Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0087400 |
| Transcript ID | LotjaGi4g1v0087400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT1G13730.1 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|A0A1J7G1P1|A0A1J7G1P1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0087400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11621257..11626446) extracted from Lotus japonicus Gifu genome v1.2.
CTCCCACCTGTTGTCAAAACAAGACACAGATAAAGAACACAAAGTAAGCCGATTGAGATCTGCAAGCAAACTCGAAAACG CTGGGCCTGGTCTCAACTCAACCTAAAAAACCAAACCAAACCGAAAAACCCTTTTTCCCACAACCAAATATAAATATTGA AATCTTTTCATTTTCTCAGGTCTCTCTCTCAAGTGTACTCAACCGCCTCACTCTTCTCTCTCTCAGCCTCAGCCACCGCC ACCTCCTTCCTCTTCCTCTTCCTCTTCCTCTTCGACTTTGATCACTCCACCGGAGGTGAGGTACCACCATTTCTCTCTCG TGATTTCGATTTTCATTTGATCCGTGTTTTCTCTCTCGCCGATTCATCATTTTTGTTCTCTGTCTTATTATAATTATTAT TAAACTGTTTTTCTGCATGTCATGGTTGATTAGGGTTTGCTTGTTAGGATTTAGGGTTTTGAAATGATTTTTTTTTAGCT TTGTCTAGTTTTAGGTTTATTCTAATTATTATTCTGGTTTCATATTTGAATCGTTTTGCAATGCATGGCAGGGTTATGTA TAATGTTTATACGTTATTTGTTTAAATTAAAGGAAATTATTTTGTTAGTTGATTGAATTTATGTTGTGAATTTATTGTGT TTGATTTGCGTTTTTTGTGAATTAATTATTTGATTTTTTGTGGTGCCACAGAGATGGCTGCGACTGATGGAGCTCCCACC CCTCAGATGGTTGGCAATGCTTTTGTGGAGCAGTACTACTCAATTCTCCATCATGATCCGGAGCAGGTTCACAGGTTTTA CCATGAGACGAGTATCCTCAGTCGACCTGAAGAAGATGGTACTATGACCACGGTCACTACTACTGTCGTAAGTACCCGCC ATACACTTAAATGAATTATCCTATATATATACCGAGCTGTATAATTGCAGGTGTTGCTCATGTTAAACTGTATTTATCCT ATGATTTTTCATGTCTTGATCTGTTATTGCAAAACTTCCAAATTGATGTTTTTTAATATTAAAAAATATTAGTTATTTAA CGGACTCGAATTAAATTTTACCGGGAGCACCTAAGTGTGGTTTATGTGCTTTACTTGAGTGGGGGAGGGGACAGGGTTTT TGACCAATAAAGAATAAAAAACTATTTATCAGAATAATATTTTTTTTTACTAATGTAGGCAATTTATGCCACGTGGGTAG TTGATGTTGAAAGCCGAAAGTGGCGGACTGGCGGTTAGAAAACGCCAACTTGTTCAGCAGTTTTGGCGATCCCTGCGCCT CAACTAAAAGCTGGCAGACAAATACATTCTGGAGCTAAATTTATCACTCTACCCTATATTGATCATTTTGAACAAAAAGA ATCAAGCCTACCTCTTCTCTCCCTATATAGATCTTTCAGGCGATTGCGCCTGCGACAACAATTTACCTTGTTGCGGCAAT AGGGAAAATACAGCAATTTTTTTATCAATTAGGAACCAGCCTCACATGATTGTCACATGTGCTTTTGTCCCTTTAAAACT GCCTCCATAAAAAATCGGGGAGCAACCGATACAGTACGTAATTACGTTGAAACCCTGTAAACACATAATCTCTCTTCTTC CTCCATTGACCTCGATTCCTTTTTTCTCTATCATCTCTTGCGACTTAGAGTAGGTTTTTGGCGAGCTTCCTGGGCCACCA ACAATAGTTACATCATGCTCTGTTTTTTTAATAAATTCTTCCTTTACCTTCTGTTTTTTGCTATTTTGTTTTCCATCTTT