATTTTGCATAACTTAACTGCTCTACGTATATCACTTGATGCTGATTAAAATTTGAATTATGTC AGCAAGACACCTTGTGTGGTGCAAATAATGTATACGATGATGGGTTAGATGGACATAAATGTACATAGTTGAATTTGTGT AATTGTCTGTGTTTATCTCAACTTCGCAGAAATGGATTTGTTGATGTTTCATATTGGCATCATTTTTTTGTTCTTCTGTA CAATTTAACAAATAGAAGGCAAAATATGCAGGGCAAAAAGGTCATTGTTCTTTCCAATCTGAAGGCAAGGAATATGCGTG GTGTAAAGTCTAGTGGAATGTTGATGGCCGCTTCTGATGCAAAGCATGAGAATGTTGAACTTCTATTCCCTCCTGAGGAA GCAACCCCTGGTGAAAGAATATGGTTTGGGTCAGAAGATGAAAAGGATAATCAACCTGCTGCTGCTGCTCCGAATCAGGC AATTCCTCTTCTTGAATAGTAATTTATATGATTGCCTAGTTGAATATTGAAGTTCTAGAATTTAGATAACTTATCATTTC ATAAATAAAGCTAATTATCTGATAGTTTCTTGTGATAAAGCCAAATTTAGTGAAAGGAGCAAGACACATCCTTTTTTTGG TTTTGAGCGAACAAACAAGCACTTAGTCATGTTTCAAAATCGTCATGAGAATAAGTCCTCTTATGTTAGATTTGTACATA CCTTGTCATGTGAAAATTGTGTGACTTCATAGATATTAAATAAGCGAGGTCTTACGGAAATTTGTTTTTGTGTTTGAAGA GAGAAACATACATAAAATGTTCATGTGACAAAGTAATGTGAAATCCAACATGAGAGGAATGAATCCCATTTTAGACAGTT TGATGAGATGTCCTATAGTTTATGTGGTTCAATAGTAGTTTTTAATAGTAGATGCCTTCAATTACAGCTAGTGATTACAA AGATCTTAGACCGGGACATTGGGTTGCATTTTTCTTGAAACTGAAAAAGATAAGTGTTAGCAGCACACTATTTTAAACAC ACTTTTCCACTCACTCCCTAAATTGACCTATGTTCAAAAGAGTATTACTAGCTTCTCTCTGACAAATTTACGGGGTGCAT ATTTATGTTTCTAATCAAGACTCTAGAAACTAAATCCTCAAGTCTATAGATCAATGAGTTTCCTTGAATGGGTGTTGTAT GTAAGTCTTGTACACTGTACTTTATGAATGGGCGTCATTACCATTTATAGAGCACAGTAATACTAGAATAACAATAAAAG TCTTAGGTCAGCTATATGGATCACTTGATCCATATTAAAGATACACGCAGTTTTACGCTGATTGCAACAAGCCTATCACA ACTTTGCTCACTTAACCGGGCTGAGGACCAGCCATGACACAACTCAATAATACTACAAGAATAGTTATAATTGTTTTTTC TCATATGTGGGTAATTTCAGAACAAAAAGTCTAATTGTTCTGTTATATTATGCAGATACAAAAGAAAAAGATATGGGAAT TGGTGCAGCCTCATCTGAAGACAGATGCTTCTTGTACTGCATTGCTAGGAGGGGTGCATGTCATGCGTACATCTCTAGGT TCAGTGGCATGCCAGTCATTGCAGAATGCAAATATCTCCTGATGAACAACCAGAGCACATGTTTGGAATTCCTTGTAGAT TGATTCTAAAGCCAGAATCAATTCTAGGGAGAAGCTTCAGCGAGTAGCTTCTAGGTGCCAGAATTGATTCTAGGGAAATA GAATTTGATCCGAAAATGCTATGAATTTCTTGCTCTACATAGCCATACTGGCACTGTCTATCCATATGCTATTTTTTCTT CTTCATAATGTAATTTTTGGTAGTGTGTGAAAAATTGTTTTACATGTAGTCAATTTTGTTTAATGGTCTTAATTTATATT TAAGTGGTCTTTTTTTTTTTGGTGGAAAAGTGGTCTTCATAACAAAATGATTAACATGAAATATGGGCTCTCTTCATTTC TGATCCCATGTTTTACGCCAAAAGTCCATTAGGATTACTTGGGCTATGGGCTTTTTGTCCCAATCTTTCATTTTTATCTT AATAAAATTAAGTAAATTGGTG
CDS sequence (LotjaGi3g1v0548700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAATGCTTTGAAGGGCAATGTGATGCTCTCATCCCTTGTCTCCTTACGAAGAACCACAACAACCCATTGCTCCCT TCTTCCCAAAGCCACCCGTTTCGGTTCCAAGTTCCCTTTTTTCTCACTCTCATCATCTTCATCCGCAAAAACTCCATCTG GGTTTCCTTCATTCTGCACACTTTCTTCTTCCTCCACAGAGGAGGCAGTGACGGAGGTCACACCAGCTGGCGGCAATGGT GAAACCGAGAAGAGTGTCAGTGTTAAGGATTCGGCGGCGCTGCTTGACATAAGGGTTGGTCAAATTCTGAGAGCATGGAA ACACGAAGAGGCTGATTCTCTTTATGTGGAAGAGGTTGATATTGGTGAGCCTGAACCCAGAATCATATGCAGTGGCCTTG TCAACTACATCCCTCTTGAACATCTTCAGGGCAAAAAGGTCATTGTTCTTTCCAATCTGAAGGCAAGGAATATGCGTGGT GTAAAGTCTAGTGGAATGTTGATGGCCGCTTCTGATGCAAAGCATGAGAATGTTGAACTTCTATTCCCTCCTGAGGAAGC AACCCCTGGTGAAAGAATATGGTTTGGGTCAGAAGATGAAAAGGATAATCAACCTGCTGCTGCTGCTCCGAATCAGGCAA TTCCTCTTCTTGAATAG
Protein sequence (LotjaGi3g1v0548700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANALKGNVMLSSLVSLRRTTTTHCSLLPKATRFGSKFPFFSLSSSSSAKTPSGFPSFCTLSSSSTEEAVTEVTPAGGNG ETEKSVSVKDSAALLDIRVGQILRAWKHEEADSLYVEEVDIGEPEPRIICSGLVNYIPLEHLQGKKVIVLSNLKARNMRG VKSSGMLMAASDAKHENVELLFPPEEATPGERIWFGSEDEKDNQPAAAAPNQAIPLLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| PANTHER | 45 | 212 | 168 | 1.7E-69 | – | |
| PANTHER | 45 | 212 | 168 | 1.7E-69 | – | |
| Gene3D | 89 | 214 | 126 | 2.7E-46 | – | |
| CDD | 90 | 194 | 105 | 1.73732E-58 | – | |
| ProSiteProfiles | 91 | 194 | 104 | 32.238 | ||
| SUPERFAMILY | 91 | 204 | 114 | 9.79E-37 | ||
| Pfam | 97 | 192 | 96 | 2.4E-29 | ||
| MobiDBLite | 196 | 218 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | TRNA binding | Interacting selectively and non-covalently with transfer RNA. |
Expression pattern of LotjaGi3g1v0548700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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