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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0068500 |
| Transcript ID | LotjaGi4g1v0068500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | T-complex protein 1 subunit delta; TAIR: AT3G18190.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q9LV21|TCPD_ARATH T-complex protein 1 subunit delta; TrEMBL-Plants: tr|C7C6E1|C7C6E1_SOYBN T-complex protein 1 subunit delta; Found in the gene: LotjaGi4g1v0068500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8629730..8632390) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTTAAACACTTCATTTTCACTTTTTTTTGTTTCTATCTCTCTCATCTTATCATCTATCACATCTCATATTTTCTCT CTCTTACTTTTTCTTTTCTTCCTATCTCTCTCTTCATTCCACCTCTTTCACCTCAAATGAGAGGTGTGTAAGTAACATTA TTGCTTGATTATGGGTGATGAAAAAATCGAAAGAGATCGGAGAATTTTGTGATTGATGCCGTTGAAATTTTGGTTGAGAA CAAACAGGACATGCTTGTAGGTGGAAGTGACACATCTTATGGCGGAAATGATCCAGAAGCCAGAGGTAATAAGTATTAAA TTTAAAATCTCTCCCCTCCTATATATGAACCAAACGTAATAAGTATTAAAATCTCTCCCTCCCCTCCTTTGAACCAAACA GTAGCTTAGGGTTTTCAGCAACCTCATCTCATCAATGGCGGCTCCTCACCGATCCTCCAAGACGGAGTCCTATGTCGACA ACAAGCGCAAGGAAGACATCCGGCATGCCAACATCCTCGCGGCGCGCTCCGTCGCCAACGCCGTCCGCACCAGTCTCGGT CCCAAAGGCATGGACAAGATGATCTCCACCTCCTCCGACGAGGTCATCATCACCAACGACGGCGCCACCATCCTCAACAA GATGCAGGTCCTCCAACCCGCCGCCAAGATGCTCGTCGAGCTTTCCAAGTCTCAGGACTCCGCAGCCGGTGACGGAACCA CCACCGTCGTCGTTATCGCTGGCGCACTCCTCGAGCAGTGCCTCCTCCTCCTCTCCCGCGGCATCCACCCCACCGTCATC TCCGATTCACTCTACAAGGCCTCCATCAAAGCCGTCGACGTCCTCACTGCCATGGCCGTCCCCGTCGAGCTCACCGATCG TGACTCCCTCGTCAAATCCGCCAGCACCTCCCTCAACAGCAAGGTCGTCAGCCAGTACTCCACCCTTCTCGCTCCTCTCG CTGTCGACGCCGTCCTCACAGTCATCGATCCCGCCCAGCCTGAAATGGTCGATCTCCGTGATGTTAAGATCGTGAAGAAG CTCGGCGGCACCGTCGACGATACCGAGCTCGTCACGGGCCTTGTCTTTGACAAGAAGGTGAGCCATGCCGCTGGTGGACC TACTCGCATGGAGAATGCTAAAATTGCCGTGATCCAGTTCCAGATTTCACCTCCGAAAACCGACATCGAGCAGAGCATTG TGGTGAGTGATTACTCTCAGATGGATAGGATTTTGAAGGAAGAGAGGAGTTACATTCTGGGCATGATTAAGAAGATTAAG GCAACTGGTTGCAATGTTTTGTTGATTCAGAAGAGCATTTTAAGAGATGCTGTCACTGATTTGTCTCTGCATTATCTTGC TAAAGCTAAGATATTGGTGATCAAAGATGTGGAAAGGGATGAGATTGAGTTCATTACCAAGACATTGAACTGTTTGCCCA TTGCCAACATTGAGCATTTCCGCGCCGAGAAGTTGGGCTATGCTGATCTTGTGGAGGAGGTTTCTCTTGGTGATGGCAAG ATTGTGAAGATTTCTGGGATTAAGGACATGGGGAGGACCACAACTGTGCTTGTCCGCGGATCCAACCAGCTTGTGCTTGA