CATTGTTATTTGTTTTCTTGCTCTTTTAATAACTTGTTTTTTTTATCTTGTGACAAGCTTAAATGAATTTCTTACTTATT TCAACCTCTATGTGACTTCCTCTTTTTGCCCGTGATGCTATCCGCTATATGACAAGCAGATTTTCCTTGTTCTACGATTA ACAAACTGGTCTGGAGAGGATGACCTTCATTTAAACCTTCCCTCTTTTAATTGTTGTATATTTGGCCTTTTTGCACACCT TGTCCCACATCATTAAGAAATCACTTTCATCATGCTTTGAATATTTTTAGTAGATGTCTTTATATTAATTGTGTGTGCAT CTTTTGTTTTTATCAACATTTTTTGTACTCCTTACTTAAAGTATTAGAGATAATCTTGTTTGCCCTGTACAGATTTCATG ATAAATGTAGTACTAGCAATCCCCCTTTTACTGCTCCAGCTCATGTGTAACTCAGTTCATTTGAACTCTCATCTAAGTAT TGTGTTTTTCATAATTTGAGTTTGATATGGTGTATTGCAATAAATGATTTTACATCTGCTGACTTCAATGATTTTTGTTT TGGTACAGGAAATAAATAAAAAGATACTCTCTCAGGATTACAAGAGCTTTAGGGTGGAGATTCTGAGTGCTGATTCTCAG CCTTCATATAAGGAAGGTGTAATAGTTGCAGTGACTGGCTGCTTAACTGGAACTGACAATATGAAGCGGAAGTTTGCTCA GTCATTTTTCCTAGCTCCACAGGACAAGGGCTACTTTGTTTTGAATGATGTTTTTAGATATGTTGATGAGTACAAGTCTG TTGATATTGAGTCTGTGCCATCACGTGATGCTGATGAAATTACTCTATCTGATGCTTTTGCCCCCGAGCCTGGTAAATAT TCTATGTAGTTAGTAGCTTGAGAGGGGTTTACATTTTTTGAAAAGAAATTTTCTGAACTGTTCGATTTAATGGATACAGA TATACAATTATATTTACTGGATAATTGATAAGGATGCTAGAATATATATATATATATATATATATATATATATATATACA CATACATACATACACACATGAATCTATCGACAAATGAATTTGAAACTAACTTCTGATGCTATTTCGTTCAAAATATATGG TCTGTCATCCTGTGCCTCCCAACATTTTATATAATTGTTAAATGTTTTGGTTTTTATGATTTTGTTTATGGTTGTGAATA TAGAGCCCAATCATGTTCCTGAAGACATTCCTCCTAGTCAAACTGCTATTGCTGAAACTGATGCTAGCATCAGGAAAGAA GTGTCTCAACCACTGGAGAATGGAAAATTATCAGTTACTGAAAAGGTGATTCCTGTTAATCATGTTGAAGAGCCAAATCA TCAGGAACATCACTCAAGCTCTGAGAAAGCTGATTCTAATACACAGGAGGATGCTCCTAAGAAGTCTTTTGCATCCATTG TAAGTTTTATTTTTTTGTTTATTATTTCTTCATTTTGTTTTGTAGTGTCTGACAATAACTTTTCTGTAATGATTTCTTCC AGGTCAATGCATTGAATGAAAATGCTGCTCCCTTCCATGTGAGGACTTCCCCTATGAAACCTGTAGAACAGCCTCGTGTC TCTAGCAAGCCTGCATCTGAAGCTCAAGCTCCTATCGCTGATGTCCTACTGGAAAAGAATAATGAGAATGCAGGTTAATT TACCATTTTAGTGACTAGTATGGTCAATTTTATACAATTCAGTTAAAAGTTGCCTCATTTGTTCAGGATGTTATCTCATA ACTAATAACCTTCACAGGTAAGGCTCATGCCATATTTGTTGCGAATTTACCTATGAATGCTACCGTAGAGCAACTGGAAC GGGCTTTTGTGGAATTTGGGCCCATTAAAACCAATGGTATTCAAGTTAGAAGTAATAAGGTTAGTCTGTCATAATCATTT CTACTATCAAGTTTAGTAAATGCAGTTTAAAGTTAAACAACTACAGGATATAATTTTTTCTTTTTTCTTTTTCAGCAACA AGGATCTTGTTTTGGTTTTGTGGAATTTGAATCTGCTGCGTCAATGCAAAGTGCACTTGAGGTAGAGTTTGGAATTTTTA