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LotjaGi4g1v0068500.4

Overview

Field Value
Gene ID LotjaGi4g1v0068500
Transcript ID LotjaGi4g1v0068500.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description T-complex protein 1 subunit delta; TAIR: AT3G18190.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q9LV21|TCPD_ARATH T-complex protein 1 subunit delta; TrEMBL-Plants: tr|I1K5G1|I1K5G1_SOYBN T-complex protein 1 subunit delta; Found in the gene: LotjaGi4g1v0068500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:8630734..8631824) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTCGATCTCCGTGATGTTAAGATCGTGAAGAAGCTCGGCGGCACCGTCGACGATACCGAGCTCGTCACGGGCCTTGT CTTTGACAAGAAGGTGAGCCATGCCGCTGGTGGACCTACTCGCATGGAGAATGCTAAAATTGCCGTGATCCAGTTCCAGA TTTCACCTCCGAAAACCGACATCGAGCAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTTTGAAGGAAGAG AGGAGTTACATTCTGGGCATGATTAAGAAGATTAAGGCAACTGGTTGCAATGTTTTGTTGATTCAGAAGAGCATTTTAAG AGATGCTGTCACTGATTTGTCTCTGCATTATCTTGCTAAAGCTAAGATATTGGTGATCAAAGATGTGGAAAGGGATGAGA TTGAGTTCATTACCAAGACATTGAACTGTTTGCCCATTGCCAACATTGAGCATTTCCGCGCCGAGAAGTTGGGCTATGCT GATCTTGTGGAGGAGGTTTCTCTTGGTGATGGCAAGATTGTGAAGATTTCTGGGATTAAGGACATGGGGAGGACCACAAC TGTGCTTGTCCGCGGATCCAACCAGCTTGTGCTTGATGAAGCGGAGCGGAGTCTTCATGATGCTTTGTGTGTTGTTAGGT GCTTGGTTGCCAAGAGGTTTCTGATAGCCGGTGGTGGCGCCCCAGAGATAGAGTTGTCGAGGCAGCTGGGTGCCTGGGCA AAGGTGCTTCATGGGATGGAGGGTTACTGTGTGCGAGCATTTGCTGAGGCACTTGAAGTCATTCCTTATACTCTGGCTGA GAATGCTGGTTTGAACCCCATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCCCAGGGTGAGATCAATACTGGAATCA ATGTGAGGAAGGGTCAGATCACAAACATCTTGGAGGAGAATGTGGTGCAGCCGCTGCTAGTAAGCACGAGTGCTATCACC TTGGCAACAGAGTGCGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAGAGGTTATGATTGAGACCAAG AGACAAATTAGTTTATGTTCCTTTTAGTGACTCTGGTTAAGTGATTTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0068500.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTCGATCTCCGTGATGTTAAGATCGTGAAGAAGCTCGGCGGCACCGTCGACGATACCGAGCTCGTCACGGGCCTTGT CTTTGACAAGAAGGTGAGCCATGCCGCTGGTGGACCTACTCGCATGGAGAATGCTAAAATTGCCGTGATCCAGTTCCAGA TTTCACCTCCGAAAACCGACATCGAGCAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTTTGAAGGAAGAG AGGAGTTACATTCTGGGCATGATTAAGAAGATTAAGGCAACTGGTTGCAATGTTTTGTTGATTCAGAAGAGCATTTTAAG AGATGCTGTCACTGATTTGTCTCTGCATTATCTTGCTAAAGCTAAGATATTGTTGGGCTATGCTGATCTTGTGGAGGAGG TTTCTCTTGGTGATGGCAAGATTGTGAAGATTTCTGGGATTAAGGACATGGGGAGGACCACAACTGTGCTTGTCCGCGGA TCCAACCAGCTTGTGCTTGATGAAGCGGAGCGGAGTCTTCATGATGCTTTGTGTGTTGTTAGGTGCTTGGTTGCCAAGAG GTTTCTGATAGCCGGTGGTGGCGCCCCAGAGATAGAGTTGTCGAGGCAGCTGGGTGCCTGGGCAAAGGTGCTTCATGGGA TGGAGGGTTACTGTGTGCGAGCATTTGCTGAGGCACTTGAAGTCATTCCTTATACTCTGGCTGAGAATGCTGGTTTGAAC CCCATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCCCAGGGTGAGATCAATACTGGAATCAATGTGAGGAAGGGTCA GATCACAAACATCTTGGAGGAGAATTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0068500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVDLRDVKIVKKLGGTVDDTELVTGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEE RSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILLGYADLVEEVSLGDGKIVKISGIKDMGRTTTVLVRG SNQLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYTLAENAGLN PIAIVTELRNRHAQGEINTGINVRKGQITNILEEN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11353:SF26
2 124 123 6.9E-143 –
Pfam
PF00118
2 124 123 4.1E-27
IPR002423
PANTHER
PTHR11353
2 124 123 6.9E-143 –
SUPERFAMILY
SSF52029
19 160 142 1.02E-34
IPR027409
Gene3D
G3DSA:3.50.7.10
25 124 100 2.2E-45
IPR027409
PANTHER
PTHR11353:SF26
125 275 151 6.9E-143 –
Pfam
PF00118
125 275 151 2.4E-45
IPR002423
PANTHER
PTHR11353
125 275 151 6.9E-143 –
Gene3D
G3DSA:3.50.7.10
125 151 27 8.9E-56
IPR027409
Gene3D
G3DSA:3.30.260.10
152 188 37 8.9E-56
IPR027410
PRINTS
PR00304
155 177 23 6.6E-8
IPR017998
SUPERFAMILY
SSF48592
163 274 112 3.66E-24
IPR027413
Gene3D
G3DSA:1.10.560.10
189 274 86 8.9E-56
IPR027413
PRINTS
PR00304
189 201 13 6.6E-8
IPR017998

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0068500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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