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LotjaGi4g1v0068500.3

Overview

Field Value
Gene ID LotjaGi4g1v0068500
Transcript ID LotjaGi4g1v0068500.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description T-complex protein 1 subunit delta; TAIR: AT3G18190.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q9LV21|TCPD_ARATH T-complex protein 1 subunit delta; TrEMBL-Plants: tr|C7C6E1|C7C6E1_SOYBN T-complex protein 1 subunit delta; Found in the gene: LotjaGi4g1v0068500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:8630155..8631856) extracted from Lotus japonicus Gifu genome v1.2.

ATCTCATCAATGGCGGCTCCTCACCGATCCTCCAAGACGGAGTCCTATGTCGACAACAAGCGCAAGGAAGACATCCGGCA TGCCAACATCCTCGCGGCGCGCTCCGTCGCCAACGCCGTCCGCACCAGTCTCGGTCCCAAAGGCATGGACAAGATGATCT CCACCTCCTCCGACGAGGTCATCATCACCAACGACGGCGCCACCATCCTCAACAAGATGCAGGTCCTCCAACCCGCCGCC AAGATGCTCGTCGAGCTTTCCAAGTCTCAGGACTCCGCAGCCGGTGACGGAACCACCACCGTCGTCGTTATCGCTGGCGC ACTCCTCGAGCAGTGCCTCCTCCTCCTCTCCCGCGGCATCCACCCCACCGTCATCTCCGATTCACTCTACAAGGCCTCCA TCAAAGCCGTCGACGTCCTCACTGCCATGGCCGTCCCCGTCGAGCTCACCGATCGTGACTCCCTCGTCAAATCCGCCAGC ACCTCCCTCAACAGCAAGGTCGTCAGCCAGTACTCCACCCTTCTCGCTCCTCTCGCTGTCGACGCCGTCCTCACAGTCAT CGATCCCGCCCAGCCTGAAATGGTCGATCTCCGTGATGTTAAGATCGTGAAGAAGCTCGGCGGCACCGTCGACGATACCG AGCTCGTCACGGGCCTTGTCTTTGACAAGAAGGTGAGCCATGCCGCTGGTGGACCTACTCGCATGGAGAATGCTAAAATT GCCGTGATCCAGTTCCAGATTTCACCTCCGAAAACCGACATCGAGCAGAGCATTGTGGTGAGTGATTACTCTCAGATGGA TAGGATTTTGAAGGAAGAGAGGAGTTACATTCTGGGCATGATTAAGAAGATTAAGGCAACTGGTTGCAATGTTTTGTTGA TTCAGAAGAGCATTTTAAGAGATGCTGTCACTGATTTGTCTCTGCATTATCTTGCTAAAGCTAAGATATTGGTGATCAAA GATGTGGAAAGGGATGAGATTGAGTTCATTACCAAGACATTGAACTGTTTGCCCATTGCCAACATTGAGCATTTCCGCGC CGAGAAGTTGGGCTATGCTGATCTTGTGGAGGAGGTTTCTCTTGGTGATGGCAAGATTGTGAAGATTTCTGGGATTAAGG ACATGGGGAGGACCACAACTGTGCTTGTCCGCGGATCCAACCAGCTTGTGCTTGATGAAGCGGAGCGGAGTCTTCATGAT GCTTTGTGTGTTGTTAGGTGCTTGGTTGCCAAGAGGTTTCTGATAGCCGGTGGTGGCGCCCCAGAGATAGAGTTGTCGAG GCAGCTGGGTGCCTGGGCAAAGGTGCTTCATGGGATGGAGGGTTACTGTGTGCGAGCATTTGCTGAGGCACTTGAAGTCA TTCCTTATACTCTGGCTGAGAATGCTGGTTTGAACCCCATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCCCAGGGT GAGATCAATACTGGAATCAATGTGAGGAAGGGTCAGATCACAAACATCTTGGAGGAGAATGTGGTGCAGCCGCTGCTAGT AAGCACGAGTGCTATCACCTTGGCAACAGAGTGCGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAGA GGTTATGATTGAGACCAAGAGACAAATTAGTTTATGTTCCTTTTAGTGACTCTGGTTAAGTGATTTTTGACTTGCTCTGG CTATGGTGAAGCTTGGTGTTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0068500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGCTCCTCACCGATCCTCCAAGACGGAGTCCTATGTCGACAACAAGCGCAAGGAAGACATCCGGCATGCCAACAT CCTCGCGGCGCGCTCCGTCGCCAACGCCGTCCGCACCAGTCTCGGTCCCAAAGGCATGGACAAGATGATCTCCACCTCCT CCGACGAGGTCATCATCACCAACGACGGCGCCACCATCCTCAACAAGATGCAGGTCCTCCAACCCGCCGCCAAGATGCTC GTCGAGCTTTCCAAGTCTCAGGACTCCGCAGCCGGTGACGGAACCACCACCGTCGTCGTTATCGCTGGCGCACTCCTCGA GCAGTGCCTCCTCCTCCTCTCCCGCGGCATCCACCCCACCGTCATCTCCGATTCACTCTACAAGGCCTCCATCAAAGCCG