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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0075200 |
| Transcript ID | LotjaGi4g1v0075200.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TAIR: AT4G34030.1 3-methylcrotonyl-CoA carboxylase; Swiss-Prot: sp|Q9LDD8|MCCB_ARATH Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial; TrEMBL-Plants: tr|K7K832|K7K832_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0075200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9653481..9656848) extracted from Lotus japonicus Gifu genome v1.2.
AGCTTGCAGGACATGAGTTGTATGAAGAACCCTTGCCTTCTGGTGGAGTTGTCACTGGGATAGGTCCTGTGCATGGGCGA CTTTGTATGTTTGTGGCCAATGATCCCACTGTTAAGGGAGGGACCTATTATCCTATTACTGTTAAGAAGCATCTCAGAGC ACAGGAGATTGCTTCTCAGTGCAAATTGCCCTGCGTGTATCTTGTTGACAGTGGAGGTGCTTTCCTTCCCAAGCAGGCTG ATGTCTTTCCAGACAGGGAGAACTTCGGTAGAATATTCTATAATCAAGCTCTAATGTCTGCTGAAGGGATTCCGCAGATT GCGTTGGTTTTAGGTTCTTGCACGGCTGGGGGTGCATACATACCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAA TGGCACCATTTTTTTAGCAGGACCTCCTCTTGTTAAGGTCAGCTCCAGCCACTCTGATATTCCAAAATGCTATTGTGTGT GATAGTCTCTGTCTATTTGTTTGTTCTTCTTTGTTTTTTTACGTTGAGAAGTTCCACATTGACTAGAGATATGGCCAAAA TAGTCCTTATAAAGGGTAGAACAACTTTCACTTCTAAGGTAGCTTTTGGGATAGTGTTAGGCCTGACCCAAATTTTAAGT TGTATATCTTTTAACCATAGTTCACATTAATCAAATGATTTTATAGGCTGCTACTGGAGAAGAAGTCTCTGCAGAGGATT TGGGAGGTGCTACTGTGCACTGCAAGACATCAGGTGTTTCAGACTATTTTGCTCAAGGTATTTTCTCCACCACTTATCTG AATGGATAGAGCATGTGATAGCTGCTGTAGTCTTATTGGTTTCTATTATTGATATTATACATTTTTTGCTTCTCTGTAGA TGAATTTCATGCACTTGCACTTGGGAGGAACATCATTAAGAATTTGCACATGGCTGGGAAAGATGTCTTGGCAAATGGAT TGCAAAATTTAAGCTATGAATATAAAGAGCCTCTATATGATGTCAACGAACTTCGTTCTATAGCCCCCACTGATCTTAAG AAGCAGTTTGATGTCCGATCAGTTATTGCTCGTATTGTGGATGGAAGTGAATTTGATGAATTCAAGAAATTGTATGGCAC TGTGAGGGCATATTCACCTTACTGTCTACATGCTTAATCATTATATTTATATCTATGTGTTGCTATGAAACTTCACTTTT GCTTTTCTCTCTAGGTGCTAGTACCCTTGATGAGTTGTCACACATTTATTGGTTGTTAGTTTTCACAATAAATATTTGGA GTCCACCAAGTATATGCAGCAACCAAGAAATGTTTGACAAGTTCTAAATGTACTGGTAGCCTGGAAAAGAAGTACTTTAA TGATTACATGCGTGTATGATATATCCTTATTCAACATATATGCAGACTCTCGTAACAGGTTTTGCTAGAATTTATGGACA GCCTGTAGGAATTATTGGAAACAATGGGATTTTATTCAACGAATCTGCTCTGAAAGGGGCCCATTTCATTGAAATATGTA CTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGGTATGAATTTAAACTTTTTCTTCAGTTACT