Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PS50886

Source: ProSiteProfiles

Description

tRNA-binding domain profile.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000049
Molecular function TRNA binding Interacting selectively and non-covalently with transfer RNA.
Subterm of

Associated Lotus transcripts 7

Transcript Name Description Predicted domains Domain count
Lj1g3v1147490.1
– PREDICTED: probable methionyl-tRNA synthetase-like [Glycine max] gi|356516237|ref|XP_003526802.1|
Domains
16
Lj3g3v3627890.1
– PREDICTED: probable methionyl-tRNA synthetase-like [Glycine max] gi|356543424|ref|XP_003540160.1|
Domains
30
Lj4g3v1218370.1
– PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502165730|ref|XP_004513672.1|
Domains
9
LotjaGi1g1v0306500.1
– Methionine-tRNA ligase, putative; TAIR: AT2G40660.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q9SVN5|SYMC_ARATH Methionine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1KB73|I1KB73_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0306500
Domains
16
LotjaGi3g1v0538600.1
– Methionine-tRNA ligase, putative; TAIR: AT4G13780.1 methionine-tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS; Swiss-Prot: sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase; TrEMBL-Plants: tr|A0A0B2SPF8|A0A0B2SPF8_GLYSO Putative methionine--tRNA ligase; Found in the gene: LotjaGi3g1v0538600
Domains
32
LotjaGi3g1v0548700.1
– Methionine-tRNA ligase, putative; TAIR: AT3G59980.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase; TrEMBL-Plants: tr|I3SGE2|I3SGE2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0548700
Domains
11
LotjaGi3g1v0548700.2
– Methionine--tRNA ligase; TAIR: AT3G59980.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein 1; TrEMBL-Plants: tr|I3SGE2|I3SGE2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0548700
Domains
10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd02799 CDD 1 14.29