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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0012300 |
Transcript ID | LotjaGi4g1v0012300.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | S-type anion channel; TAIR: AT1G62280.1 SLAC1 homologue 1; Swiss-Prot: sp|Q5E930|SLAH1_ARATH S-type anion channel SLAH1; TrEMBL-Plants: tr|I3SDT0|I3SDT0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0012300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1518462..1523266) extracted from Lotus japonicus Gifu genome v1.2.
CTTTATTTGCTCACTTCAAAAGTTAATTCACTTTACGGAACTGTTTCCCCATTTTGAAATCAATGTTGGCTAGCACTATA AATATCAGGACAAAATGAGAGAACTAAACATCATTTTTACGAATAGCTTTACAACTATGATTAAGATGGGTGAAGCTGAG AGCAAGCCATCAATTGAGGTTGTGGTATGTGCTAATTCTATGAACAATACTAGTGCAAACAACCACCAGTCACACCCATC ACATTCACCAATCTTAACCAAGATCCATGCTGGCTACTTTTTCATTAGTCTTTCATTTGGTGCACAAGCTTTGCTGTGGA AGAGTTTGAGTGAACGTAACAAGGACTCACAAACTCTATGGCAAAGTTTTAATTTGATGCCACATGTTGCATTTCTACTA CTATGGTCTCTTTCAGTGCTCATTGCAACTACTCTGTCTTTTCTTTACATGCTCAAATGCATCTTCCACTTTGATATGGT GAAGGAGGAGTTTTCACACTGTATTGGAGTGAACTACATGTATGCTCCTTGGATTTCATGGCTTCTCATGCTTCAATCAG CACCAATGATTGTTCCCAGAACTTTTCACTACCAATTTCTCTGCTTGGCCTTTTCATTTGCAATATTGCTGCTTGATGTC AAACTCTATGGACAATGGTTCACAACAGAAAAGAGGTTTCTGTCAGTGGTTGCTAACCCTGTGAGCCATGTTTCAGTTAT AGGGAACTTGGTGGCGGCTCAAGTGATAACAGAAATTGGTTGGAAAGAGTGTGGGATTTCAATGTTCTCACTTGGAATGG TTCATTATTTGATTCTGTTTGTGACACTGTATCAACGTTTGACAAGTAGCAACCAGTTTCCCACAGTGCTGAGGCCAGCT TACTTCTTGTTTTTTGCTGCACCAAGCATTGCAAGTTTGGCTTGGAAATCCATCACAGGTGGTTTTCTCATCCCATCAAG GATGCTGTTCTTTCTGTCATTGTTCCTTTTCATGTCTCAGGTAGGTCCCTAACTAACTGCTTCTTTGATTCAAGCTCCAC AGTTGATCATTTTATTTGATACTTAGATATCCAAACAGTGCAGTCACCTCTTGATTTCAATTCCTGACTATCAGGAGAAT AATCCTGCATTCACCTATTCAAGTATTTTTAGCCATCCAATTTTACTCGAACGGCTTACATTCCGAGTTACTGTTTCAAG TTACTTATTACAATTTAAAATACGTCTGAGAAGTTCAGACTCAGACGGCTAAAAAGGGACACCTAATTTTTCTTTTCATC TATCTCTTCATCATGTATCATATCTATTATTTCTCTATCTTATTTTCTTTTTTCAATCTAGGTGTCTAGGGAGTGTGTGC ACTGCAGACATCTAACAATCATTCTCCTTTTTTTATCCCTTTTCATTGTAAGAGTAAATTACCTTTTTTTAATGCAGGCT TGCAGACCAAACTTCTTCAAGAAATCTATGAGAAAATTAACAGTCACTTGGTGGGTGTGCTCATTCCCTTTAACCTTCCT TGGTCTAGCTTGTGCTGAATATTCTCAAGAAGTGGAAGGTAGCATGGCCTCTGCGTTAATGCTGGTGATATGTGTTGTCT CGGTGCTGGTTTTCATTTCTCTGATGCTCATCTCTGTGCTCAAAATTGAGAGGCTGCTGCTAAAAAAAGCTCCTATTAGT