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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0098700 |
| Transcript ID | LotjaGi4g1v0098700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal transporter; TAIR: AT2G23150.1 natural resistance-associated macrophage protein 3; Swiss-Prot: sp|Q9SNV9|NRAM3_ARATH Metal transporter Nramp3; TrEMBL-Plants: tr|I1K299|I1K299_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0098700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13354620..13358652) extracted from Lotus japonicus Gifu genome v1.2.
CACCATTCATAAAAAATGTTCCAAACCTGCAACAAAATGATAAAATATAAGAAAGAACCTCTCATAAAAATAACTCATAA AATAAACAACAACAACAACAACAACAACGTTTTGATATTTTCAACTACGCGATGGCTCGGAACCCGAGAGAACAGGAGCA GCAGCCACTGTTGGAAGTAGAGGAAGAGGAAGAGACGGCGTATGACTCATCGGAGAAGATTGTGGTGGTGGGAATCGACG AGGAAGAGGACTACGGCGGCAAGGTTCCGCCGTTTTCATGGAAGAAGCTATGGCGGTTCACAGGGCCAGGGTTTCTCATG TGCATAGCGTTTCTCGATCCGGGGAACCTGGAGGGGGACTTACAAGCGGGTGCCATTGCAGGGTACTCGTTGCTGTGGCT TTTGATGTGGGCTACTGGCATGGGGCTGCTAATTCAGCTCTTGTCGGCGCGGCTTGGAGTCGCCACCGGGAAGCACTTGG CGGAGCTGTGCAGGGAGGAGTACCCCACGTGGGCTAGGATGGTGCTGTGGGTTATGGCTGAGGTTGCTCTCATTGGTTCT GATATTCAAGAGGTTATTGGTAGTGCTATTGCGATAAGGATTCTCAGTAATGGGGTTGTGCCCCTTTGGGCTGGGGTTGT CATTACTGCTCTTGATTGGTAATCAATTTCATTCATTCAATTCGCTTTTACTTTTAATTTGTTGGATATTTGGTAGGGAC CCTTTTTTGTGGTGCTTTCAAAATTGGGTTATTCACAAGTATGAGGTTTTGTTGTGAGTATAATTTCAACCAAATATCTA TTTAAAATTCCTCCTTTGAAGCCCTCAAAAGGTTTTGATAGGTTATACTGTAGAAGAGTGGAAAGCTTTTGCAAATCAAT TTAGGTTCCAAAATTAGTAATTAAACTTTTCTAATGACATGTCAAGACAGATAGTAATAAGTTTTAAAATTTGGATTTTA TTGATGAACAAAGAGACAATAGCACAATTCTATAAATTAGAGAGGGTATGAGTGAGCTCCTCTAATAGTAGGAAGCTATG AAGTGTAGATTTTGGATAGATATGTACATTGACTTTTCTGTCTACCCTTCAATCAAATACAATCCGAGTGTTCTGTTGCC TTGTTACAGTTTTATTTTTCTCTTTCTGGAGAACTATGGTGTGAGGTCATTGGAAGCATTTTTTGGTGTTCTTATTGGGA TAATGGCACTGGCGTTCGCGTGGATGTTTGGTGAAACACAGCCCAGCGGCAAGGAACTTCTTGTTGGTAAGGAGTTATTA CATTGATTTAGACCTGCGTGAATTCAAAATCACAGTATGCTATGCTATGAGTAAATTGTTTGTTGTCTTGTCCCTCTTGC TTTAAATCTGACAGGCTTTTGTCTTTGTAGGCATTTTGGTTCCAAAACTCAGCTCCAGAACTATACAGCAGGCTGTTGGA GTTGTGGGCTGCCTTATAATGCCTTACAATGTATTCTTGCACTCTGCTCTTGTTCAATCGAGGAAGATTGACCACAGCAA CAAAGGACGGGTTCAAGAAGCTCTTAACTATTACTCTATAGAGTCCACCCTTGCACTTGTCGTCTCCTTTGTCATTAACA TATTTGTGACAACTGTGTTTGCCAAGGGGTTTTATGGTTCTGAAGTAGCAGATAGCATTGGTCTTGTAAATGCAGGACAG