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LotjaGi4g1v0002500.2

Overview

Field Value
Gene ID LotjaGi4g1v0002500
Transcript ID LotjaGi4g1v0002500.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TAIR: AT2G02500.1 Nucleotide-diphospho-sugar transferases superfamily protein; Swiss-Prot: sp|P69834|ISPD_ARATH 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic; TrEMBL-Plants: tr|I3S1B8|I3S1B8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0002500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:484523..489728) extracted from Lotus japonicus Gifu genome v1.2.

CTTCAACAAGGTTTAAAAGTGAAGATTATGATGTGCATAGTTAGTTCTTCTGAGTGATATATAGTTGGTTTAGCTGATTA CCTACGGTTAGTTTTGTTGTATAATCTATATGAGCATTGAGATTCAGTGGTATTTCCTTAGTTCCTGAATTGAATTCTCC ACTGCCTAATGAATTGGTCACGAGACAAGAATGCAATGCAATTAGTGAAAGCAAACAAAAGTAGTTCATTCACAGCAGAA ACATTTGAAATGAGGGGATTAAAGTAGCCATATACATACATGATACAGCTGAAGAAGCCAACATAACACGGTTGGTAATT TATACGACATTGAATGTCAAGTTATTATTAACCAACAGTAACACTAACAACAAAACAAAAGGAGGGGGAAATCAATCTTC TCAGTGCTCCCCAGCCTTGACCTGCAAGAAGAAGGAAGGAAGGAATTTGCAGTTGAATCAATCCCTATCTAAGTATCTTA TTGACATGAAAACATAACCTAGAAATAAAGTTGAAATGTGATTTGGATTACGCAAGCAGATGATAAAATTGTTGAAAAAT GAAAACCCTAATTAGAAGAGAAGAGAAGGGATGTGAATTCATACATGGTGGTGAGAATGAGAAGGAGCGTTCATCTGATT GTAGACTTGTTCGCCGACGAGGTAGATCCCGAAGGCAACGAGAGCGATGCCGAGACCAGGTGTGGCGTGACGCAGCTGAT TGCCGAGCATCGGATGCTTCCTCCAGCCGTCCCTCCTCCGGAAGAACTCCGCCGTATTCTTTCCTGCTCCGCCTCCGCTA GATGCCATCTTGTCCTCTCTTGTCTCTCTCTCTCTCTCTTGGCTTCGTGGTTTTATTACTTTATAGTTACTGGGCTTGGC CCAAAACAAAGTAAAGTCGTCCAGGCCCAAATCAACCAGCGTACAGTTAATTGTCTTCATCTCACACTCACCTAGTCACC TACCTTCACCTGAAACTGCTACTGTTCAATACCGTTTGAAGCGAAGGGAAGATGACAGTTGTTCAATTTCAGTCTCATTT CCTTCATTTCTCTTCATCTTCTTCGAGGTCGACCTTACCCTTCCCAACAACAATTCACAAATTCAATCCTTCTTCTTCTT CTTCTTCTTCTACACCACCACCACCAGGTAAGTCAACGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTTTCTCTCTTTCT CTTCCTTCCTTCTTCTTCTTCAATCATCATTCATAAATCCATCCCTCTTTCTTTCAGTTTCAGGTGTTAGAACTAGAAAT ATCTGTTTCAACAAAAATGCTGCTAAACCAAACCTCATTCTCTGCTCTGCCAAAGTAAGTGCAGTGCTTCCATTCAATTT AGCTAGCTTCGATTGTATATTTATATGAATCAATTAGTATGTATCATTAGGAAAATAACTAACAGATAAGAGGTTGGTTG TTGTGAATGACGCAGAGGCAGGAGGAGTTAGAGTCTGATACTGGTGTTGTCAAGGACAACAGTGTGTCGGTTGTGCTCTT