AACTCTAAATGAAGTCTCTTTAACCCAAAAACTGGAATTATACCGATAAACTGCAGAGCTAAGAGCAAATACTCTTGTTT CCCATGTAAGGAAGCGAATGAAAGTACACCAACTTGTCTGAATTATACCCTTTATTCTTCTTTACAATATCTTCTTCATG AAAGAAGAACATTAGGTAGAAGGATAATGATAAATAAACACATTTTTATGGTACTAATCAAACACTAATGGTTTCTTTTG AAACTATCAAACACTAATGTTTGTCATAAAGAAAAATGGTAAAATAATTGTCTAGGCAAAAGAAATGAGGAGGAGGATGA CCAACATGCCTTGAAATTATTGATAGACATCCACAGTTCCACACAGTGCACACATCCAATTGATATGGAGAAATAAAAGT GAAAGAAATAAATGATTTGATATATAATGGATGCATAAGAGAAAAGAGATGGAGAAAAAAAAATGTATATTGAATGTCTG CATCTACTACTTCTTAATCTTCCACAACTGTAGCTAAATAACCGCCAATTACACATCGACACGTGTCCTGCTTTTACTTA CTTTTTTTTCCTTGATCGATAGGGCCAGAACGACGTCGTTCTCCATTCATCTCTGTTCTCATGAACCCTAAGCTGGCAAT CACGTGTTTGCTCTCCCCTTCTACCCACTCCATCGTACCATTCATCATCTTCCGTTTCTCTTCCGCCTCCATTCGTGCAT AACTTTTCTTTGATTTGTCTCTTCTACGGCAGTACCAACGTCACATATATCACGCGTTCCAGCCAAGATCGACGTCACCC TGACCAGAAGATCTGCTTTCCACGATCTGCGGCTTCTTCTCATGGCTTCTCCGGTGATGGCTTTCACGTCAACCCTTCAA CCATTTCGTGGGTAAGCTTCGGAACAGTTCTCCATTGATCTTGAACTCACTGTAGCTTAGCACATCTCTTACGTTTCTTC CTGATTTCGTCCTTTATTTGAATTTTTTATCTGATAGTTTTGATTAGATTGAGGGATTTGGTACTTGCTTTGCAACCATT ACCTATGGTTAGATTGGGTTCATTAGTTACTCATGCATCTGTTATTTCCATTCTGATATGCATCTGTCATTTCCACTCTG ATTTGAAGTTGGGATTAGGTTTTTAGGTCTAGGGTTATAGGTGGATTGCACAACCTATTCTCCTTTGAATTTTTTATCAG ATCCCCTTGCCTATAAATTCTCACACAACCCTCACTCCAGCACCATTTCCATTGTGTGTGTTAGTTAGTAATTTAGCATT TCTATCTGGTGTGTGTTAGTAACTTAGCAGTTCAAGTCACAGTAGTACAACTCAAACCATATGTTTAATTGTTCTAACCT TTTCTTTGTATGTCTTTTACAGCTGGGACAGAATTGCAGAGAAACTGAGTTTCATGTTGGTCTTTGGAGATTTAGTGTGG ATTGGTATGACTCAATGCAGGAAGAGAACTGTTCAAAAAATGTGGAAGTCTGTGATACATGGCAAGTCCTTGCAGGTTAG GTTTCTGTATTTTGAAGATTTACTATTATTTCTAAAATTTTGGTTTTGTTCTAAAGCTATATATGTTTTTCAATGGCAAG TCCTTGGCAGGTATTGTTTTTCAATGCAGACGCTTAAGGATGATTGAGGGGAGCTCAAAGTTGCAAAGCCCTCTCTCAGT CCTTCTCTCCCTTGATTTCCTTCTATATGTATATATGTTATCCCAGAAGATTTCTTATAACTGGTGCATGTATTTATGTA AACTCATACTCACAACATCTTTGGAAGAAAATGATTGTGAATATAACCTGAAGGAAACCAATTCAATGATTTGAAAGGCT TTAGTTAAATTACTTAATTTCAAAGCTGGGACATAGAAATATATAGGGAATGTTTAACATTGGCATGGTATAGCATTGGC AGATTCACTTACATGTTAGTAATACAATTTTCTTATGATGCAAAAGTCTGTTTCTATTTGCTTCAAATAATTACAAATGT TTTAGACATTATAGAGAAATGTCTAGGGGTGTAAGAGGGCTTATCTTCTTTTGAAACTCTCTTTAGCTTCAAGCATAGGT TCTTACAATTTTGTGCTACTTCAATTTCTCTGTTCTTGAGGAGTATTGGTACATGGGCACATGAACTTATCAAGAGAAAA