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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR039539
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 9 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.699s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0513200.1
n.a. RNA binding protein, putative; TAIR: AT5G60980.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|I1KWF6|I1KWF6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0513200 LjG1.1_chr1 103523591 103529523 -
2 domain predictions
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LotjaGi1g1v0591700.1
n.a. Nuclear transport factor 2 family protein with RNA binding domain; TAIR: AT3G25150.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|K7MSK4|K7MSK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0591700 LjG1.1_chr1 113161748 113167086 -
2 domain predictions
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LotjaGi1g1v0591700.2
n.a. RNA binding protein, putative; TAIR: AT3G25150.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|K7MSK4|K7MSK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0591700 LjG1.1_chr1 113161748 113167086 -
2 domain predictions
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LotjaGi1g1v0591700.3
n.a. Nuclear transport factor 2 family protein with RNA binding domain; TAIR: AT3G25150.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|K7MSK4|K7MSK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0591700 LjG1.1_chr1 113161975 113167066 -
2 domain predictions
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LotjaGi1g1v0704000.1
n.a. Nuclear transport factor 2 family protein with RNA binding domain; TAIR: AT5G43960.1 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|K7MYR4|K7MYR4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0704000 LjG1.1_chr1 127211189 127220442 -
2 domain predictions
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LotjaGi4g1v0087400.1
n.a. RNA binding protein, putative; TAIR: AT3G25150.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|A0A0S3R2J6|A0A0S3R2J6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0087400 LjG1.1_chr4 11621194 11626717 +
2 domain predictions
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LotjaGi4g1v0087400.2
n.a. RNA binding protein, putative; TAIR: AT1G13730.1 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|A0A1J7G1P1|A0A1J7G1P1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0087400 LjG1.1_chr4 11621257 11626446 +
2 domain predictions
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LotjaGi4g1v0255500.1
n.a. Nuclear transport factor 2 family protein with RNA binding domain; TAIR: AT5G60980.1 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2; TrEMBL-Plants: tr|A0A151SPE4|A0A151SPE4_CAJCA Ras GTPase-activating protein-binding protein 1; Found in the gene: LotjaGi4g1v0255500 LjG1.1_chr4 60934628 60942781 -
2 domain predictions
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LotjaGi6g1v0010100.1
n.a. Nuclear transport factor 2 family protein with RNA binding domain; TAIR: AT5G43960.1 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|A0A0L9TV93|A0A0L9TV93_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0010100 LjG1.1_chr6 1877703 1885063 +
2 domain predictions
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