TGAAGCGGAGCGGAGTCTTCATGATGCTTTGTGTGTTGTTAGGTGCTTGGTTGCCAAGAGGTTTCTGATAGCCGGTGGTG GCGCCCCAGAGATAGAGTTGTCGAGGCAGCTGGGTGCCTGGGCAAAGGTGCTTCATGGGATGGAGGGTTACTGTGTGCGA GCATTTGCTGAGGCACTTGAAGTCATTCCTTATACTCTGGCTGAGAATGCTGGTTTGAACCCCATTGCAATTGTTACTGA GCTGAGGAATCGTCATGCCCAGGGTGAGATCAATACTGGAATCAATGTGAGGAAGGGTCAGATCACAAACATCTTGGAGG AGAATGTGGTGCAGCCGCTGCTAGTAAGCACGAGTGCTATCACCTTGGCAACAGAGTGCGTGCGGATGATTTTGAAGATT GATGATATTGTAACTGTGAGGTAGAGGTTATGATTGAGACCAAGAGACAAATTAGTTTATGTTCCTTTTAGTGACTCTGG TTAAGTGATTTTTGACTTGCTCTGGCTATGGTGAAGCTTGGTGTTAACTGTTAAGATCAAGTGCCTGTGATTCATTTGGA GTGTCATTGAGTTAAGTTATATTTGATCTTTTAGATGTGTTGGAATCTGGGCATCTTTGTTTTGGAGGATACATTGATTT GGCAGGAGGGGAAGCTTCAATTGCCATTGCACCATGACATATTTATCGTTGTGTTTTCGATTTCCTGTTATTAAACCAAC TCTTCTGGTGTTTTTGTATTTGAATTCTGTTCTTTTAAGTTAGAGGATGCTTACTGAGTAGAACTCCATTGGTTGCTGAC AAGGGGACTCTGTTCCATTGGTTGCTGAATCAAGTAAAACTCATGAAGTTGTTACTTGGTATAAAGTAGAGGACAAGATA AAAAGGATTGATTTCTCTAATTGGTTTTCAATATTTATATGTTTGAGATTTGCAGTTGTTCTCGTGACAAATGTTTCTTT GATATAGAAAATTTACATTTACATATACATGTTGTGCAGTAAAAGCCCATGAAACTTGCTTCTACATGATCAAATTTGAT CCTGTATTCTTCTATTCTCTT
CDS sequence (LotjaGi4g1v0068500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTCCTCACCGATCCTCCAAGACGGAGTCCTATGTCGACAACAAGCGCAAGGAAGACATCCGGCATGCCAACAT CCTCGCGGCGCGCTCCGTCGCCAACGCCGTCCGCACCAGTCTCGGTCCCAAAGGCATGGACAAGATGATCTCCACCTCCT CCGACGAGGTCATCATCACCAACGACGGCGCCACCATCCTCAACAAGATGCAGGTCCTCCAACCCGCCGCCAAGATGCTC GTCGAGCTTTCCAAGTCTCAGGACTCCGCAGCCGGTGACGGAACCACCACCGTCGTCGTTATCGCTGGCGCACTCCTCGA GCAGTGCCTCCTCCTCCTCTCCCGCGGCATCCACCCCACCGTCATCTCCGATTCACTCTACAAGGCCTCCATCAAAGCCG TCGACGTCCTCACTGCCATGGCCGTCCCCGTCGAGCTCACCGATCGTGACTCCCTCGTCAAATCCGCCAGCACCTCCCTC AACAGCAAGGTCGTCAGCCAGTACTCCACCCTTCTCGCTCCTCTCGCTGTCGACGCCGTCCTCACAGTCATCGATCCCGC CCAGCCTGAAATGGTCGATCTCCGTGATGTTAAGATCGTGAAGAAGCTCGGCGGCACCGTCGACGATACCGAGCTCGTCA CGGGCCTTGTCTTTGACAAGAAGGTGAGCCATGCCGCTGGTGGACCTACTCGCATGGAGAATGCTAAAATTGCCGTGATC CAGTTCCAGATTTCACCTCCGAAAACCGACATCGAGCAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTTT GAAGGAAGAGAGGAGTTACATTCTGGGCATGATTAAGAAGATTAAGGCAACTGGTTGCAATGTTTTGTTGATTCAGAAGA GCATTTTAAGAGATGCTGTCACTGATTTGTCTCTGCATTATCTTGCTAAAGCTAAGATATTGGTGATCAAAGATGTGGAA AGGGATGAGATTGAGTTCATTACCAAGACATTGAACTGTTTGCCCATTGCCAACATTGAGCATTTCCGCGCCGAGAAGTT