TTGGTAGTTAAAAATCTATTGTCAAGGTCCTTTGTTGAATGTTGATTGGGTTTCAGAAATCTTTATCGTTGAATGTTTTA TTGTCAATGCAAATTGCAGGATATTTTTTTATCTATCGTGAGGAGTGATGTTTCCCTTTCTTTTGAATTTTCAATGCATA ATAACTATATTTTCCAATCAGCGCTGCTATATGTTCTGAAAAGCAGGCTCTTTGAAACCCATGATCAGAATTTTGTTCAC TGCGTACAGCACACACTTTTTGAAACAAAACTAAACTAGTTGCCTGTTTTTACAGATCTGAAAACCAATCAAATTAAATT TTTCCTACTCGTACCATTTAGTATTTCACTTTTCCAATGCATTAGAAGCGCATGGTTCCAATTGCAAGCTATTCCATATG ACAAGCATGTGTACTTTTTCAGGCCGCTGTTATATTGGACAACCGCAGACTATCCATTGAAGAAAGGCGAGGCAAGTGTG ACATTATTTTTGTTAAATTTGAACATCCTCATTTTTCAGTTTTCATGTTTTGTTTATTATTTCCCATGAGTTCTGTCTTC GACTAATGTTTGCTCTAAAAAGTGGTGTATAATCGTGATTTGCTTCCTTTCTAGATTCTCTAAAACCAATGCAAATATTA ATTTAAGTTAAAACTGCGAGGGTATAGATTCATGTACCTGGTGACATTGGGAACATTTAGAACATTGTCGCTAAATATTT TGTATTATTTGTTGCAGCTAATAATGACAGGGCCAGATATCCATCAGGACGCGGTGGATACCGAAATGACAGAAATGATA GCTTCAGGGGCCGTGGCAACTTCGGTGGTGGCAACTTTGGTGGTGGCCGTGGTGGTGGCTACAACGGCAGGAATGATTTT GAGAGGCGAAATGAGTTCTCTGGCCGACCACGAGGTGGCAATAATATGGGACGTAACAATGGAGAAACTGCGCCAAGGAG TTATCAGAATGGTCAGACTGGTCAGAATGGAGGAAGAGTCGCTCGCCAACCGGTGAAAGCTCAGTAAAGCGCTTTTAGTT GGTAATTTAGTTACAACGGAATTTTCTTATAGATAGCGGCATCTAAGGGATTTTGGTTTTCATTTGGATTAGAGTCTTTT TCTTTTAATAGCTGTCATGATTCTTTCGGGCAGTTGTTTTTGGTTAAATTAAGTGATTCCATATTTAGTTCTCTCCCGAT TTTTGTTACATTTTGTATCTAAGTTTTGGTATGATTGTTTTGTGGAATTGGCTACATTTATATACCATTTTTTAAGAAAC AAAATCAATGTTTCGTGCTAACATTTGTTTTATTGGTTGAAGTTCATGCTGATCCTATCAAATAGGTGGG
CDS sequence (LotjaGi4g1v0087400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCGACTGATGGAGCTCCCACCCCTCAGATGGTTGGCAATGCTTTTGTGGAGCAGTACTACTCAATTCTCCATCA TGATCCGGAGCAGGTTCACAGGTTTTACCATGAGACGAGTATCCTCAGTCGACCTGAAGAAGATGGTACTATGACCACGG TCACTACTACTGTCGAAATAAATAAAAAGATACTCTCTCAGGATTACAAGAGCTTTAGGGTGGAGATTCTGAGTGCTGAT TCTCAGCCTTCATATAAGGAAGGTGTAATAGTTGCAGTGACTGGCTGCTTAACTGGAACTGACAATATGAAGCGGAAGTT TGCTCAGTCATTTTTCCTAGCTCCACAGGACAAGGGCTACTTTGTTTTGAATGATGTTTTTAGATATGTTGATGAGTACA AGTCTGTTGATATTGAGTCTGTGCCATCACGTGATGCTGATGAAATTACTCTATCTGATGCTTTTGCCCCCGAGCCTGAG CCCAATCATGTTCCTGAAGACATTCCTCCTAGTCAAACTGCTATTGCTGAAACTGATGCTAGCATCAGGAAAGAAGTGTC TCAACCACTGGAGAATGGAAAATTATCAGTTACTGAAAAGGTGATTCCTGTTAATCATGTTGAAGAGCCAAATCATCAGG AACATCACTCAAGCTCTGAGAAAGCTGATTCTAATACACAGGAGGATGCTCCTAAGAAGTCTTTTGCATCCATTGTCAAT