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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0013500 |
| Transcript ID | LotjaGi4g1v0013500.6 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase 1; TAIR: AT1G11820.2 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|O65399|E131_ARATH Glucan endo-1,3-beta-glucosidase 1; TrEMBL-Plants: tr|I1KNE6|I1KNE6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0013500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1706083..1709599) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAAACACTAAGCTCATCCTTCTCCTCCTTCACATCCTCTTCCTTTCCACTTCATCACTAGGTAAAATCAAACACTT CCCAAACAAACTCTTCAACTTTTGTAATATTAGCAAGTAGCAACCGCCACAAACTTAACTCTGCTTCTTCTTCTTCTCTC TGCTTTTGCATTAATTTCAGCAGCTCAAGTGTCACATTCACATTCCAATGCTCATCCTTTCCAAAATGAACAAGCTGAAG CTGAAGAAGAAGAAGAGAAAGTACCATTCGTGGGTGTGAACATTGGCACAGACGTAGCAAATCTCCCACCAGCTTCAGAG ATAGTGGCGTTTTTGCAGACACAGAAAATCACACACATTCGTGTCTACGACGCCAACACAGAAATCCTCAAAGCCCTTTC CGGTACCAAAATTCGCGTCATCATCTCCATCCCCAACAACCAGCTTCTCGCCATCGGCTCCTCCAACACCACCGCCGCTT CATGGATCGGCCGCAACGTCGTCGCTTTCTACCCACAAACCCTCATCACCGGAATCTCCGTCGGCGACGAGGTTCTCACC ACCGTCCCCTCCTCCGGCCCTCTCCTCCTCCCCGCAATGCAATCCCTCTACTCCGCCCTCGTCGCCTCCAACCTCCACCA GCAAATCAAAATCTCCACCCCTCACGCCGCCTCCATCATCCTCGACCCTTTCCCACCTTCCCAAGCTTTCTTCAACCAAA CCTTCTCCTCTGTGATTCTCCCTCTGCTTCAGTTTCTCTCCAAAACTGAGTCCCCTTTGATGATGAATCTTTACCCTTAC TATGTCTACATGGAGAACAAGGGTGTGGTTCCTCTGGACAATGCTTTGTTCAAACCTGTAACACCTAATAAGGAAATGGT GGATCCCAACACCTTGCTTCACTATACCAATGTGCTCGACGCGATGATCGACGCTGCTTATTTCTCCATGAGGATTCTCA ATGTCACTGATGTTGTTGTTCTTGTGACAGAAACAGGATGGCCTTCAAAGGGTGATTCTAAAGAGCCTTATGCTACAAAA GACAATGCTGACACTTATAATTCCAATTTGATAAGGCATGTTTTCGATCGTAGCGGAACCCCTTTGCATCCGGAAACTAC TTCCAGTGTGTTTATCTATGAGCTTTTTAATGAGGATTTGAGGTCTCCGCCGGTTTCGGAGGCCAATTGGGGGCTGTTTT ATGCCAACACTACGGCGGCGTATTTGCTTCATGTGTCCGGGATAGGGAGTTTTATGGCGAACGACACGACCAACCAGACT TACTGCATTGCCATGGAGGGCTTTGATACCAAGACATTGCAGGCCGCGCTGGATTGGGCGTGTGGGCCGGGGAGGGCGAA TTGCTCGGAGATTCAGCCCGGAGAGAGTTGCTACCAGCCTAACAATGTGAAGGGGCATGCCTCTTATGCGTTTGATAGCT ATTTCCAGAAAGAAGAGAAGGCTGCTGGGACTTGTGACTTCAATGGAGTAGCTATGATCACTACCACAGACCCCAGTAAG TGCCTGCATACAAGAATTCTACAGTTTTTTTTATTTTATTTTATCAATTTAGTGTTTTGATGTTGCCATGGTGTTCAATT ATGCTGTTAAGCTTGATTCTTGATTGAAATTTGCTGCTAATTGATGCATGAGGAATCTGGAGCTTCAAAATTACATAGTG AATGTTTGGATACTCGTTTGAAAATTATGGTGAAGCCAAAATAATGGTCAATAGAAGCCACTTCCCTTAGTTTTTGCTTC