GGGCTATGCTGATCTTGTGGAGGAGGTTTCTCTTGGTGATGGCAAGATTGTGAAGATTTCTGGGATTAAGGACATGGGGA GGACCACAACTGTGCTTGTCCGCGGATCCAACCAGCTTGTGCTTGATGAAGCGGAGCGGAGTCTTCATGATGCTTTGTGT GTTGTTAGGTGCTTGGTTGCCAAGAGGTTTCTGATAGCCGGTGGTGGCGCCCCAGAGATAGAGTTGTCGAGGCAGCTGGG TGCCTGGGCAAAGGTGCTTCATGGGATGGAGGGTTACTGTGTGCGAGCATTTGCTGAGGCACTTGAAGTCATTCCTTATA CTCTGGCTGAGAATGCTGGTTTGAACCCCATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCCCAGGGTGAGATCAAT ACTGGAATCAATGTGAGGAAGGGTCAGATCACAAACATCTTGGAGGAGAATGTGGTGCAGCCGCTGCTAGTAAGCACGAG TGCTATCACCTTGGCAACAGAGTGCGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG
Protein sequence (LotjaGi4g1v0068500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPHRSSKTESYVDNKRKEDIRHANILAARSVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMQVLQPAAKML VELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSRGIHPTVISDSLYKASIKAVDVLTAMAVPVELTDRDSLVKSASTSL NSKVVSQYSTLLAPLAVDAVLTVIDPAQPEMVDLRDVKIVKKLGGTVDDTELVTGLVFDKKVSHAAGGPTRMENAKIAVI QFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVE RDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEEVSLGDGKIVKISGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALC VVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQGEIN TGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 7 | 203 | 197 | 2.5E-49 | ||
| PANTHER | 9 | 527 | 519 | 6.6E-277 | – | |
| PANTHER | 9 | 527 | 519 | 6.6E-277 | – | |
| TIGRFAM | 15 | 528 | 514 | 1.5E-261 | ||
| CDD | 15 | 528 | 514 | 0.0 | ||
| SUPERFAMILY | 16 | 527 | 512 | 3.53E-83 | ||
| Pfam | 33 | 527 | 495 | 4.6E-155 | ||
| PRINTS | 35 | 51 | 17 | 3.3E-32 | ||
| ProSitePatterns | 38 | 50 | 13 | - | ||
| PRINTS | 57 | 75 | 19 | 3.3E-32 | ||
| ProSitePatterns | 87 | 95 | 9 | - | ||
| PRINTS | 87 | 106 | 20 | 3.3E-32 | ||
| SUPERFAMILY | 144 | 407 | 264 | 1.92E-29 | ||
| SUPERFAMILY | 209 | 382 | 174 | 3.4E-47 | ||
| Gene3D | 215 | 370 | 156 | 3.4E-73 | ||
| Gene3D | 371 | 529 | 159 | 6.6E-51 | ||
| PRINTS | 377 | 399 | 23 | 3.3E-32 | ||
| PRINTS | 411 | 423 | 13 | 3.3E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi4g1v0068500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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