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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0026300 |
| Transcript ID | LotjaGi4g1v0026300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Stress up-regulated Nod 19 protein; TAIR: AT5G61820.1 stress up-regulated Nod 19 protein; TrEMBL-Plants: tr|A0A072UNX5|A0A072UNX5_MEDTR Stress up-regulated Nod 19 protein; Found in the gene: LotjaGi4g1v0026300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3198933..3203097) extracted from Lotus japonicus Gifu genome v1.2.
GTCTTTGTTTTCTACGCCGTATTAATAAACTTATAAATTAATGAAACATTTTAAGTCTAGAATGGAACGTTTTCTCTTGA GAAGGTGTCACCCTCCTTTGGTCTATAAATTAATGAATTCACTTCTTTGTTTATGGACTGTCACTCCATACCCCCAAGCA GTGTAGTGGTTCTCGTTTTGAGGTACGCCATTGAAGCTATCTCATCTTTCTTCTACACTTGTATATATAAACATCATCAT AATTTACAATTTTGAACAACACTTAGCATCGTGTGCATGCTTCTTCAATTCTACCTCTCATGTTGGATTGGGTATTGGAC TGTTGGTTGTTTCTGAATTTATCCTCCAGTTTTTATTTATATAGTCTTTGACTCTTTGTCTGTTTGAGATGAGATGACCC AAATCTTATTTGATGTGAAGTTAAGCTTTTTACTTTCCTCTTATGCTCATGTGCTTGCACAAATACCACACTTTATCCTT TTGTAACTTTATTGGGCCAAAGGAGATGTGTTCACAATTACGGGGATCATCACACGGCCGTCTGGTTACAATATTGTTGA AAAGACTTTTGACAATGAGATGTTTAAAATTATGAAAGATCATCACATTAGGCTAAAAAGCAAACCACAAGTGAATTGAT GAACATCACATATTTCACTCAAACTTTAAGGTATTAACAGTATGAATCATCAAACTTGTAAACTATTCAAAACTTTCTAA TTCTTCCAATAAGTAACTCACTCACACTTGATTGATATTACAACACATTTTCAGTTTTTCACCCCTTTTCCCATGATAAT TATTAATACAACGACAGATGCTGATTATAGCTTTTTTGGTTAATTTTTTCTGTTGGCCTTACGTTTATATGATAAGCTTC TTCAATGTTGATTTTTCATGCTTTCCCAATCAGGCTTTTCTAGTTTATTTGATTGATTCAACCTGAAAATCCTGTTTGGT TAGTCACTTTGTTGTCTGCATTTAGATTTTAGATTTCCCTTTTGGTCATTTCTGATTGCAGAATTTTCTTGTACTGTGTA GTCGGTGAACTTTATGAAGATAATGCATTCTTTTATAATCCACTAGCATTTGTTTTTATAAAAATCAATTCTGAGAAGCA GAAGTTTTTTCCCAGAATTGATTTTGTCTTTAGAATTAATTGTAGAATAATTTTCACACATGCACAACATCATCTATTCG ATTTATTTCTTAATCACTAATTAGTTGATTTCTAAATACTAATAAAGAATTTGCTAACAGATCAACATGGGTTCTGTAAC TAGAAATTTGGTGCTTTCTTTGGCATTACTTCTGGCAACATGCTCTAGTGTTTTGGGGAGAACTGAGAACAATATAAAGT CAGCTGTTTTTCTGTCCCCCAAGTTTGAACTTGGAGCAGGATCAGTTATCAATAGATATTACTATGATATTGATTTTCCA AGAGGCCATATAGCACTGAAGAGTTTCAATGCTGAAGTGATTGATGAAGCTGGGAACCCTGTGCCTCTCCATGAAACTTA CCTTCACCATTGGGTTGTTGAAAGATACCATCAAAGTAAACATGTGACACAAAAAGACACAAAATATGATGATGGGCATC GAATGCTTCAAGAGTCTGATGATTTTGTCATTGTGAGGAACAGTGGAATATGCCAGAACAATGCTCTTAGTCAGTATTAT GGACTTGGTTCTGAAACTAGAGGAACAGCTACAGACATTCCAGACCCTTTTGGCATAGAAGTGGGAAACCCTGACGAAAT