GTGATTATGATAGTTTGTTTTATTATTCTGAGTAGAATGGTTCCCTTCTCCTTCAGAACATCACTGGGTTCGCAGTATGA ATAATATCATTATATTTTAGTGTTTATTAGTTGCGAGATGCTGAATTGTCTAGTATTGTCCATGATGAGTGATGACATGA ATAAATGATCTACATGATTGATGGGGGGAATCAGGAAATAGTAACGAGAGTTTGAGAATCATCATCTGTAATTTGATAAA ACCATAATGATGTGTAGATTTAGACAATCCAGCTGGATTATTGACACTGTAAGACAAGTCAATGCACATGAGATCTCAAA CTTCAGTTTGATCTATCTCCTTGACCTTTTTTAGCCATGATCCATATTCTTATATTAATTATAGAAGCTGAAGAGATACA TTTGCTATTAGCTTGTCTCTCATTTTTTCCAGGTCAAGAATGGTTAAATTATTCAAATATGACACTGAAAAACTATCCCA TTAGTAGTTTGCTGAAGAATGAGACTGTAATTTGTGTCTATTTGGTAGGTGGGCTCAAGATCTGAGGCAAATGGCATAGC AAAATCTGGTGCGAAAATGGTGATGGCAGTTTCTTGCGCAAAGGTTTGTCAATTCTCACCTATTTATAAAACTGTTTACA ATTGTGCTTATATGGCGTCTGCACCATGTCTTTTTGGGGGGTGGGGGGTTGGAGCTGTTAAGTCAATTTAAACGAAAGAA AATAGAAGGTATAGTAGAATGAAAGAGGTTGTAATATGTTTATAAAGGTGAATCTCAACTCATGCAAGATATTCTCGAAA ATAAATTTTTTTGCTTCAAATAAATATCTGCAGGTACCTAAAATCACCATAATTGTCGGCGGAAGCTTCGGTGCAGGAAA CTATGCAATGTGTGGCCGTGCCTACAGTCCCAATTTCATGTTCCTTTGGCCTAATGCCAGAATATCTGTGATGGGTGGTG CTCAGGTAAGTGTATCTCTCTACAAATTATTGCCATTTCTGAACAGCTCTCGACACCGTCATTGTTCTGAACTTTTTGAG ATGCATATCATGTTTTATGCGTGTGTCCTCCATTTGAAATCAAACTTGATTTTTGAATATTTGATTGATCATTAGTTGAA ATTCATCTGGGTTTTGTGGATTTTACATATATTCCTGTGGAATGTGATCATCAGGCTGCTGGGGTACTGTCTCAAATAGA GAAAACCAACAAGAAAAAGCAAGGAATTCAGGTAAAATATGATTGAGGAAATATTGTTTAGTTTACTTGCTTATAACAAA TTCATGGCTTTCTCATTTGCCTTTTTTGTGTCTTGATGTGCATTATACTTGTAATGCAGTGGAGCAAGGAAGAAGAAGAA AAGTTCAAAACAAAAGTAGTGGAGGCTTATGAGGTAGAAGGAAGTCCTTATTACTCAACAGCGAGGCTTTGGGATGATGG AATCATAGATCCAGCGGATACAAGAAAAGTGATTGGTCTGAGCATATCTGCTTCCTTGAACCGCGCCATAGAAGATACCA AATTTGGTGTGTTTAGAATGTGATTGCTGTGTGCACTAGAACTGGCGGCTATCCTCCAGTGTGACATAGATTTGTTACTT CTGTAATTAAAAGGAAACAAACACTACCTGAAAAGGGGAACAAGTGAAAAGTAATTTATGTCAATGTGTAACAGCCAGAT TTGTTTAGAATAAAAAGTTCAATCGCACTTTTAGTCCCTCATCTCTATCGCGACTGTAAGATTAAAGTGATTTTGTTATA GAATTTAT
CDS sequence (LotjaGi4g1v0075200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGTGGCCAATGATCCCACTGTTAAGGGAGGGACCTATTATCCTATTACTGTTAAGAAGCATCTCAGAGCACAGGA GATTGCTTCTCAGTGCAAATTGCCCTGCGTGTATCTTGTTGACAGTGGAGGTGCTTTCCTTCCCAAGCAGGCTGATGTCT TTCCAGACAGGGAGAACTTCGGTAGAATATTCTATAATCAAGCTCTAATGTCTGCTGAAGGGATTCCGCAGATTGCGTTG