GAAAAAGGGGATTGGAGTAGGGGATGCTTCTATTCTGTATCTTCTGGCTTCTAACTCTTCATTGTATGAGCTAGCCTTGA ATTTATCTTTGTTTCAAATGGATTGTTCCCTTGGTGAAGGTAGAAGATTTTGAAGCCTTTGTGGAGAGTGAGCAATCACT CTATGACCGTCTCTTGGTGAAGTAGTTTTAGCTACAGCAACAATATTTGAACAATCATCTACTTCACCAACTGAGTCATG AGAGTAGTTTTAGCTATAGCAGACTTTTTCTTTACTATAGGTAAGGGGGATGTCAAAAGAGTTGTGTTTTATGAGAGTAG TCTTTGAAACAGATTGCAAGTTAGTGGAAAAATAACTCCTATTTCTATATTTTATACTAACCTATCACTTCTTTCTTTCT GAGTCGTGGACAGCTATTGATTGCTTACATCTATTACATAGTCTCTATATTATTGTTTAGTTATGGTCTACCAATAAAAT AGCATGAATTTAAAGCTTGATATTGTTTTTTTCTCTCTTGGCCCCTTTATTTTTATTCTATAGCCTCTTTATTTCTAATT TTGAAGAGATGAGTTCTGATCTGTTGCTGAGAAATTCTCTGATGGTTTTATGTTTTATTGTGCAAGACAATAAAGAGAAA ATAGCGAATTCATCAAAAGTTTAAAGTGTTGTCACGGAGCAACTGAACGTTGTAGTTTTAGTTTTTTATAGTCAATGTCA ATCCTCAGACAGTTTGTTTCTAATTAGTGACTTCTATTATGTTCATTGGTGGATGCATGCAATCGTTCTACTCATCCTAG AGGAGGACTTTTATGTAATTCAAGGTTAAGATGAACATTTGTAATGGAGATGTGGATCAAGTTATCTAAGGGGGGCATGC AATATCAAATTCCAATTGTCATTGTTAGTAACAGATTCAAGTGTTTTTATTTTTAAAAAATATATAAGTAGTCTTTACTG AGATG
CDS sequence (LotjaGi4g1v0012300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGAACTAAACATCATTTTTACGAATAGCTTTACAACTATGATTAAGATGGGTGAAGCTGAGAGCAAGCCATCAAT TGAGGTTGTGGTATGTGCTAATTCTATGAACAATACTAGTGCAAACAACCACCAGTCACACCCATCACATTCACCAATCT TAACCAAGATCCATGCTGGCTACTTTTTCATTAGTCTTTCATTTGGTGCACAAGCTTTGCTGTGGAAGAGTTTGAGTGAA CGTAACAAGGACTCACAAACTCTATGGCAAAGTTTTAATTTGATGCCACATGTTGCATTTCTACTACTATGGTCTCTTTC AGTGCTCATTGCAACTACTCTGTCTTTTCTTTACATGCTCAAATGCATCTTCCACTTTGATATGGTGAAGGAGGAGTTTT CACACTGTATTGGAGTGAACTACATGTATGCTCCTTGGATTTCATGGCTTCTCATGCTTCAATCAGCACCAATGATTGTT CCCAGAACTTTTCACTACCAATTTCTCTGCTTGGCCTTTTCATTTGCAATATTGCTGCTTGATGTCAAACTCTATGGACA ATGGTTCACAACAGAAAAGAGGTTTCTGTCAGTGGTTGCTAACCCTGTGAGCCATGTTTCAGTTATAGGGAACTTGGTGG CGGCTCAAGTGATAACAGAAATTGGTTGGAAAGAGTGTGGGATTTCAATGTTCTCACTTGGAATGGTTCATTATTTGATT CTGTTTGTGACACTGTATCAACGTTTGACAAGTAGCAACCAGTTTCCCACAGTGCTGAGGCCAGCTTACTTCTTGTTTTT TGCTGCACCAAGCATTGCAAGTTTGGCTTGGAAATCCATCACAGGTGGTTTTCTCATCCCATCAAGGATGCTGTTCTTTC TGTCATTGTTCCTTTTCATGTCTCAGGCTTGCAGACCAAACTTCTTCAAGAAATCTATGAGAAAATTAACAGTCACTTGG TGGGTGTGCTCATTCCCTTTAACCTTCCTTGGTCTAGCTTGTGCTGAATATTCTCAAGAAGTGGAAGGTAGCATGGCCTC TGCGTTAATGCTGGTGATATGTGTTGTCTCGGTGCTGGTTTTCATTTCTCTGATGCTCATCTCTGTGCTCAAAATTGAGA GGCTGCTGCTAAAAAAAGCTCCTATTAGTAACTCTAAATGA