TCCAGAAGGGTATGAGGAGAAATGGATGCTGAATGTGCATGCCATTGATACAAGAGGCGTAGAGGATAAGTTGGGGTGCA CTGAGTGCAGGTGTGACCTTTATAATGTCACAAAGGATGAACATGACAGGCCTTTGAGGCCAGATTATGTTGGAGGTTTG TTGTGTTGCTATGATTATTCACAGTGTAAATTGAGGGAAGGCTTTGAGGTTGAGAGCACAAAGAGAAGCCTCTACCTAAG ATACACAGTGAAATGGGTTGAGTGGGACAATTTTGTAGTGCCTGTTAAGATATACATAATTGATGTGACTGATACTTTGA AGATATCTGATGAATCCAAAGGAATAACCAGCTCAGATCATAATTGTGTGGTAAGTGAGTTCATCAAGAAACAATATATT AGTTCCTTGCTTTATTGGGTGTAATTGAGCACTAGAGATTTATTTGTTAATTGTTACAGGTTGAGTATGAAGTTGAACCT TGCAGCACAGACCATAAGGATGGTAATGGCTGTCATCATGTGAAGAGGACAAGCCTCCCAATGCAAACTGGTGGTTATGT AATCTATGGTGTTGCTCATCAGCACTCTGGGGCGGTTGGATCAACTCTTTATGGACAGGTTATGCTCATTCAATAGTTAC AACCATTGAACCTTAGTTTTACAACTCTTTTCTCTTCAGTGTTTCTGTGTTTAGTTTCCAATTGGGGATCACAAATGATT CTTTGCTTCCGCATTTACAATTTTTTGTGTTTTTAAATATTTGATTCCTCAGTTGATTTTAGCTCCAAAGTCAGTTAGGA TAAAGTTACAAATCCTAGCTTCTGCGGTGGGACGTAATCACTTGGGGGATTTCACCACATTATCCAAAGGAAATCAGTTT CTCATAAATTTTTCTAAACATAAATAACTTTATTTTCAACTAGTTTTTACTTTAACTAGTGAGGATGGAAGCTGTGATGT TGATTTCTTAATCCTTAGCTTTTATTAAGACTATTACTTTTTTTACTTTCTTTTGGATACAAAAGGTGATAATGAGACCT GAACCTATTTACACTCTCAAATCCCTCACTAATGACCCAAACCTTGTGACTTAAATCTTCTTTTACTTTTTATTAAGAAG TAAAATACTGTAGTTTAGCTTGTGTTCTGAAATTTGTTCATGACCTTTTGCAGGATGGGAGGGTTATATGTTCTTCTGTA CCAAGCTATGGAAATGGAAACGAAGCAGGAAATGAGGCAGGCTACATTGTAGGAATGTCCACTTGTTATCCTCATCCAGG TTCGGTCAAGATACTTGACGGTGAAACTGTAACTATTGAGTCTAATTACAGCAGCAGCCAGAGGCACACTGGAGTTATGG GGTTCTTCTACCTGTTGGTGGCAGAACAACTACCACACCAACACATCATACATTCCACTCGTTCTTCATTTTTTATGGAT GTAAAAGGTATAATTTATTGATAGGTGTAGTGAGTGTCATGCTAATATAATAAGCATAGGGGCATCTATGATTTATATAA GCAAAGTGTCATTGATGATATCTTAGTGTAGAATCAAAAGAAATAATGACAGGCCAGAGCAGTCAATGGGCATATCATAT TTTTCTCTGAAGGTATTTACAGAAGCTTATCCTCAAATTTGATTCTAGTTTTAGAATCTTTTGTGGAAGAGTTTTGAAAC ATGGTAGTAGTCATATATAGTTTGTAATGTTTTCTTAAACCAGTCTTGTTCATATTGGCATATGGCTATGTGATGTATCT GTGGTACTGTATAGCTATACATGTAAAAGGGTCTTTTGTTTTGTTGTTACACACAAGAGGCCAAGTTTTATTTTACATTA TTCTCAAGGAATAAATGTTGAGTAGCCCTCCCTAGTATTACTGTTGTTGGTTCAAGCATCTTCTCTTTGACCACAACATA TATAATCCACTTTATTTCTCATTTCTTTCTTTCTACTCATATTTTTTCTTTACTTTCTCTGTTATCTTTCTCTCATCAAC CAAACAAGGTATTAACTTTTTCACCATCCTTTACATTTTTATACCATCCTCATTTTTTCCTTTTGTATTCCGCAATTATG TTTGCGGTGTGTAATCAATTCCCCAAACATATGTGAGTAAATTGTTAAGAATTCAAGTGTGAGTTGGAGTCCCAATTGAT TTAGTATAAGTGTGATGAAGACTTTATAAAAGAAGAGACTTACTCAATGCCTTAAGGTTATGATTAAAGTTGTGGTGCTC AAATCTCTCGGTGGTCTTCATTATTGGCTCATTGATGCATGATCTTATTCTTTGTGCTACTCGGTTTCCCCAACAAGTGG TACCAAAGCCGATAAACTCACTTGAAAGAGAGAGATTGTTGAGAATTCAAATATAAGTTTGATTCCCACATTAGTTAAAA ATGTG
