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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004776
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We have found 75 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.374s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0103729.1
n.a. auxin efflux carrier-like protein [Arabidopsis thaliana] gi|334182727|ref|NP_683316.2| chr0 44256909 44258543 -
2 domain predictions
2 GO terms
Lj0g3v0172269.1
n.a. Auxin efflux carrier family protein [Theobroma cacao] gi|508709005|gb|EOY00902.1| chr0 82701385 82703610 -
2 domain predictions
2 GO terms
Lj0g3v0178829.1
n.a. PREDICTED: probable auxin efflux carrier component 6-like [Glycine max] gi|356551177|ref|XP_003543954.1| chr0 86735459 86738068 -
2 domain predictions
2 GO terms
Lj0g3v0178879.1
n.a. PREDICTED: auxin efflux carrier component 3-like [Glycine max] gi|356521538|ref|XP_003529411.1| chr0 86789505 86793892 -
2 domain predictions
2 GO terms
Lj0g3v0276789.1
n.a. Auxin efflux carrier family protein [Theobroma cacao] gi|508727072|gb|EOY18969.1| chr0 143636709 143640792 -
2 domain predictions
2 GO terms
Lj0g3v0320849.1
n.a. auxin efflux carrier protein [Medicago truncatula] gi|25986775|gb|AAM55299.1| chr0 167439311 167444753 -
2 domain predictions
2 GO terms
Lj0g3v0320849.2
n.a. auxin efflux carrier protein [Medicago truncatula] gi|25986775|gb|AAM55299.1| chr0 167439311 167444753 -
2 domain predictions
2 GO terms
Lj1g3v0264160.1
n.a. PREDICTED: probable auxin efflux carrier component 6-like [Glycine max] gi|356552773|ref|XP_003544737.1| chr1 2789755 2794875 +
2 domain predictions
2 GO terms
Lj1g3v0264160.2
n.a. PREDICTED: probable auxin efflux carrier component 6-like [Glycine max] gi|356552773|ref|XP_003544737.1| chr1 2789755 2790507 +
2 domain predictions
2 GO terms
Lj1g3v2556370.1
n.a. Auxin efflux carrier component auxin transport protein [Medicago truncatula] gi|357506749|ref|XP_003623663.1| chr1 29386400 29392073 +
2 domain predictions
2 GO terms
Lj1g3v2809230.1
n.a. Auxin Efflux Carrier [Medicago truncatula] gi|357507711|ref|XP_003624144.1| chr1 31941133 31944693 -
2 domain predictions
2 GO terms
Lj1g3v4106960.1
n.a. UML [Lotus japonicus] gi|430804040|gb|AGA83304.1| chr1 48775485 48778882 +
2 domain predictions
2 GO terms
Lj2g3v0661480.1
n.a. PIN4b [Glycine max] gi|481044552|gb|AGJ95058.1| chr2 10687684 10690652 -
2 domain predictions
2 GO terms
Lj2g3v0661490.1
n.a. PIN4b [Glycine max] gi|481044552|gb|AGJ95058.1| chr2 10688104 10689440 -
2 domain predictions
2 GO terms
Lj2g3v0661500.1
n.a. Auxin efflux facilitator isoform 2, partial [Theobroma cacao] gi|508774092|gb|EOY21348.1| chr2 10689651 10690318 -
2 domain predictions
2 GO terms
Lj2g3v1034600.1
n.a. PIN11 [Medicago truncatula] gi|481044534|gb|AGJ95049.1| chr2 16540187 16542852 -
2 domain predictions
2 GO terms
Lj2g3v1573100.1
n.a. Auxin efflux carrier protein [Medicago truncatula] gi|357484287|ref|XP_003612431.1| chr2 25056168 25076933 -
2 domain predictions
2 GO terms
Lj2g3v1589590.1
n.a. Auxin efflux carrier family protein isoform 1 [Theobroma cacao] gi|508698726|gb|EOX90622.1| chr2 25256717 25259890 +
2 domain predictions
2 GO terms
Lj3g3v0526190.1
n.a. Auxin efflux carrier family protein [Theobroma cacao] gi|508727086|gb|EOY18983.1| chr3 5985243 5990019 -
2 domain predictions
2 GO terms
Lj3g3v0526200.1
n.a. Auxin efflux carrier family protein [Theobroma cacao] gi|508727086|gb|EOY18983.1| chr3 5991836 5995093 -
2 domain predictions
2 GO terms
Lj3g3v3735560.1
n.a. TPA_exp: auxin efflux carrier protein [Medicago truncatula] gi|58339253|tpg|DAA05219.1| chr3 45142021 45145058 -
2 domain predictions
2 GO terms
Lj3g3v3735560.2
n.a. TPA_exp: auxin efflux carrier protein [Medicago truncatula] gi|58339253|tpg|DAA05219.1| chr3 45142776 45145058 -
2 domain predictions
2 GO terms
Lj4g3v0633470.1
