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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0107000 |
| Transcript ID | LotjaGi4g1v0107000.6 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q41058|GLGB1_PEA 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic; TrEMBL-Plants: tr|G7LGE3|G7LGE3_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi4g1v0107000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:15008616..15010871) extracted from Lotus japonicus Gifu genome v1.2.
GTACTTTGGATGGAACTAATTCTCATCCCACACAGCATATTCCAAAGAAAATTTCCAACAGGACAATGCAAAAATAAAAA TAAAAATGGTGATTAACCATATCCTAACAAGAACAGCACAGTACACATGTTAGGAGACAAATCATTCATAGGACATCGTT TTTGCTTCTTATCAAATTTTTCTGAATGGGATTTTACATGATTTTTGTAGCATTTTATGGAAGGCCATGCAAAAATTTCT CCAATATCACGTGTCCCTCTCATCACTGTTCTAGATACCAAGCATCATCTGAATGATTTTCCAGTTTGCGAGGTATGATA CTGGTTACTATTTGATTTTGAGACATCTTTTTATTAGATTTGTTATGCTCAATCAAATAACGCCACTTATCCACTGCCAG CCATTTCATTTGGAGCTAAATTTCTTTAATAAAGCCAACCGAGTTCTTCATTATCCAGCCAGAGCGTTCTATGTGGATGG ACTGAACCTAATGGCACATAACCTATCGTCTGGATCTGACAGTATCTACCGGAAGCTCTATAATTCGGTAATGTAGAGAG TAGTTTTTTGGACAATATCATGTATTTGTAATTATTTTTCAGTCTAATGAGACATTCATTTGATCATTTCACATGATATT GATATGTTATAAATATTTATTTATTGTAAGTGAAAATCACAACAAATTGGCAAATTCAACGATGTAATATTGTTCATTAA TTTTCTATAGATTCCTGGAAGTGTGGAGTACCGAGCAAAATACTTGGTGTACAGTAAAAAGCAGCGGTTATTTCTTGTAG TTTATGAGTTTAGTGGTGCTACAAATGAAGTTGTATTTTACTGGGAAAATACTGATGCACAGACAGCAAACAGTAAGAGC AGCACCGTTAAAGGTATTTTGTCAGTGGAATGCATTTTTCTCTTTATGCCAGAGTTTGTTCATGCACTATGTGTTAATAA TTCAAGTAATCATCTTGTAGGTCGAGATGCAGCATTTATTGGCTCCAATGAGAACCAATTTGCTATTCTTGATGACGACA GAACAGGGTTGGCTGTATATACTCTACCAGGAGGGGCTTCTAAAGAAGCTAAGGACAATGATAAAGTTTTTGAAGAAAAC CAACCTGCAGAGACTAGTGTTGGTTCAATTCGTGGCCCGACGCCATTTATGTTTGAAACTGAAGTTGATCGTATCTTTTC TACACCAATAGGTTCTTGAACATGCGTATATCACATAATTTATGCATCTATCTACACACTTGTATACAATGTTATCCCTT TTTATACAAGCTTAGCATTAGTTTTTCGGTGGCATAACCCATAAAATTGAGAGTGGTTTCTCTGATTATAGATTCAACTT TGATGTTTGCTTCTCATGGGAACCAAATTGGCCAAGTAAAGCTCATACAAGGGTACCGCTTATCGACTTCAACTGCCAAT GGCCATTATATCTCAACCAACAGTGAGGGAAAAAAGTCAATTAAGTTGAAAAGAAACGAGATTGTTCTTCAGGTATAATT TAGAGCGTGCTTCTTAATTATGATTGAAAGTGGCATAGCATACATCTCTTAGTTAAGTGGAACAATTAGAAGATAAGAGT AAAGGAAAAAAAGGAAATTGATTAGAGAAAATAGGATTTTTTTGTTTTGTTTTTTAATTTCATATTAATTTCTAAAATAT ATTTAAATTTTTAAAAATTCTCTTTAAATTATTTTTGAATTGTATATAACCAAAAACTCGATAACTAATGAACTTTTAGC