CDS sequence (LotjaGi4g1v0026300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCTGTAACTAGAAATTTGGTGCTTTCTTTGGCATTACTTCTGGCAACATGCTCTAGTGTTTTGGGGAGAACTGA GAACAATATAAAGTCAGCTGTTTTTCTGTCCCCCAAGTTTGAACTTGGAGCAGGATCAGTTATCAATAGATATTACTATG ATATTGATTTTCCAAGAGGCCATATAGCACTGAAGAGTTTCAATGCTGAAGTGATTGATGAAGCTGGGAACCCTGTGCCT CTCCATGAAACTTACCTTCACCATTGGGTTGTTGAAAGATACCATCAAAGTAAACATGTGACACAAAAAGACACAAAATA TGATGATGGGCATCGAATGCTTCAAGAGTCTGATGATTTTGTCATTGTGAGGAACAGTGGAATATGCCAGAACAATGCTC TTAGTCAGTATTATGGACTTGGTTCTGAAACTAGAGGAACAGCTACAGACATTCCAGACCCTTTTGGCATAGAAGTGGGA AACCCTGACGAAATTCCAGAAGGGTATGAGGAGAAATGGATGCTGAATGTGCATGCCATTGATACAAGAGGCGTAGAGGA TAAGTTGGGGTGCACTGAGTGCAGGTGTGACCTTTATAATGTCACAAAGGATGAACATGACAGGCCTTTGAGGCCAGATT ATGTTGGAGGTTTGTTGTGTTGCTATGATTATTCACAGTGTAAATTGAGGGAAGGCTTTGAGGTTGAGAGCACAAAGAGA AGCCTCTACCTAAGATACACAGTGAAATGGGTTGAGTGGGACAATTTTGTAGTGCCTGTTAAGATATACATAATTGATGT GACTGATACTTTGAAGATATCTGATGAATCCAAAGGAATAACCAGCTCAGATCATAATTGTGTGGTTGAGTATGAAGTTG AACCTTGCAGCACAGACCATAAGGATGGTAATGGCTGTCATCATGTGAAGAGGACAAGCCTCCCAATGCAAACTGGTGGT TATGTAATCTATGGTGTTGCTCATCAGCACTCTGGGGCGGTTGGATCAACTCTTTATGGACAGGATGGGAGGGTTATATG TTCTTCTGTACCAAGCTATGGAAATGGAAACGAAGCAGGAAATGAGGCAGGCTACATTGTAGGAATGTCCACTTGTTATC CTCATCCAGGTTCGGTCAAGATACTTGACGGTGAAACTGTAACTATTGAGTCTAATTACAGCAGCAGCCAGAGGCACACT GGAGTTATGGGGTTCTTCTACCTGTTGGTGGCAGAACAACTACCACACCAACACATCATACATTCCACTCGTTCTTCATT TTTTATGGATGTAAAAGGTATAATTTATTGA
Protein sequence (LotjaGi4g1v0026300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVTRNLVLSLALLLATCSSVLGRTENNIKSAVFLSPKFELGAGSVINRYYYDIDFPRGHIALKSFNAEVIDEAGNPVP LHETYLHHWVVERYHQSKHVTQKDTKYDDGHRMLQESDDFVIVRNSGICQNNALSQYYGLGSETRGTATDIPDPFGIEVG NPDEIPEGYEEKWMLNVHAIDTRGVEDKLGCTECRCDLYNVTKDEHDRPLRPDYVGGLLCCYDYSQCKLREGFEVESTKR SLYLRYTVKWVEWDNFVVPVKIYIIDVTDTLKISDESKGITSSDHNCVVEYEVEPCSTDHKDGNGCHHVKRTSLPMQTGG YVIYGVAHQHSGAVGSTLYGQDGRVICSSVPSYGNGNEAGNEAGYIVGMSTCYPHPGSVKILDGETVTIESNYSSSQRHT GVMGFFYLLVAEQLPHQHIIHSTRSSFFMDVKGIIY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 3 | 419 | 417 | 1.5E-208 | ||
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 436 | 412 | - | – | |
| Pfam | 28 | 413 | 386 | 3.9E-192 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0026300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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