GGCTGGAGGGAAGGGCAAGAGGATGGGAGTCAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTATTAGTACTCTTTA TTTCAATTCCAACTTGCTCGCATTGTTCATTTCATTGATTTTGTAAATAGGCTAGCATGCCAAAGCAGTATCTTCCCCTT TTGGGTCAACCCATTGCTTTGTACAGGTAATGTAATCACAATACCACTACTCACCTCACTCTTTCTTACTAAGGTTTCCT ATCTCTGTGCTTATTACTCATAAGTCATAATATCTCCAACACTGTTACTCCATCTCCAACCGCACGCATTGCATGATGAT GACACTAATTGTATCTGTATTTGTTTTCACATTCCATGCTTTGTTAATACCTTATCATGTTTCATTTCTTTCCACACTAA TTGGATGCTGACTACCGATATTTTGCAGTTTCTTCACTTTCTGTCACATGCTTCAAGTCAAAGAAGTCATTGTTGTATGC GATCCTTCATACCAAGACATTTTTCAAGGTTTTTTTTTCTTTGTTCCTTTCTCTCTTTAGCTTTGCTTTCTTTTAAAAAC CGTGTATTCTCCTCTTGATCATTAATCATATTTATTTCCCTCAGATGCCAAAGGAAATTACCAAGCGGAACTTAAATTTG CACTGCCCGGGAAAGAAAGACAGGATTCTGTTTACAATGGGTTACAGGAATGTGCAGTTTATTTCCTTCTTCCTTTTCTG TTTGATCTTAATGATTAATAGGTTTCATGCATTATCTGTCATTTCTCTTAGCTTATTTATATCTATGTGAAAGCCAATTT TCTTTTATTTCTTTACTCGTCATACCCAAACATTGGAAATTTGTTCTGCACTAGAGTATGAGAAACCTAACATCATGACT AAGAAAAACAAAGCAGCCAGAAATGGGCCCTTAAAAGTGGTAGCCAAAATTTTGCTAGTTGGTTAAGGTACCAGAACCAT TATCTTAGAAAACTTTTGCAAAAACTAAAGAGTAAACTAGTCGTTAAAAAATCAGTGATGATGTAACTAAAATCTAATCA ATTTGTATGTCAAGATATATCATAATAGTAATAGGTTGAGATTCTGGTCACCTACATATTCATTATATTTCAAGTTTTCA TGCACTTAAAATAATGGGCTATTCAAAATTCTGAAATTCATGTAAGATGGTGATTAACTGTTGTCAACATGACAACATCT GGAGTTGATGTTTGAATCTGCATTGCAGCAATTAAAAATGCTTAGTTTCTGTGAGCACTTTTGTCGCTCATGCTAATTTT AACTTATTTATCCCTTTGACATCTTCATCTGCTTATAACAGGCTGTTGATTCAAATTCTGAGCTTGTTTGCATTCATGAT TCTGCAAGACCTTTGGTATTATCAGGAGATGTGAAAAAGGTTTGACTTTAATGAGTTTCTCCTGCACAAGTTACTAAGTC CATTGGTCTTTATTTTTGTGAAGTTTGGCACTCATGAAGGAAAATAGCACTGTTACATTAGTTTTCTGAGAGAGGGTTTT GATGAATTCCTGTATCCCAGCAATAATATAGTCAGGGAAATCTCAACTTTATTGTTGTGTTAGTGTCAATGGTTTATATG GACCAACATTAGCACCTGAGTCTTCATAGTGACATGTTACATGTCTGTGTACAATTTATTGCATTTAAATGTATGTTTTG TCTAATTTTGGTTTGGACTTTGTTTCAAACTCTTCTTAACATCTTTAGTAAATTAACCTGCCTGCCACAGTGCCTCCCCC TTCCTGGGGGACTCTCTCTTGATTTACAATTCAATAACTTCATATTAGAGGATACTTAGATTAGCATTTGTATTCTGCTT TAGGTCCTTAAAGATGGACTGTTAAACGGAGCTGCTGTTCTTGGTGTCCCTGTGAAGGCCACAATCAAAGAGGTATTCAC TAGTTGTTAGCATACAATTTCCTCACAATTATTGTAAGTGGTTGGTGAATTTTCTTTTTCCATATTAGTGAATTCTATAA AAAATTTGAAACTCAAATGCAATCAACAACTTTATGCAAGAACCGACATCTATACATTTCCCTCTCAATAACGGAGGATG