GCATTGAATGAAAATGCTGCTCCCTTCCATGTGAGGACTTCCCCTATGAAACCTGTAGAACAGCCTCGTGTCTCTAGCAA GCCTGCATCTGAAGCTCAAGCTCCTATCGCTGATGTCCTACTGGAAAAGAATAATGAGAATGCAGGTAAGGCTCATGCCA TATTTGTTGCGAATTTACCTATGAATGCTACCGTAGAGCAACTGGAACGGGCTTTTGTGGAATTTGGGCCCATTAAAACC AATGGTATTCAAGTTAGAAGTAATAAGCAACAAGGATCTTGTTTTGGTTTTGTGGAATTTGAATCTGCTGCGTCAATGCA AAGTGCACTTGAGGCCGCTGTTATATTGGACAACCGCAGACTATCCATTGAAGAAAGGCGAGCTAATAATGACAGGGCCA GATATCCATCAGGACGCGGTGGATACCGAAATGACAGAAATGATAGCTTCAGGGGCCGTGGCAACTTCGGTGGTGGCAAC TTTGGTGGTGGCCGTGGTGGTGGCTACAACGGCAGGAATGATTTTGAGAGGCGAAATGAGTTCTCTGGCCGACCACGAGG TGGCAATAATATGGGACGTAACAATGGAGAAACTGCGCCAAGGAGTTATCAGAATGGTCAGACTGGTCAGAATGGAGGAA GAGTCGCTCGCCAACCGGTGAAAGCTCAGTAA
Protein sequence (LotjaGi4g1v0087400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATDGAPTPQMVGNAFVEQYYSILHHDPEQVHRFYHETSILSRPEEDGTMTTVTTTVEINKKILSQDYKSFRVEILSAD SQPSYKEGVIVAVTGCLTGTDNMKRKFAQSFFLAPQDKGYFVLNDVFRYVDEYKSVDIESVPSRDADEITLSDAFAPEPE PNHVPEDIPPSQTAIAETDASIRKEVSQPLENGKLSVTEKVIPVNHVEEPNHQEHHSSSEKADSNTQEDAPKKSFASIVN ALNENAAPFHVRTSPMKPVEQPRVSSKPASEAQAPIADVLLEKNNENAGKAHAIFVANLPMNATVEQLERAFVEFGPIKT NGIQVRSNKQQGSCFGFVEFESAASMQSALEAAVILDNRRLSIEERRANNDRARYPSGRGGYRNDRNDSFRGRGNFGGGN FGGGRGGGYNGRNDFERRNEFSGRPRGGNNMGRNNGETAPRSYQNGQTGQNGGRVARQPVKAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 134 | 132 | 1.0E-37 | – | |
| PANTHER | 6 | 418 | 413 | 3.3E-152 | ||
| PANTHER | 6 | 418 | 413 | 3.3E-152 | – | |
| CDD | 9 | 131 | 123 | 7.40861E-44 | ||
| SUPERFAMILY | 9 | 130 | 122 | 6.82E-38 | ||
| Pfam | 13 | 129 | 117 | 5.9E-30 | ||
| ProSiteProfiles | 13 | 129 | 117 | 33.568 | ||
| MobiDBLite | 209 | 232 | 24 | - | – | |
| MobiDBLite | 209 | 228 | 20 | - | – | |
| MobiDBLite | 248 | 271 | 24 | - | – | |
| Gene3D | 281 | 420 | 140 | 6.7E-16 | ||
| SUPERFAMILY | 289 | 393 | 105 | 3.39E-15 | ||
| ProSiteProfiles | 292 | 375 | 84 | 13.294 | ||
| SMART | 293 | 364 | 72 | 1.5E-10 | ||
| Pfam | 294 | 352 | 59 | 2.4E-12 | ||
| CDD | 294 | 364 | 71 | 1.75785E-13 | – | |
| MobiDBLite | 371 | 390 | 20 | - | – | |
| MobiDBLite | 371 | 463 | 93 | - | – | |
| MobiDBLite | 428 | 454 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0087400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…