TATCTACCACGATTTTGGCTTTACCGTATTTTCAAACATGCACATATTGACTTATGCAGGGTTTATAAGAGTTCATTTGA ACTTATCTCATATCATAAACACTTATGCGAGTGCTTAGTAAGGTTACGAAAATAGCTTATGATCTACCTAGTTTTTTTGA GCTTATTTTAAAAAGTTTTTAATGGTTAAATGACAGAAATATAAACAAAAGCAGAAAAATAAAGGGAAGAATTCAGAAAA AATTGGAGAAGAAGGTGTTAGAAGTCCCACATTGCCTAGAGATAAGGCCAATCAAGTGTTTATAAGGGTTGTGCAAACCT CAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATATGGTATCAGAGCCTATCCTAGATCCATT TGTTGTGTGGAGACCTCCCATATTTGGGCCACCCGTTGTTGTTCCCACGTTCCAGTCTGTTCAATCCTGGACGTGAGGGG GTGTGTTAGAAGTCCCACATTGCCTAGAGATAAGGCCAATCAAGTGTTTATAAGGGTTGTGCAAACCTCAACTCTTGAGC TAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATAGAAGGATCTACATTGATAATACTTGAAACTTGCAGAAAAC AAACTAAGCTTCTAGCAATCGTTATCAGATTAACTTGAATAAGTGCTTATACCTATCTATAAGTTATTTCGAGCTTGTTT TGATAAGCTTCTGTATAGGCACTTATAAGTTTTTTTTTGCCAAAAGTGCCTAATTACATTTACTCAAGCTCACCCTCGGT CCTTGAGGAAGAAAGGCCAACATCTTTTCATTTTTATTCCCTATTTTCATGTGGCTATGTTATGCGTTTAAAATCCTTCT TGTTTTGCCTAATTAGGTTACTTTGTGGTAATAAAGTAGAATTAACCTTTAAAGAGTAATGAAATGGAAGTCTTTGTGTT TTTATTTTTTCTGTAAGTAGGAAAGTAAAAAGTCTTGTGTTGTGACTACTGTAAGAAACTTTAAGATTGGAAAAGGGGTG ATGATTTATGATTTAAATATAGAACTATGGCGAGGTAATGATTCCTGAAATGAAATGCATTTGTGTGGCACCCACACACT TCAAAAGCACTTTTTATGTAAAAAATTGAAATTGAAATGAAAAAAGTGCTTTGCCATAGAGTAGTACCCACACTCCATGA GTTGGATGTTGGTTTGTCATTTTGTCTGAGAGCACCTTGTTTCCCTGACAATTGCAAAGATTCTGGACCGTGTTTCTAGA TTACCTTCACATAGTACTAATTTTACTTGCCTTCCAATTTTTCACTGGTATATAACACTTGTGACTATTTTGCATGTTTT TCTCTTTGTTGTGTTGTGTCTATTTCAGGTATAACACTTGTGACTAATATTATTTTTTGTTTTTTGTGGGGAATACCTTT GCAGGTCACGGGAGCTGTATATTTCCTGGAAGGTAAGAAACCTTGTCTTTGTTTTATTATCCTCAAAATCTGAATAGTGG AATTTTTATTTAACAAGTGTGAGTCTTTACCTAAGTGTGATTCCTCACTCTATGTGATGCAGCAAGAAAGTAAGCAACGA GACAAAGGAAGTGGTGAACTCTACACAATCAAGCAATGCAGGGGAGAAGTTAAGGTTCAGAGCAACCTTCAGCAGCATCA AAACAAATGTAGTTAACAACATTTTGCACATTTTATTGGCTGCATATCTCCCCACTTTGTTGTTAGTCCTTTTGTAA
CDS sequence (LotjaGi4g1v0013500.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAACACTAAGCTCATCCTTCTCCTCCTTCACATCCTCTTCCTTTCCACTTCATCACTAGCCAATGCTCATCCTTT CCAAAATGAACAAGCTGAAGCTGAAGAAGAAGAAGAGAAAGTACCATTCGTGGGTGTGAACATTGGCACAGACGTAGCAA ATCTCCCACCAGCTTCAGAGATAGTGGCGTTTTTGCAGACACAGAAAATCACACACATTCGTGTCTACGACGCCAACACA GAAATCCTCAAAGCCCTTTCCGGTACCAAAATTCGCGTCATCATCTCCATCCCCAACAACCAGCTTCTCGCCATCGGCTC CTCCAACACCACCGCCGCTTCATGGATCGGCCGCAACGTCGTCGCTTTCTACCCACAAACCCTCATCACCGGAATCTCCG TCGGCGACGAGGTTCTCACCACCGTCCCCTCCTCCGGCCCTCTCCTCCTCCCCGCAATGCAATCCCTCTACTCCGCCCTC