Protein sequence (LotjaGi4g1v0012300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRELNIIFTNSFTTMIKMGEAESKPSIEVVVCANSMNNTSANNHQSHPSHSPILTKIHAGYFFISLSFGAQALLWKSLSE RNKDSQTLWQSFNLMPHVAFLLLWSLSVLIATTLSFLYMLKCIFHFDMVKEEFSHCIGVNYMYAPWISWLLMLQSAPMIV PRTFHYQFLCLAFSFAILLLDVKLYGQWFTTEKRFLSVVANPVSHVSVIGNLVAAQVITEIGWKECGISMFSLGMVHYLI LFVTLYQRLTSSNQFPTVLRPAYFLFFAAPSIASLAWKSITGGFLIPSRMLFFLSLFLFMSQACRPNFFKKSMRKLTVTW WVCSFPLTFLGLACAEYSQEVEGSMASALMLVICVVSVLVFISLMLISVLKIERLLLKKAPISNSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 58 | 58 | - | – | |
PANTHER | 35 | 382 | 348 | 1.3E-161 | – | |
PANTHER | 35 | 382 | 348 | 1.3E-161 | ||
Gene3D | 53 | 377 | 325 | 4.7E-54 | ||
TMHMM | 53 | 75 | 23 | - | – | |
Pfam | 57 | 366 | 310 | 3.1E-35 | ||
Phobius | 59 | 78 | 20 | - | – | |
Phobius | 79 | 97 | 19 | - | – | |
TMHMM | 98 | 120 | 23 | - | – | |
Phobius | 98 | 120 | 23 | - | – | |
Phobius | 121 | 140 | 20 | - | – | |
TMHMM | 133 | 153 | 21 | - | – | |
Phobius | 141 | 160 | 20 | - | – | |
Phobius | 161 | 165 | 5 | - | – | |
TMHMM | 163 | 182 | 20 | - | – | |
Phobius | 166 | 186 | 21 | - | – | |
Phobius | 187 | 197 | 11 | - | – | |
TMHMM | 195 | 217 | 23 | - | – | |
Phobius | 198 | 218 | 21 | - | – | |
Phobius | 219 | 229 | 11 | - | – | |
TMHMM | 227 | 246 | 20 | - | – | |
Phobius | 230 | 249 | 20 | - | – | |
Phobius | 250 | 260 | 11 | - | – | |
TMHMM | 258 | 280 | 23 | - | – | |
Phobius | 261 | 280 | 20 | - | – | |
Phobius | 281 | 285 | 5 | - | – | |
Phobius | 286 | 304 | 19 | - | – | |
TMHMM | 290 | 309 | 20 | - | – | |
Phobius | 305 | 315 | 11 | - | – | |
Phobius | 316 | 333 | 18 | - | – | |
TMHMM | 316 | 333 | 18 | - | – | |
Phobius | 334 | 344 | 11 | - | – | |
Phobius | 345 | 370 | 26 | - | – | |
TMHMM | 348 | 370 | 23 | - | – | |
Phobius | 371 | 386 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Cellular ion homeostasis | Any process involved in the maintenance of an internal steady state of ions at the level of a cell. | ||
Molecular function | Voltage-gated anion channel activity | Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0012300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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