GTTTTAGGTTCTTGCACGGCTGGGGGTGCATACATACCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGCAC CATTTTTTTAGCAGGACCTCCTCTTGTTAAGGCTGCTACTGGAGAAGAAGTCTCTGCAGAGGATTTGGGAGGTGCTACTG TGCACTGCAAGACATCAGGTGTTTCAGACTATTTTGCTCAAGATGAATTTCATGCACTTGCACTTGGGAGGAACATCATT AAGAATTTGCACATGGCTGGGAAAGATGTCTTGGCAAATGGATTGCAAAATTTAAGCTATGAATATAAAGAGCCTCTATA TGATGTCAACGAACTTCGTTCTATAGCCCCCACTGATCTTAAGAAGCAGTTTGATGTCCGATCAGTTATTGCTCGTATTG TGGATGGAAGTGAATTTGATGAATTCAAGAAATTGTATGGCACTACTCTCGTAACAGGTTTTGCTAGAATTTATGGACAG CCTGTAGGAATTATTGGAAACAATGGGATTTTATTCAACGAATCTGCTCTGAAAGGGGCCCATTTCATTGAAATATGTAC TCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGGTGGGCTCAAGATCTGAGGCAAATGGCATAG CAAAATCTGGTGCGAAAATGGTGATGGCAGTTTCTTGCGCAAAGGTACCTAAAATCACCATAATTGTCGGCGGAAGCTTC GGTGCAGGAAACTATGCAATGTGTGGCCGTGCCTACAGTCCCAATTTCATGTTCCTTTGGCCTAATGCCAGAATATCTGT GATGGGTGGTGCTCAGGTAAGTGTATCTCTCTACAAATTATTGCCATTTCTGAACAGCTCTCGACACCGTCATTGTTCTG AACTTTTTGAGATGCATATCATGTTTTATGCGTGTGTCCTCCATTTGAAATCAAACTTGATTTTTGAATATTTGATTGAT CATTAG
Protein sequence (LotjaGi4g1v0075200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFVANDPTVKGGTYYPITVKKHLRAQEIASQCKLPCVYLVDSGGAFLPKQADVFPDRENFGRIFYNQALMSAEGIPQIAL VLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGATVHCKTSGVSDYFAQDEFHALALGRNII KNLHMAGKDVLANGLQNLSYEYKEPLYDVNELRSIAPTDLKKQFDVRSVIARIVDGSEFDEFKKLYGTTLVTGFARIYGQ PVGIIGNNGILFNESALKGAHFIEICTQRNIPLVFLQNITGFMVGSRSEANGIAKSGAKMVMAVSCAKVPKITIIVGGSF GAGNYAMCGRAYSPNFMFLWPNARISVMGGAQVSVSLYKLLPFLNSSRHRHCSELFEMHIMFYACVLHLKSNLIFEYLID H
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 359 | 359 | 2.5E-211 | – | |
| Gene3D | 1 | 168 | 168 | 5.6E-62 | – | |
| PANTHER | 1 | 359 | 359 | 2.5E-211 | – | |
| ProSiteProfiles | 1 | 175 | 175 | 44.81 | ||
| SUPERFAMILY | 1 | 161 | 161 | 1.57E-48 | ||
| Pfam | 2 | 358 | 357 | 2.2E-127 | ||
| SUPERFAMILY | 134 | 361 | 228 | 1.57E-68 | ||
| Gene3D | 177 | 371 | 195 | 4.2E-78 | – | |
| ProSiteProfiles | 184 | 401 | 218 | 43.991 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ligase activity | Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. |
Expression pattern of LotjaGi4g1v0075200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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