TATCTTCAGGACGCGTATGGTGGTGGAGTAGTTCCAATTTTATATATATGGGGTATTGGGTTATTGGCAGCCGGCCAAAG TAGCACTATTGCTGGTACTTATGCCGGACAATTTATCATGGGAGGGTTTCTAAATTTAAAGATCAAAAAATGGATGAGGG CGTTAATTACCCGAAGTTGTGCAATAGTACCAACCATGATTGTTGCTCTTATATTTGATTCCTCAGAGCAATCGCTGGAT GTTCTGAATCAGTGGCTTAATGTTCTTCAGTCAGTCCAAATCCCCTTTGCTGTTATTCCTTTACTCTGTCTGGTTTCCAA GGAGGAGATAATGGGCACTTTCAAAATTGGTGCTGTCCTCAAGGTATGCTGTTCTTTAATCTGCACTTTGGTGACACTGA TCACTTGTCATATACACATCATTGGTTCACATATTCGGTGAAGGACTTTGTGATGCCAAGTTGCCCACATAACTCCTTTT GTTGGACATTACTATCTGTGCATCAGTGCATGCCTTATATTATTCATCAGTCAAATCAAACCTTAATTTACTTAGGAAGG ATATAATTCTGAAGTAGCTCAATGTAGATGTTTTCTTGCAGTTCAGACTAGAGAATATAGAACTGACCCATGCATTCCTA ATCTCTTCCGCAATTTAGAGTTAGATTCTATAGAGAAAAATTAAGGGGCATGATTATACTGTCCTGTCTAGAGAATTAAA AGGAGGTGTATGAATCCAGTTGACTAGTTTCTTCACTTCTTTTTCCTTATGATCCTACTTCTTTACTTCTTTCTCACATT AAAAGGAGCATGCAACACTGAGAATTAAAAGGAGGTGTATGAATCCAGCATAATGCAGGAAAGTGGCACAATGCCCAGTT TTAAGGATGCACCAAAGAACATACAGTCCAGAGACCCCAGCATAATACATGAAATCCACTGGGCATTGTGCCACTTTCCT GCATTATGCTGGGGTCTCTGGACTGTATGTTCTTTTATTTTATATTTTTTTAAATCAAACTTTAAAATGCAATGTTTCAA GGTGATTTATGAAACATTATCCCCAATACAATTCTTCGTCCATAACAATCTGGAGAAACATATGCTATATTTATAGTGAT GGTGATGTATCACATTGTCTATAACTGTAGTCCGAAAGCTAGGAAGGTAGAAGGCTTTTGTTCACTTGACATCTTGATGA TATAACTCTAGACATGGTGAACTTGATTGACTTATGTAGTCTAAAGACATTTGTTTCAAAGCAAGCCTTGTTTTTCCCTT TCTTTTCTCTTTTGGTAGATTGATGCTGCTTGTTTCTCCATTGATCTAGCTCAATGGGTTTTGACTTTTACAGTTTGATA CTTTGACTTGGGATTAAGTGTTCTTAAACCATAATAACTTATGTGCACCTTGCATACATTTGGTTTCTGCACCATCACCC CCTTCTTCTTCCCATGTCCTGCTTATTGTCTGTTTTCATTGATTAGTAGAAGACTGAGTAGCTTCTCATGTGAATACAGA CTATTTCTTGGCTTGTGGCTGCTCTGGTGACAATGATTAATGGCTATCTCTTGGTGGAATTCTTCTCCTCTGAAGTGAAT GGAGCAATAGTTGGCGCTGTACTCGGTACGCTAACCGCTGCATATGTTGGATTCATAATATATCTTATTTGGCGTGCATT TACCTTTTCACCTTGGCAAAAGGTTTCCCAATCAAAGACAATTGCTCACTCAGAGAGTTGAGTAATTAATCCTTCTAACC ACGCCTAGGAGCTGGAATTCTGCCCAAGGCTTTCATGGCTACTTTTGCGCCTGATCCTTTTTGAAGTATCTCGTGCTTGT TACTCTGAGATCAAGTCGATGCAGTGGGCAGGGTCACCTTATTGTTTGCCTGTAGATTATCTAATAGATCAGAGTAGATT CTAGGACTGTATTATTTGCAAACTTTCTTGTCTCTAATGCTCTGGAAACACACCTCTTTTTATTTTCTTTTTGGCTCCTT GTATCTTTTTATATGTTTTTCTCTAGGGCGGCGGCTGTTATGATCAAATTCTTTGGCCGAAAGTTTAAGGTGTTAGGTAT TCCTTTATGCAATAATTTTTTAAGGTTGAAGCGTGTATTATGAATGACCTATGTACGTTGTTAATTTCAATAATGTAATT AGAATGGTAAATGCTGTAGGGAATGGATCCAATTCTATTGCACTTGATTATAGAAATTTTGACATAATACGGTATTATGC CAACAATGTAGATTGTAGCCTCTCTGATTTCCTCAAAACTTGGTAGACGCCTTCCTCCATTAATGTTTAAAACATACTAA CATCCTAAGCATAAGTAATTGTGTGAAAGTGGG