n.a. PREDICTED: auxin efflux carrier component 3-like [Cicer arietinum] gi|502143228|ref|XP_004505266.1| chr4 10021173 10025951 +
2 domain predictions
2 GO terms
Lj4g3v2139970.1
n.a. PIN2a [Glycine max] gi|481044558|gb|AGJ95061.1| chr4 29541110 29544879 -
2 domain predictions
2 GO terms
Lj4g3v3114900.1
n.a. PIN4b [Glycine max] gi|481044552|gb|AGJ95058.1| chr4 42169820 42172788 +
2 domain predictions
2 GO terms
Lj4g3v3114920.1
n.a. PIN4b [Glycine max] gi|481044552|gb|AGJ95058.1| chr4 42171032 42172368 +
2 domain predictions
2 GO terms
Lj5g3v0323470.1
n.a. Auxin efflux carrier protein [Medicago truncatula] gi|357484287|ref|XP_003612431.1| chr5 3279626 3283952 +
2 domain predictions
2 GO terms
Lj5g3v1174510.1
n.a. Putative transporter [Aegilops tauschii] gi|475377922|gb|EMT00616.1| chr5 18860664 18864324 -
2 domain predictions
2 GO terms
Lj5g3v1174510.2
n.a. auxin efflux carrier family protein [Populus trichocarpa] gi|224117652|ref|XP_002317634.1| chr5 18860664 18864324 -
2 domain predictions
2 GO terms
Lj5g3v2166080.1
n.a. Auxin efflux carrier family protein [Theobroma cacao] gi|508709005|gb|EOY00902.1| chr5 30971784 30974120 +
2 domain predictions
2 GO terms
LotjaGi1g1v0168600.1
n.a. Auxin efflux carrier component; TAIR: AT1G77110.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9SQH6|PIN6_ARATH Auxin efflux carrier component 6; TrEMBL-Plants: tr|I1MAE5|I1MAE5_SOYBN Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0168600 LjG1.1_chr1 32038232 32058400 +
2 domain predictions
2 GO terms
LotjaGi1g1v0460500.1
n.a. Auxin efflux carrier family protein; TAIR: AT5G01990.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LZN2|PILS6_ARATH Protein PIN-LIKES 6; TrEMBL-Plants: tr|I3T5T5|I3T5T5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0460500 LjG1.1_chr1 96445287 96451258 -
2 domain predictions
2 GO terms
LotjaGi1g1v0460500.2
n.a. Auxin efflux carrier family protein; TAIR: AT5G01990.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LZN2|PILS6_ARATH Protein PIN-LIKES 6; TrEMBL-Plants: tr|I3T5T5|I3T5T5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0460500 LjG1.1_chr1 96445612 96450729 -
2 domain predictions
2 GO terms
LotjaGi1g1v0484100.1
n.a. Auxin efflux carrier component; TAIR: AT5G16530.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9FFD0|PIN5_ARATH Auxin efflux carrier component 5; TrEMBL-Plants: tr|A0A0L9U3R1|A0A0L9U3R1_PHAAN Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0484100 LjG1.1_chr1 99761289 99764989 +
2 domain predictions
2 GO terms
LotjaGi1g1v0498200.1
n.a. Auxin efflux carrier component; TAIR: AT5G15100.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LFP6|PIN8_ARATH Auxin efflux carrier component 8; TrEMBL-Plants: tr|Q5FV66|Q5FV66_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0498200 LjG1.1_chr1 101427416 101431074 -
2 domain predictions
2 GO terms
LotjaGi1g1v0498200.2
n.a. Auxin efflux carrier component; TAIR: AT5G15100.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LFP6|PIN8_ARATH Auxin efflux carrier component 8; TrEMBL-Plants: tr|Q5FV66|Q5FV66_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0498200 LjG1.1_chr1 101427593 101430948 -
2 domain predictions
2 GO terms
LotjaGi1g1v0498200.3
n.a. Auxin efflux carrier component; TAIR: AT5G15100.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LFP6|PIN8_ARATH Auxin efflux carrier component 8; TrEMBL-Plants: tr|Q5FV66|Q5FV66_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0498200 LjG1.1_chr1 101427593 101430979 -
2 domain predictions
2 GO terms
LotjaGi1g1v0498200.4
n.a. Auxin efflux carrier component; TAIR: AT5G15100.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LFP6|PIN8_ARATH Auxin efflux carrier component 8; TrEMBL-Plants: tr|I1N4A8|I1N4A8_SOYBN Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0498200 LjG1.1_chr1 101427741 101430948 -
2 domain predictions