TGCTCGCTTAAATTAACTCTGAAGCTTATACTCCTACTCCAATTATAAAGACTTATCTTTAAATTCAAACTTACTGCCCC CCCCCCCCCCTCCAATTCTCTGTATCTTAAACAAAGATATGATGTTTAATGAAGTTAGTTCATCTTCCGTTCAAATCAAA AGTATTTCAGTGGTGCTTATATTCATTCAACTTTCCCTGTCAGTGTTGGATTTGTGTATTTTCCTGACTGCTAATTTACA GGTTTAATTTCAAAATTGCTCCTTCTAAAATAACTTTGATGTAACCTTAGGTTCAAATTTGTCTGGAGATTGAATTCAGT TGTTCCATTCACAGTGAGCATAACTGTGCGTAGAAGAATGTCTTCTGATCTAGATTGAAATTTTCATTCTGTGCTTGGGC TCTTATATGCATGTAAATTACTTCCTTTAGTTTAATGGACTTGAAAATAACGACATTTGTCTACTAATCTTTCTACAGGC AAACAGTGAATCATTTGTGGTTAGAACACTGGACAGGAAAACACTATGGGAGATGCAGACTCCACAGGTCAAACTGAAAA TGAGAAAAAATTATATATATATGTCATTTTTGTTTGACAATTTAGTCAATAATTTTGATGCTTAATCATTTTTATAGGTT ATCAAGCCTGAGTTGCTGAGGAAAGGCTTTGAGCTTGTAAATAGGTAGTTTCTTATTCTTATGCTTAATTTAATTGTGTG TACTTGTACCCATTAAAAGAAGTATCTTTGTTTCAGTAATTTACGAACTTAAAGAATGAAAACTAGCTATCATACTCTTT ATGAACCAAGAGCTGGACAGACACATCTCGGAGAGCAGAGGAGTCGCCCACTTTTAAATTGGAATATACACTAACAAGTT CAGATGTGTTGTTATTTACCACAATGTTGAGAAGATACATTATCTTTCAGAATCTAATTGGTACTTTATGTGCAACATTA CTTGCAGAGAAGGTCTTGAAGTTACAGATGATGTATCCATTGTAGAGCACCTTAAGCATCCTGTTTATATCACTGAAGGG TCTTATACCAATATCAAGGTATTCAAACTTTCTTATGTATTCTTTCTTGTATGCTTGATGGTTAGCCATTGCTAGTAGTG ACGCCTGTTGCAAAATGTATAAATTCATTCCGAACTGTTTTGCAGGTGACTACGCCTGATGACTTGTTACTGGCAGAGAA AATCCTGCATGAAAACTCTGGAGAAACTTCATGAAGTTCTGCCATTTAATCTTTGAAGGGAGATTAATTTTTGTACTGCA AGGTGCATGCATCTCAGGGCACAGAAAATTGTATACACATTTTTGAGTTACCTTGTATAACTTATTGAGATTTGTGTAAA AATACATGGTTCTTGCCTTTTTTTTGGCCAAAACAGTCCTTGCTTGAAACAAGGGAAATGTTTCTGCATGGAAGCAAGAA CCCACTTCTATCACCAAAGCCTGGTTCAATTGGATGATAATCATGGGATTATGACCAGGTTTGGCAAACACAATAAAGGA TTAGATTTTTCTAGTGTTTTAAATGATCTTTACATGTAACCTGATTTATCGGTCATGTTTTATTCACTTTATGATTAAAT AGTTAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0002500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACAGTTGTTCAATTTCAGTCTCATTTCCTTCATTTCTCTTCATCTTCTTCGAGGTCGACCTTACCCTTCCCAACAAC AATTCACAAATTCAATCCTTCTTCTTCTTCTTCTTCTTCTACACCACCACCACCAGTTTCAGGTGTTAGAACTAGAAATA TCTGTTTCAACAAAAATGCTGCTAAACCAAACCTCATTCTCTGCTCTGCCAAAAGGCAGGAGGAGTTAGAGTCTGATACT GGTGTTGTCAAGGACAACAGTGTGTCGGTTGTGCTCTTGGCTGGAGGGAAGGGCAAGAGGATGGGAGCTAGCATGCCAAA GCAGTATCTTCCCCTTTTGGGTCAACCCATTGCTTTGTACAGTTTCTTCACTTTCTGTCACATGCTTCAAGTCAAAGAAG