CDS sequence (LotjaGi4g1v0098700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCGGAACCCGAGAGAACAGGAGCAGCAGCCACTGTTGGAAGTAGAGGAAGAGGAAGAGACGGCGTATGACTCATC GGAGAAGATTGTGGTGGTGGGAATCGACGAGGAAGAGGACTACGGCGGCAAGGTTCCGCCGTTTTCATGGAAGAAGCTAT GGCGGTTCACAGGGCCAGGGTTTCTCATGTGCATAGCGTTTCTCGATCCGGGGAACCTGGAGGGGGACTTACAAGCGGGT GCCATTGCAGGGTACTCGTTGCTGTGGCTTTTGATGTGGGCTACTGGCATGGGGCTGCTAATTCAGCTCTTGTCGGCGCG GCTTGGAGTCGCCACCGGGAAGCACTTGGCGGAGCTGTGCAGGGAGGAGTACCCCACGTGGGCTAGGATGGTGCTGTGGG TTATGGCTGAGGTTGCTCTCATTGGTTCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCGATAAGGATTCTCAGTAAT GGGGTTGTGCCCCTTTGGGCTGGGGTTGTCATTACTGCTCTTGATTGTTTTATTTTTCTCTTTCTGGAGAACTATGGTGT GAGGTCATTGGAAGCATTTTTTGGTGTTCTTATTGGGATAATGGCACTGGCGTTCGCGTGGATGTTTGGTGAAACACAGC CCAGCGGCAAGGAACTTCTTGTTGGCATTTTGGTTCCAAAACTCAGCTCCAGAACTATACAGCAGGCTGTTGGAGTTGTG GGCTGCCTTATAATGCCTTACAATGTATTCTTGCACTCTGCTCTTGTTCAATCGAGGAAGATTGACCACAGCAACAAAGG ACGGGTTCAAGAAGCTCTTAACTATTACTCTATAGAGTCCACCCTTGCACTTGTCGTCTCCTTTGTCATTAACATATTTG TGACAACTGTGTTTGCCAAGGGGTTTTATGGTTCTGAAGTAGCAGATAGCATTGGTCTTGTAAATGCAGGACAGTATCTT CAGGACGCGTATGGTGGTGGAGTAGTTCCAATTTTATATATATGGGGTATTGGGTTATTGGCAGCCGGCCAAAGTAGCAC TATTGCTGGTACTTATGCCGGACAATTTATCATGGGAGGGTTTCTAAATTTAAAGATCAAAAAATGGATGAGGGCGTTAA TTACCCGAAGTTGTGCAATAGTACCAACCATGATTGTTGCTCTTATATTTGATTCCTCAGAGCAATCGCTGGATGTTCTG AATCAGTGGCTTAATGTTCTTCAGTCAGTCCAAATCCCCTTTGCTGTTATTCCTTTACTCTGTCTGGTTTCCAAGGAGGA GATAATGGGCACTTTCAAAATTGGTGCTGTCCTCAAGACTATTTCTTGGCTTGTGGCTGCTCTGGTGACAATGATTAATG GCTATCTCTTGGTGGAATTCTTCTCCTCTGAAGTGAATGGAGCAATAGTTGGCGCTGTACTCGGTACGCTAACCGCTGCA TATGTTGGATTCATAATATATCTTATTTGGCGTGCATTTACCTTTTCACCTTGGCAAAAGGTTTCCCAATCAAAGACAAT TGCTCACTCAGAGAGTTGA
Protein sequence (LotjaGi4g1v0098700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARNPREQEQQPLLEVEEEEETAYDSSEKIVVVGIDEEEDYGGKVPPFSWKKLWRFTGPGFLMCIAFLDPGNLEGDLQAG AIAGYSLLWLLMWATGMGLLIQLLSARLGVATGKHLAELCREEYPTWARMVLWVMAEVALIGSDIQEVIGSAIAIRILSN GVVPLWAGVVITALDCFIFLFLENYGVRSLEAFFGVLIGIMALAFAWMFGETQPSGKELLVGILVPKLSSRTIQQAVGVV GCLIMPYNVFLHSALVQSRKIDHSNKGRVQEALNYYSIESTLALVVSFVINIFVTTVFAKGFYGSEVADSIGLVNAGQYL