GTCGCCTCCAACCTCCACCAGCAAATCAAAATCTCCACCCCTCACGCCGCCTCCATCATCCTCGACCCTTTCCCACCTTC CCAAGCTTTCTTCAACCAAACCTTCTCCTCTGTGATTCTCCCTCTGCTTCAGTTTCTCTCCAAAACTGAGTCCCCTTTGA TGATGAATCTTTACCCTTACTATGTCTACATGGAGAACAAGGGTGTGGTTCCTCTGGACAATGCTTTGTTCAAACCTGTA ACACCTAATAAGGAAATGGTGGATCCCAACACCTTGCTTCACTATACCAATGTGCTCGACGCGATGATCGACGCTGCTTA TTTCTCCATGAGGATTCTCAATGTCACTGATGTTGTTGTTCTTGTGACAGAAACAGGATGGCCTTCAAAGGGTGATTCTA AAGAGCCTTATGCTACAAAAGACAATGCTGACACTTATAATTCCAATTTGATAAGGCATGTTTTCGATCGTAGCGGAACC CCTTTGCATCCGGAAACTACTTCCAGTGTGTTTATCTATGAGCTTTTTAATGAGGATTTGAGGTCTCCGCCGGTTTCGGA GGCCAATTGGGGGCTGTTTTATGCCAACACTACGGCGGCGTATTTGCTTCATGTGTCCGGGATAGGGAGTTTTATGGCGA ACGACACGACCAACCAGACTTACTGCATTGCCATGGAGGGCTTTGATACCAAGACATTGCAGGCCGCGCTGGATTGGGCG TGTGGGCCGGGGAGGGCGAATTGCTCGGAGATTCAGCCCGGAGAGAGTTGCTACCAGCCTAACAATGTGAAGGGGCATGC CTCTTATGCGTTTGATAGCTATTTCCAGAAAGAAGAGAAGGCTGCTGGGACTTGTGACTTCAATGGAGTAGCTATGATCA CTACCACAGACCCCAGTCACGGGAGCTGTATATTTCCTGGAAGCAAGAAAGTAAGCAACGAGACAAAGGAAGTGGTGAAC TCTACACAATCAAGCAATGCAGGGGAGAAGTTAAGGTTCAGAGCAACCTTCAGCAGCATCAAAACAAATGTAGTTAACAA CATTTTGCACATTTTATTGGCTGCATATCTCCCCACTTTGTTGTTAGTCCTTTTGTAA
Protein sequence (LotjaGi4g1v0013500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANTKLILLLLHILFLSTSSLANAHPFQNEQAEAEEEEEKVPFVGVNIGTDVANLPPASEIVAFLQTQKITHIRVYDANT EILKALSGTKIRVIISIPNNQLLAIGSSNTTAASWIGRNVVAFYPQTLITGISVGDEVLTTVPSSGPLLLPAMQSLYSAL VASNLHQQIKISTPHAASIILDPFPPSQAFFNQTFSSVILPLLQFLSKTESPLMMNLYPYYVYMENKGVVPLDNALFKPV TPNKEMVDPNTLLHYTNVLDAMIDAAYFSMRILNVTDVVVLVTETGWPSKGDSKEPYATKDNADTYNSNLIRHVFDRSGT PLHPETTSSVFIYELFNEDLRSPPVSEANWGLFYANTTAAYLLHVSGIGSFMANDTTNQTYCIAMEGFDTKTLQAALDWA CGPGRANCSEIQPGESCYQPNNVKGHASYAFDSYFQKEEKAAGTCDFNGVAMITTTDPSHGSCIFPGSKKVSNETKEVVN STQSSNAGEKLRFRATFSSIKTNVVNNILHILLAAYLPTLLLVLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 503 | 479 | - | – | |
| PANTHER | 27 | 486 | 460 | 2.7E-256 | – | |
| PANTHER | 27 | 486 | 460 | 2.7E-256 | – | |
| Pfam | 44 | 363 | 320 | 7.1E-74 | ||
| SUPERFAMILY | 44 | 363 | 320 | 1.23E-79 | ||
| Gene3D | 44 | 364 | 321 | 3.7E-110 | – | |
| ProSitePatterns | 278 | 291 | 14 | - | ||
| SMART | 380 | 465 | 86 | 2.6E-48 | ||
| Pfam | 381 | 452 | 72 | 8.8E-20 | ||
| Phobius | 504 | 524 | 21 | - | – | |
| Phobius | 525 | 525 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0013500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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