TCACAATGCATTGGTATGAGTCTTAAGATGTGTCAACAATACATTGATTCAACCTACCTTGTGTTGAATATGTTTAGAGC TTGTTTCTTAGTCCTATGGGTTACTTACAGCCATTCTCTCCCTTCCCCCCCCCCCCAAAAATAATTTTTTTGATCCCTTT TCCTTTCTTCCCTTTGGGTGAAGTCATTGATTATAGCATTCTTCTTTGGGGAAATATTAATAAGTAGCTCTGTATTAATC CTTGTTTCTAAAAATTCGACAGGTGCACTGGCAAGAAACTCTTAGGGGTTATGTTGCTGGAATTTTAACGACACACAGAG TCCTTATTGTTTCAGCGGCCCTTGATATACTCGCAGGCACTTCTACCAATTTTGACAAGGGACTTCCTTCAATATCCTTT TTGTTTGTTTATAAAATAGAGAAATTGTTTATTCACATTAAATTTCCCGTGTCACGATATTTTCTATTTTGAAACCCTAA CTCAAGCTCACTATAG
CDS sequence (LotjaGi4g1v0107000.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTTTATGGAAGGCCATGCAAAAATTTCTCCAATATCACGTGTCCCTCTCATCACTGTTCTAGATACCAAGCATCA TCTGAATGATTTTCCAGTTTGCGAGCCATTTCATTTGGAGCTAAATTTCTTTAATAAAGCCAACCGAGTTCTTCATTATC CAGCCAGAGCGTTCTATGTGGATGGACTGAACCTAATGGCACATAACCTATCGTCTGGATCTGACAGTATCTACCGGAAG CTCTATAATTCGATTCCTGGAAGTGTGGAGTACCGAGCAAAATACTTGGTGTACAGTAAAAAGCAGCGGTTATTTCTTGT AGTTTATGAGTTTAGTGGTGCTACAAATGAAGTTGTATTTTACTGGGAAAATACTGATGCACAGACAGCAAACAGTAAGA GCAGCACCGTTAAAGGTCGAGATGCAGCATTTATTGGCTCCAATGAGAACCAATTTGCTATTCTTGATGACGACAGAACA GGGTTGGCTGTATATACTCTACCAGGAGGGGCTTCTAAAGAAGCTAAGGACAATGATAAAGTTTTTGAAGAAAACCAACC TGCAGAGACTAGTGTTGGTTCAATTCGTGGCCCGACGCCATTTATGTTTGAAACTGAAGTTGATCGTATCTTTTCTACAC CAATAGATTCAACTTTGATGTTTGCTTCTCATGGGAACCAAATTGGCCAAGTAAAGCTCATACAAGGGTACCGCTTATCG ACTTCAACTGCCAATGGCCATTATATCTCAACCAACAGTGAGGGAAAAAAGTCAATTAAGTTGAAAAGAAACGAGATTGT TCTTCAGGTGCACTGGCAAGAAACTCTTAGGGGTTATGTTGCTGGAATTTTAACGACACACAGAGTCCTTATTGTTTCAG CGGCCCTTGATATACTCGCAGGCACTTCTACCAATTTTGACAAGGGACTTCCTTCAAGCTCACTATAG
Protein sequence (LotjaGi4g1v0107000.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHFMEGHAKISPISRVPLITVLDTKHHLNDFPVCEPFHLELNFFNKANRVLHYPARAFYVDGLNLMAHNLSSGSDSIYRK LYNSIPGSVEYRAKYLVYSKKQRLFLVVYEFSGATNEVVFYWENTDAQTANSKSSTVKGRDAAFIGSNENQFAILDDDRT GLAVYTLPGGASKEAKDNDKVFEENQPAETSVGSIRGPTPFMFETEVDRIFSTPIDSTLMFASHGNQIGQVKLIQGYRLS TSTANGHYISTNSEGKKSIKLKRNEIVLQVHWQETLRGYVAGILTTHRVLIVSAALDILAGTSTNFDKGLPSSSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 300 | 299 | 4.4E-159 | – | |
| PANTHER | 2 | 300 | 299 | 4.4E-159 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0107000.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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