QDAYGGGVVPILYIWGIGLLAAGQSSTIAGTYAGQFIMGGFLNLKIKKWMRALITRSCAIVPTMIVALIFDSSEQSLDVL NQWLNVLQSVQIPFAVIPLLCLVSKEEIMGTFKIGAVLKTISWLVAALVTMINGYLLVEFFSSEVNGAIVGAVLGTLTAA YVGFIIYLIWRAFTFSPWQKVSQSKTIAHSES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 52 | 52 | - | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 8 | 511 | 504 | 4.8E-291 | – | |
| PANTHER | 8 | 511 | 504 | 4.8E-291 | ||
| Hamap | 38 | 461 | 424 | 37.33 | ||
| TIGRFAM | 51 | 429 | 379 | 8.4E-128 | ||
| Phobius | 53 | 68 | 16 | - | – | |
| Phobius | 69 | 87 | 19 | - | – | |
| Pfam | 74 | 435 | 362 | 1.7E-118 | ||
| TMHMM | 82 | 104 | 23 | - | – | |
| Phobius | 88 | 110 | 23 | - | – | |
| Phobius | 111 | 130 | 20 | - | – | |
| Phobius | 131 | 157 | 27 | - | – | |
| PRINTS | 132 | 158 | 27 | 5.3E-79 | ||
| Phobius | 158 | 162 | 5 | - | – | |
| TMHMM | 161 | 183 | 23 | - | – | |
| PRINTS | 162 | 181 | 20 | 5.3E-79 | ||
| Phobius | 163 | 182 | 20 | - | – | |
| Phobius | 183 | 188 | 6 | - | – | |
| PRINTS | 187 | 208 | 22 | 5.3E-79 | ||
| Phobius | 189 | 210 | 22 | - | – | |
| TMHMM | 190 | 212 | 23 | - | – | |
| Phobius | 211 | 235 | 25 | - | – | |
| TMHMM | 232 | 251 | 20 | - | – | |
| PRINTS | 236 | 259 | 24 | 5.3E-79 | ||
| Phobius | 236 | 255 | 20 | - | – | |
| Phobius | 256 | 275 | 20 | - | – | |
| TMHMM | 272 | 294 | 23 | - | – | |
| Phobius | 276 | 299 | 24 | - | – | |
| Phobius | 300 | 331 | 32 | - | – | |
| TMHMM | 331 | 353 | 23 | - | – | |
| Phobius | 332 | 353 | 22 | - | – | |
| PRINTS | 343 | 362 | 20 | 5.3E-79 | ||
| Phobius | 354 | 372 | 19 | - | – | |
| PRINTS | 371 | 388 | 18 | 5.3E-79 | ||
| TMHMM | 373 | 390 | 18 | - | – | |
| Phobius | 373 | 390 | 18 | - | – | |
| Phobius | 391 | 401 | 11 | - | – | |
| Phobius | 402 | 424 | 23 | - | – | |
| TMHMM | 405 | 424 | 20 | - | – | |
| PRINTS | 405 | 424 | 20 | 5.3E-79 | ||
| Phobius | 425 | 435 | 11 | - | – | |
| Phobius | 436 | 456 | 21 | - | – | |
| TMHMM | 436 | 458 | 23 | - | – | |
| Phobius | 457 | 467 | 11 | - | – | |
| Phobius | 468 | 490 | 23 | - | – | |
| TMHMM | 468 | 490 | 23 | - | – | |
| Phobius | 491 | 512 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0098700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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