2 GO terms
LotjaGi1g1v0661500.1
n.a. Auxin efflux carrier component; TAIR: AT1G73590.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c; TrEMBL-Plants: tr|L0GC85|L0GC85_LOTJA Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0661500 LjG1.1_chr1 122240675 122244153 +
2 domain predictions
2 GO terms
LotjaGi1g1v0661500.2
n.a. Auxin efflux carrier component; TAIR: AT5G57090.2 Auxin efflux carrier family protein; Swiss-Prot: sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c; TrEMBL-Plants: tr|M9WUK9|M9WUK9_SOYBN Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0661500 LjG1.1_chr1 122242511 122243515 +
2 domain predictions
2 GO terms
LotjaGi1g1v0661500.3
n.a. Auxin efflux carrier component; TAIR: AT2G01420.1 Auxin efflux carrier family protein; Swiss-Prot: sp|P0C0X5|PIN1B_ORYSJ Probable auxin efflux carrier component 1b; TrEMBL-Plants: tr|K7KEN1|K7KEN1_SOYBN Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0661500 LjG1.1_chr1 122242793 122243515 +
2 domain predictions
2 GO terms
LotjaGi2g1v0062600.1
n.a. Auxin efflux carrier component; TAIR: AT1G70940.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3; TrEMBL-Plants: tr|B9X291|B9X291_PEA Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0062600 LjG1.1_chr2 14521264 14526808 +
2 domain predictions
2 GO terms
LotjaGi2g1v0062600.2
n.a. Auxin efflux carrier component; TAIR: AT1G70940.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3; TrEMBL-Plants: tr|B9X291|B9X291_PEA Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0062600 LjG1.1_chr2 14521312 14527012 +
2 domain predictions
2 GO terms
LotjaGi2g1v0062600.3
n.a. Auxin efflux carrier component; TAIR: AT2G01420.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c; TrEMBL-Plants: tr|Q8GV75|Q8GV75_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0062600 LjG1.1_chr2 14523325 14526149 +
2 domain predictions
2 GO terms
LotjaGi2g1v0062600.4
n.a. Auxin efflux carrier component; TAIR: AT2G01420.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c; TrEMBL-Plants: tr|K7L258|K7L258_SOYBN Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0062600 LjG1.1_chr2 14523675 14526149 +
2 domain predictions
2 GO terms
LotjaGi2g1v0196800.1
n.a. Auxin efflux carrier component; TAIR: AT1G73590.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q5SMQ9|PIN1A_ORYSJ Auxin efflux carrier component 1a; TrEMBL-Plants: tr|M9WLU7|M9WLU7_SOYBN Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0196800 LjG1.1_chr2 63161085 63165639 -
2 domain predictions
2 GO terms
LotjaGi2g1v0196800.2
n.a. Auxin efflux carrier component; TAIR: AT2G01420.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c; TrEMBL-Plants: tr|A0A165XG59|A0A165XG59_DAUCA Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0196800 LjG1.1_chr2 63161541 63163310 -
2 domain predictions
2 GO terms
LotjaGi2g1v0196800.3
n.a. Auxin efflux carrier component; TAIR: AT5G57090.2 Auxin efflux carrier family protein; Swiss-Prot: sp|Q0IQA5|PIN1D_ORYSJ Probable auxin efflux carrier component 1d; TrEMBL-Plants: tr|V7C3I7|V7C3I7_PHAVU Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0196800 LjG1.1_chr2 63161541 63163621 -
2 domain predictions
2 GO terms
LotjaGi2g1v0196800.4
n.a. Auxin efflux carrier component; TAIR: AT1G73590.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C6B8|PINI_ARATH Auxin efflux carrier component 1; TrEMBL-Plants: tr|C6ZJZ4|C6ZJZ4_SOYBN Auxin efflux carrier protein 1; Found in the gene: LotjaGi2g1v0196800 LjG1.1_chr2 63162457 63164924 -
2 domain predictions
2 GO terms
LotjaGi2g1v0256600.1
n.a. Auxin efflux carrier component; TAIR: AT5G15100.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LFP6|PIN8_ARATH Auxin efflux carrier component 8; TrEMBL-Plants: tr|M9WUH6|M9WUH6_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi2g1v0256600 LjG1.1_chr2 72289265 72292045 -
2 domain predictions
2 GO terms