TCGACGTCCTCACTGCCATGGCCGTCCCCGTCGAGCTCACCGATCGTGACTCCCTCGTCAAATCCGCCAGCACCTCCCTC AACAGCAAGGTCGTCAGCCAGTACTCCACCCTTCTCGCTCCTCTCGCTGTCGACGCCGTCCTCACAGTCATCGATCCCGC CCAGCCTGAAATGGTCGATCTCCGTGATGTTAAGATCGTGAAGAAGCTCGGCGGCACCGTCGACGATACCGAGCTCGTCA CGGGCCTTGTCTTTGACAAGAAGGTGAGCCATGCCGCTGGTGGACCTACTCGCATGGAGAATGCTAAAATTGCCGTGATC CAGTTCCAGATTTCACCTCCGAAAACCGACATCGAGCAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTTT GAAGGAAGAGAGGAGTTACATTCTGGGCATGATTAAGAAGATTAAGGCAACTGGTTGCAATGTTTTGTTGATTCAGAAGA GCATTTTAAGAGATGCTGTCACTGATTTGTCTCTGCATTATCTTGCTAAAGCTAAGATATTGGTGATCAAAGATGTGGAA AGGGATGAGATTGAGTTCATTACCAAGACATTGAACTGTTTGCCCATTGCCAACATTGAGCATTTCCGCGCCGAGAAGTT GGGCTATGCTGATCTTGTGGAGGAGGTTTCTCTTGGTGATGGCAAGATTGTGAAGATTTCTGGGATTAAGGACATGGGGA GGACCACAACTGTGCTTGTCCGCGGATCCAACCAGCTTGTGCTTGATGAAGCGGAGCGGAGTCTTCATGATGCTTTGTGT GTTGTTAGGTGCTTGGTTGCCAAGAGGTTTCTGATAGCCGGTGGTGGCGCCCCAGAGATAGAGTTGTCGAGGCAGCTGGG TGCCTGGGCAAAGGTGCTTCATGGGATGGAGGGTTACTGTGTGCGAGCATTTGCTGAGGCACTTGAAGTCATTCCTTATA CTCTGGCTGAGAATGCTGGTTTGAACCCCATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCCCAGGGTGAGATCAAT ACTGGAATCAATGTGAGGAAGGGTCAGATCACAAACATCTTGGAGGAGAATGTGGTGCAGCCGCTGCTAGTAACTTGGTG TTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0068500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAAPHRSSKTESYVDNKRKEDIRHANILAARSVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMQVLQPAAKML VELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSRGIHPTVISDSLYKASIKAVDVLTAMAVPVELTDRDSLVKSASTSL NSKVVSQYSTLLAPLAVDAVLTVIDPAQPEMVDLRDVKIVKKLGGTVDDTELVTGLVFDKKVSHAAGGPTRMENAKIAVI QFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVE RDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEEVSLGDGKIVKISGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALC VVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQGEIN TGINVRKGQITNILEENVVQPLLVTWC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.560.10
7 203 197 2.3E-49
IPR027413
PANTHER
PTHR11353:SF26
9 505 497 1.7E-265 –
PANTHER
PTHR11353
9 505 497 1.7E-265 –
CDD
cd03338
15 505 491 0.0
IPR012717
TIGRFAM
TIGR02342
15 505 491 6.4E-249
IPR012717
SUPERFAMILY
SSF48592
16 505 490 2.22E-74
IPR027413
Pfam
PF00118
33 506 474 1.7E-147
IPR002423
PRINTS
PR00304
35 51 17 2.7E-32
IPR017998
ProSitePatterns
PS00750
38 50 13 -
IPR002194
PRINTS
PR00304
57 75 19 2.7E-32
IPR017998
PRINTS
PR00304
87 106 20 2.7E-32
IPR017998
ProSitePatterns
PS00995
87 95 9 -
IPR002194
SUPERFAMILY
SSF54849
144 407 264 1.71E-29
IPR027410
SUPERFAMILY
SSF52029
209 382 174 3.14E-47
IPR027409
Gene3D
G3DSA:3.50.7.10
215 370 156 3.1E-73
IPR027409
Gene3D
G3DSA:1.10.560.10
371 506 136 1.6E-38
IPR027413
PRINTS
PR00304
377 399 23 2.7E-32
IPR017998
PRINTS
PR00304
411 423 13 2.7E-32
IPR017998

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0068500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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