TCATTGTTGTATGCGATCCTTCATACCAAGACATTTTTCAAGATGCCAAAGGAAATTACCAAGCGGAACTTAAATTTGCA CTGCCCGGGAAAGAAAGACAGGATTCTGTTTACAATGGGTTACAGGCTGTTGATTCAAATTCTGAGCTTGTTTGCATTCA TGATTCTGCAAGACCTTTGGTATTATCAGGAGATGTGAAAAAGGTCCTTAAAGATGGACTGTTAAACGGAGCTGCTGTTC TTGGTGTCCCTGTGAAGGCCACAATCAAAGAGGCAAACAGTGAATCATTTGTGGTTAGAACACTGGACAGGAAAACACTA TGGGAGATGCAGACTCCACAGGTTATCAAGCCTGAGTTGCTGAGGAAAGGCTTTGAGCTTGTAAATAGAGAAGGTCTTGA AGTTACAGATGATGTATCCATTGTAGAGCACCTTAAGCATCCTGTTTATATCACTGAAGGGTCTTATACCAATATCAAGG TGACTACGCCTGATGACTTGTTACTGGCAGAGAAAATCCTGCATGAAAACTCTGGAGAAACTTCATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0002500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTVVQFQSHFLHFSSSSSRSTLPFPTTIHKFNPSSSSSSSTPPPPVSGVRTRNICFNKNAAKPNLILCSAKRQEELESDT GVVKDNSVSVVLLAGGKGKRMGASMPKQYLPLLGQPIALYSFFTFCHMLQVKEVIVVCDPSYQDIFQDAKGNYQAELKFA LPGKERQDSVYNGLQAVDSNSELVCIHDSARPLVLSGDVKKVLKDGLLNGAAVLGVPVKATIKEANSESFVVRTLDRKTL WEMQTPQVIKPELLRKGFELVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLLAEKILHENSGETS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 19 19 - –
PANTHER
PTHR32125:SF4
79 312 234 2.2E-106 –
PANTHER
PTHR32125
79 312 234 2.2E-106 –
Gene3D
G3DSA:3.90.550.10
80 311 232 1.2E-76
IPR029044
Hamap
MF_00108
87 307 221 40.047
IPR001228
Pfam
PF01128
88 308 221 4.5E-57
IPR034683
SUPERFAMILY
SSF53448
88 307 220 8.35E-53
IPR029044
CDD
cd02516
88 303 216 3.12669E-92
IPR034683
TIGRFAM
TIGR00453
89 307 219 1.9E-66
IPR001228
ProSitePatterns
PS01295
184 191 8 -
IPR018294

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008299
Biological process Isoprenoid biosynthetic process The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Subterm of
GO:0050518
Molecular function 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity Catalysis of the reaction: 2-C-methyl-D-erythritol 4-phosphate + CTP = 4-CDP-2-C-methyl-D-erythritol + diphosphate.
Subterm of
GO:0070567
Molecular function Cytidylyltransferase activity Catalysis of the transfer of a cytidylyl group to an acceptor.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0002500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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