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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0078400 |
| Transcript ID | LotjaGi4g1v0078400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT2G01420.2 Auxin efflux carrier family protein; Swiss-Prot: sp|Q8RWZ6|PIN4_ARATH Auxin efflux carrier component 4; TrEMBL-Plants: tr|Q8GV76|Q8GV76_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi4g1v0078400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10228769..10230638) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCGAAAATAATACAGCAATCAATCTCCATACTGTCTGATGCTGGTCTTGGAATGGCTATGTTTAGCTTAGGTGAGTT GAGTGGTCACCGTTTTTCCCAATCTTTACTCCTACAATAATTTCATTCTTTTCTTTATTCTGCAACTCATTTCCTCTTCT ATGAAAACAACAGTAACTCCCATTTTCTAGGGTAGATAGTTGGATACGTATATTTTCTTACAATCCAAGAAAGTAGTTAA AACCTACCTACGGGTTTCTCTTCCTATTTTAGTTATCAAATTCAAGAGTAGTGATTAATGTGAACTTTAGGTGTCAATAA TTTCTACTTGCGTGTAACGTGTTACTTTTCTTCTCATCTTTAGAAAAAATTGTGTTCAAAATGTAAAACCAAACACCCAC TTAATGGTACTAAAACATGTGATCATTTTTCTTATTACAATCACAATACGATGAACGGGGTACAACGGCACTTGATTGAA TGTGATGGTAACATGGGTATGAAAATTATGGATTTGGAGGAAACAAGTAAGCAAATCACAACCGTCCATTCTCATGAAAT TGGTTGCCACATAACATAACCAAATGACCTTGTTGGGTAGACGATAGTGTGGGGATTGCATTTGCATAACGATCCCCGAC ATGTGGGGTCTGGTCATGAACCAATTCGCTTTCTGATTCAAGGCGGTGGTGAGGAAAGGTACAAATTTTGGACCAAAATT CGGTAAAGGTTGAAATGGACAAATTATGAGGCAGCATAATAACTATCTTTTGTTTTTCAGTGAGAAAACTGAAAGGCATT TTTGCCATGTTGATGTGAATGTAAATTGTGGGTGTCTTCTAGTTTTTATCGTTTTCCCTTTTGGCTGAATCTATTGAGGA TTTATTTGTTGGGTTTGTGACATTTGCAGGCTTGTTTATGGCTCTTCAACCCAAGATGATTGCATGTGGGAACTCAGTGG CTACATTTGCTATGGCTGTTCGATTTCTTACAGGTCCTGCAGTTATGGCAGCAGCTTCCATTGCTGTTGGCCTGCGTGGC ACCCTCTTACGTATAGCTATTGTTCAGGTACACTTATTATTGACAAGCTTCTTCCCTCTCTACGACACACTAAAACATAA ACTTTATGATCAGTAACTTAACTATATATATATATATAGAGAAAAAGAAATAATAAATAATAAACATTAGAATAAGAACA TTTAAATTGACTCATAATTAAAAAATCTGGTAAAGATAACATTTATGTCATCTGAAATCTTGTGGGATGGAAAAAACTCA TAATTAATTAATGATCACCTCACTTGATAACAAAATAAGTGAATTAGGATTATTCTCGATCCGTAATGATCGTGACGCGA AGCTCTATCATCCACACATTTGTCATCCACATCATTAGTACACGATCGAATTTTTTACAACGGTGACTGAAATCAAAGTT ATTAGTATAAGATTAGGGATTAAAACTATAAAAATTAGATTTTAGTGAGCAAAACTAAATTTGAGGGACTAAAAATTAGT TCAGCTTTATTTTAGTTATATGAATAATATTTCTTGTTATATTAAACATGAAACACAAACCTTTTAGATTGTTAGCTCAC TGAAATATAATTGTTGGAAATAGGCTGCACTTCCTCAAGGAATTGTTCCATTTGTGTTTGCCAAGGAGTACAATGTCCAT CCGGCCATTCTTAGCACAGGGTAAGCAATTATACTTGTTTTATTCTGTTTAATTTCTCATTCTTTCTCTTAAGAAATTAG GAAGTTGACCTTTTTTTTCTAAAATGTAAAATTTTCATTGCAGGGTTATATTTGGGATGTTGATAGCTCTACCAATTACA CTAGTGTACTACATATTACTTGGTTTGTAA
CDS sequence (LotjaGi4g1v0078400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAAAATAATACAGCAATCAATCTCCATACTGTCTGATGCTGGTCTTGGAATGGCTATGTTTAGCTTAGGCTTGTT TATGGCTCTTCAACCCAAGATGATTGCATGTGGGAACTCAGTGGCTACATTTGCTATGGCTGTTCGATTTCTTACAGGTC CTGCAGTTATGGCAGCAGCTTCCATTGCTGTTGGCCTGCGTGGCACCCTCTTACGTATAGCTATTGTTCAGGCTGCACTT CCTCAAGGAATTGTTCCATTTGTGTTTGCCAAGGAGTACAATGTCCATCCGGCCATTCTTAGCACAGGGGTTATATTTGG GATGTTGATAGCTCTACCAATTACACTAGTGTACTACATATTACTTGGTTTGTAA
Protein sequence (LotjaGi4g1v0078400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPKIIQQSISILSDAGLGMAMFSLGLFMALQPKMIACGNSVATFAMAVRFLTGPAVMAAASIAVGLRGTLLRIAIVQAAL PQGIVPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 119 | 119 | 2.4E-55 | ||
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 124 | 124 | 1.8E-76 | – | |
| PANTHER | 1 | 124 | 124 | 1.8E-76 | – | |
| TMHMM | 9 | 31 | 23 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| Phobius | 31 | 41 | 11 | - | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 42 | 63 | 22 | - | – | |
| Phobius | 64 | 69 | 6 | - | – | |
| TMHMM | 68 | 90 | 23 | - | – | |
| Phobius | 70 | 89 | 20 | - | – | |
| Phobius | 90 | 94 | 5 | - | – | |
| Phobius | 95 | 121 | 27 | - | – | |
| TMHMM | 100 | 122 | 23 | - | – | |
| Phobius | 122 | 124 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0078400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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